Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VE1	43161	2024-09-23	2023-12-18	2.7	2.67	2.66	2.8	0.006	0.58	0.0	0.05	13.15	0.00	2.258	2.95	0.26	2.2	97.8	0.0	0.62	0.75	0.85	5.80	2.8	0.003	0.60	0.0	0.05	15.74	0.00	2.352	5.47	1.56	2.4	97.6	0.0	-0.15	0.39	0.76	0.87	5.33	3656	466	10	0	2	27	0	logfile
✔	8AZ2	15730	2024-09-23	2022-09-05	3.4	3.30	3.43	3.7	0.003	0.45	0.0	0.04	9.02	0.00	2.412	5.63	0.00	0.0	100.0	0.0	-2.98	0.52	0.85	6.33	3.6	0.007	0.66	0.0	0.05	11.59	0.00	2.330	2.11	1.56	3.8	96.2	0.0	-2.99	0.47	0.49	0.87	6.08	2935	395	30	0	15	0	0	logfile
✔	8T4Y	41040	2024-09-26	2023-06-12	3.58	4.16	3.66	4.0	0.003	0.66	0.0	0.04	16.20	0.00	2.242	7.50	0.00	4.1	95.9	0.0	2.13	0.68	0.73	1.49	4.0	0.003	0.64	0.0	0.04	17.26	0.00	2.467	6.70	5.78	3.0	97.0	0.0	2.77	0.56	0.74	0.79	1.59	13348	2004	8	0	4	0	0	logfile
✔	8JY4	36719	2024-09-29	2023-07-02	3.58	4.95	3.68	4.2	0.003	0.55	0.0	0.04	15.96	0.00	1.980	6.92	0.00	3.0	96.9	0.1	-0.52	0.62	0.78	0.68	4.2	0.003	0.65	0.0	0.04	16.20	0.00	2.242	10.02	2.20	3.4	96.5	0.1	0.91	0.84	0.62	0.80	0.53	22246	1383	1	0	0	0	11252	logfile
✔	8GLK	40196	2024-09-29	2023-03-22	2.8	3.05	2.68	2.9	0.003	0.56	0.0	0.05	14.06	0.00	2.154	7.46	0.08	5.0	95.0	0.0	-0.46	0.81	0.87	4.79	2.9	0.003	0.60	0.0	0.05	14.74	0.00	2.395	5.28	1.00	5.2	94.8	0.0	-0.48	0.42	0.77	0.91	4.63	21899	2761	5	0	1	0	0	logfile
✔	9BiS	44600	2024-09-25	2024-04-24	3.2	3.55	3.16	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.57	0.0	0.04	18.34	0.00	2.278	4.65	1.60	7.0	93.0	0.0	0.77	0.78	0.61	0.84	3.10	9444	595	3	0	1	0	4734	logfile
✔	8PNP	17782	2024-09-27	2023-06-30	2.49	2.59	2.43	2.6	0.003	0.50	0.0	0.04	18.52	0.00	2.019	4.32	1.24	2.2	97.7	0.1	0.87	0.81	0.91	3.66	2.6	0.003	0.58	0.0	0.04	18.53	0.00	2.180	4.67	2.03	2.9	97.1	0.0	0.88	0.91	0.81	0.92	3.75	14460	1715	9	29	0	43	0	logfile
✔	8PU0	17927	2024-09-29	2023-07-16	4.25	3.03	4.05	4.0	0.005	0.69	0.0	0.05	16.63	0.00	2.202	23.73	0.61	7.4	92.6	0.0	-1.73	0.68	0.63	—	3.3	0.003	0.74	0.0	0.05	15.94	0.00	2.387	11.32	0.00	6.9	93.1	0.0	-1.56	1.21	0.75	0.74	—	22416	2612	6	71	3	0	0	logfile
✔	8AZ4	15753	2024-09-23	2022-09-05	2.2	2.27	2.10	2.2	0.006	0.72	0.0	0.05	10.22	0.00	2.292	1.89	0.00	7.7	92.3	0.0	-3.94	0.57	0.88	8.31	2.2	0.004	0.72	0.0	0.05	13.37	0.00	2.655	1.89	1.25	7.7	92.3	0.0	-4.01	0.49	0.59	0.91	7.97	2280	280	30	0	10	100	0	logfile
✔	8JBG	36145	2024-09-24	2023-05-08	2.8	2.88	2.76	2.9	0.002	0.54	0.0	0.04	17.54	0.00	2.106	9.23	4.36	3.9	96.1	0.0	-0.10	0.67	0.82	2.97	2.9	0.003	0.60	0.0	0.04	17.61	0.00	2.470	7.08	2.94	4.4	95.6	0.0	0.81	0.30	0.65	0.83	2.90	8750	1139	6	0	0	0	0	logfile
