Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HNU	34918	2024-09-27	2022-12-08	2.28	2.97	2.29	2.7	0.003	0.45	0.0	0.04	16.20	0.00	2.170	3.11	1.52	2.0	97.9	0.1	1.07	0.85	0.90	4.54	2.7	0.004	0.91	2.0	0.04	16.20	0.00	2.142	2.41	0.58	2.2	97.7	0.1	0.91	0.16	0.85	0.91	4.82	16178	1970	6	0	4	316	0	logfile
✔	8J6J	36006	2024-09-24	2023-04-26	2.8	2.60	2.74	2.9	0.004	0.62	0.0	0.04	14.73	0.00	2.098	8.22	0.21	2.6	97.4	0.0	1.70	0.45	0.63	1.61	2.8	0.003	1.01	1.0	0.04	16.30	0.00	2.347	8.50	3.23	3.6	96.4	0.0	0.73	1.06	0.61	0.78	2.60	8979	1151	6	0	1	0	0	logfile
✔	8oSG	17152	2024-09-27	2023-04-18	3.8	4.13	3.92	4.0	0.004	0.74	0.0	0.04	18.75	0.00	2.009	9.70	0.19	8.1	91.8	0.1	-1.30	0.80	0.83	0.89	4.0	0.003	0.65	0.0	0.04	18.73	0.00	1.993	6.42	3.95	6.4	93.6	0.0	-1.00	0.36	0.80	0.82	0.75	14536	1833	12	0	10	0	0	logfile
✘	8oZE	17306	2024-09-26	2023-05-09	2.91	3.20	3.05	3.2	0.003	0.55	0.0	0.04	17.98	0.00	2.128	9.17	0.00	6.7	93.0	0.3	-0.72	0.72	0.77	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13434	1448	8	74	0	0	0	logfile
✔	8DZZ	27810	2024-09-24	2022-08-08	4.1	4.63	4.25	4.1	0.004	0.74	5.0	0.05	12.49	0.00	2.145	3.15	0.25	1.6	98.4	0.0	1.15	0.88	0.81	—	4.1	0.002	0.55	0.0	0.04	12.63	0.00	2.455	6.38	0.00	1.7	98.3	0.0	1.82	0.51	0.89	0.85	—	49596	6110	8	0	8	0	0	logfile
✔	8AFE	15395	2024-09-24	2022-07-17	3.3	2.35	3.31	2.0	0.006	0.70	0.0	0.04	14.17	0.00	2.161	14.08	0.00	4.9	95.1	0.0	-1.30	0.59	0.64	1.83	2.0	0.005	0.66	0.0	0.04	16.55	0.00	2.512	10.74	4.44	4.5	95.5	0.0	0.53	0.40	0.62	0.69	1.13	6785	880	10	0	0	0	0	logfile
✔	8WRH	37776	2024-09-24	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.56	0.0	0.04	17.80	0.00	2.495	6.97	2.02	4.1	95.9	0.0	0.70	0.90	0.59	0.82	1.73	6459	790	3	0	4	0	0	logfile
✔	8EoK	28378	2024-09-29	2022-10-03	3.53	3.92	3.87	3.8	0.003	0.60	0.0	0.05	14.89	0.00	2.102	7.18	0.04	5.7	94.3	0.0	-1.09	0.80	0.81	2.06	3.9	0.003	0.60	0.0	0.04	16.05	0.00	2.037	5.14	1.59	5.2	94.8	0.0	-0.96	0.33	0.80	0.82	2.00	22233	2792	9	0	6	0	0	logfile
✔	8iHS	35454	2024-09-30	2023-02-23	2.5	2.74	2.57	2.8	0.005	0.65	0.0	0.05	17.35	0.00	1.460	3.60	0.37	2.6	97.4	0.0	-0.23	0.71	0.88	4.31	2.8	0.006	0.68	0.0	0.05	17.24	0.01	1.809	2.70	2.48	3.1	96.9	0.0	-0.06	0.91	0.73	0.89	3.93	24352	3192	16	0	24	0	0	logfile
✔	8JJ8	36342	2024-09-23	2023-05-29	3.2	3.51	3.45	3.5	0.005	0.90	0.0	0.05	15.21	0.00	2.107	14.28	1.86	6.7	93.3	0.0	0.54	0.51	0.75	2.04	3.5	0.006	1.33	1.0	0.06	16.90	0.00	2.209	10.18	1.86	4.3	95.4	0.3	1.56	1.18	0.44	0.74	1.79	3023	375	2	0	1	0	0	logfile