✔	8ST4	40757	2024-09-24	2023-05-09	2.35	2.44	2.34	2.4	0.004	0.58	0.0	0.05	15.89	0.00	1.956	4.13	0.03	3.5	96.5	0.0	0.04	0.78	0.82	4.20	2.4	0.003	0.55	0.0	0.04	15.45	0.00	2.201	2.42	0.84	3.5	96.5	0.0	0.25	1.15	0.76	0.85	4.13	50159	3143	22	0	18	7	24869	logfile
✔	8BV5	16255	2024-09-24	2023-01-04	3.54	2.97	3.43	3.9	0.003	0.66	0.0	0.05	19.37	0.00	1.934	17.97	0.59	5.7	94.3	0.0	-0.26	0.67	0.65	1.40	3.8	0.003	0.67	0.0	0.04	19.17	0.00	1.924	11.55	5.13	5.9	94.0	0.1	-0.10	0.61	0.66	0.66	1.22	6296	767	4	0	3	0	0	logfile
✔	8FAi	28957	2024-09-24	2022-11-27	3.0	2.58	3.05	2.7	0.011	1.63	0.0	0.04	15.88	0.00	2.395	4.13	0.00	0.0	100.0	0.0	3.16	0.53	0.80	3.27	2.6	0.004	0.64	0.0	0.04	15.87	0.00	2.225	5.64	6.67	0.1	99.9	0.0	3.84	2.69	0.54	0.83	1.88	7845	1020	25	0	15	0	0	logfile
✔	8QZ8	18772	2024-09-29	2023-10-26	3.13	3.36	3.18	3.4	0.003	0.46	0.0	0.04	18.09	0.00	1.861	3.62	0.09	3.3	96.5	0.1	1.13	0.67	0.84	3.19	3.4	0.003	0.50	0.0	0.04	17.76	0.00	2.083	2.96	1.37	4.2	95.8	0.0	0.79	2.00	0.71	0.86	3.36	22629	1356	8	42	5	0	11077	logfile
✔	8T4M	41036	2024-09-27	2023-06-09	3.16	3.60	3.20	3.5	0.002	0.56	0.0	0.04	14.87	0.00	2.217	5.78	0.00	3.4	96.6	0.0	0.92	0.65	0.81	2.75	3.5	0.003	0.57	0.0	0.04	15.41	0.00	2.560	4.98	2.04	3.4	96.6	0.0	1.94	1.35	0.66	0.82	2.69	17000	2132	8	0	4	0	0	logfile
✔	8R3Z	18878	2024-09-24	2023-11-10	3.4	4.16	3.41	3.9	0.004	0.65	0.0	0.05	17.44	0.00	1.932	14.50	0.29	3.5	96.5	0.0	-0.21	0.83	0.79	1.95	3.9	0.002	0.56	0.0	0.04	17.72	0.00	2.034	11.54	2.71	2.3	97.7	0.0	0.47	0.51	0.82	0.77	1.68	6389	755	3	6	1	0	0	logfile
✔	8SKS	40566	2024-09-23	2023-04-20	2.91	3.52	2.94	3.4	0.004	0.55	0.0	0.04	11.98	0.00	1.880	7.37	0.00	3.1	96.9	0.0	0.81	0.82	0.84	5.54	3.4	0.004	0.59	0.0	0.04	15.05	0.00	1.990	4.91	3.16	3.6	96.4	0.0	1.05	1.15	0.82	0.84	5.20	6232	792	8	0	4	0	0	logfile
✔	8TZK	41761	2024-09-27	2023-08-27	3.55	3.97	3.48	3.8	0.004	0.53	0.0	0.04	11.13	0.00	1.922	2.51	0.00	3.1	96.9	0.0	3.24	0.72	0.79	1.99	3.8	0.003	0.56	0.0	0.04	14.39	0.00	2.057	5.56	1.45	3.6	96.4	0.0	2.68	0.73	0.73	0.80	2.09	17077	1149	7	0	4	0	8468	logfile
✔	8iER	35391	2024-09-27	2023-02-15	4.87	5.08	4.32	4.9	0.002	0.53	0.0	0.04	12.91	0.00	1.978	6.35	0.00	7.4	92.3	0.3	-0.61	0.48	0.46	—	4.9	0.002	0.58	0.0	0.04	12.94	0.00	2.424	6.21	0.00	9.5	90.3	0.2	-0.89	1.27	0.52	0.55	—	15257	967	2	0	1	0	7758	logfile
✔	8HTi	35010	2024-09-24	2022-12-21	2.97	2.25	2.98	3.1	0.004	0.60	0.0	0.04	15.49	0.00	2.277	5.96	0.00	3.0	97.0	0.0	0.28	0.79	0.85	2.60	3.1	0.002	0.52	0.0	0.04	16.39	0.00	2.569	3.63	2.36	2.3	97.7	0.0	1.07	0.39	0.78	0.84	2.10	7390	962	6	0	1	0	0	logfile

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