✔	8JUZ	36667	2024-09-30	2023-06-27	4.29	4.11	4.43	3.9	0.003	0.72	0.0	0.04	15.18	0.00	2.131	9.33	0.07	6.6	93.3	0.1	-0.25	0.66	0.49	—	3.9	0.003	0.74	0.0	0.04	14.71	0.00	2.300	9.94	0.00	6.6	93.3	0.1	0.16	1.56	0.78	0.70	—	25274	3155	12	0	6	0	0	logfile
✔	8EC6	28013	2024-09-28	2022-09-01	3.1	3.45	3.04	3.4	0.004	0.49	0.0	0.04	12.90	0.00	2.049	6.80	0.05	5.7	94.2	0.1	1.23	0.69	0.82	3.48	3.4	0.003	0.51	0.0	0.04	13.98	0.00	2.528	4.45	1.95	6.1	93.8	0.1	1.64	2.21	0.77	0.86	3.37	19133	2479	16	0	8	0	0	logfile
✔	8PSo	17858	2024-09-27	2023-07-13	2.4	2.34	2.37	2.4	0.003	0.56	0.0	0.04	18.69	0.00	1.693	2.47	1.55	2.1	97.9	0.0	1.47	0.74	0.88	4.68	2.4	0.003	0.53	0.0	0.04	18.05	0.00	1.837	1.48	1.19	2.4	97.6	0.0	1.22	0.22	0.73	0.89	4.72	16201	971	13	28	4	44	7937	logfile
✔	8P6V	17508	2024-09-23	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.005	0.69	0.0	0.05	16.84	0.01	2.544	6.75	2.35	1.6	98.2	0.2	1.00	0.77	0.65	0.78	5.32	5243	630	7	0	2	138	0	logfile
✔	8JEU	36196	2024-09-28	2023-05-16	3.5	4.02	3.58	3.9	0.002	0.52	0.0	0.04	15.90	0.00	2.202	6.95	0.17	5.0	94.7	0.3	-0.27	0.71	0.81	2.03	3.9	0.002	0.58	0.0	0.04	15.91	0.00	2.525	6.60	1.54	4.8	95.0	0.2	1.00	0.40	0.71	0.81	1.59	19438	2640	4	0	0	0	0	logfile
✔	8JEC	36185	2024-09-28	2023-05-15	3.1	3.61	3.15	3.5	0.002	0.40	0.0	0.04	9.75	0.00	2.196	4.85	1.03	4.1	95.8	0.1	0.28	0.70	0.82	2.48	3.5	0.002	0.56	0.0	0.04	12.55	0.00	2.592	5.48	1.53	4.0	95.9	0.1	1.83	0.48	0.72	0.83	1.56	19680	2632	4	0	0	0	0	logfile
✔	8AHX	15452	2024-09-26	2022-07-24	3.11	3.79	3.18	3.6	0.007	0.92	0.0	0.22	19.65	0.00	2.203	5.77	0.71	5.1	94.7	0.3	0.91	0.77	0.89	3.08	3.6	0.004	0.64	0.0	0.04	14.01	0.00	2.422	5.81	2.22	5.4	94.5	0.1	1.37	0.91	0.76	0.88	2.51	12687	1608	13	0	24	0	0	logfile
✔	8GKA	40181	2024-09-29	2023-03-17	2.55	2.76	2.62	2.8	0.001	0.38	0.0	0.03	13.14	0.00	2.291	7.21	0.54	3.2	96.8	0.0	0.61	0.63	0.78	3.74	2.8	0.003	0.62	0.0	0.04	17.39	0.00	2.337	7.91	1.71	5.0	95.0	0.0	1.08	1.60	0.64	0.82	3.40	21812	2500	8	0	34	0	0	logfile
✔	8HFY	34728	2024-09-25	2022-11-13	3.21	3.55	3.27	3.5	0.003	0.55	0.0	0.04	15.55	0.00	2.081	4.76	1.44	3.2	96.8	0.0	0.29	0.74	0.83	2.20	3.5	0.003	0.57	0.0	0.04	14.66	0.00	1.987	5.46	1.58	3.9	96.1	0.0	0.45	0.59	0.75	0.87	1.83	6568	789	6	0	10	0	0	logfile
✔	8JSN	36624	2024-09-27	2023-06-20	3.4	3.48	3.33	3.4	0.003	0.58	0.0	0.04	15.44	0.00	2.234	5.28	0.06	5.7	93.9	0.5	0.77	0.78	0.85	2.32	3.4	0.003	0.63	0.0	0.04	16.82	0.00	2.412	5.01	1.48	5.7	93.9	0.5	0.85	0.33	0.80	0.88	2.33	14856	1856	7	10	1	0	0	logfile

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