Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E29	27829	2024-09-24	2022-08-14	3.1	3.72	3.29	3.6	0.012	1.14	0.0	0.07	17.73	0.01	2.305	6.53	0.66	1.5	98.5	0.0	-1.55	0.70	0.79	3.22	3.6	0.002	0.55	0.0	0.04	18.22	0.00	2.429	4.88	1.97	1.9	98.1	0.0	0.56	0.39	0.61	0.73	3.03	6197	692	2	33	0	0	0	logfile
✔	8DK2	27481	2024-09-30	2022-07-01	4.1	4.81	4.17	4.1	0.002	0.47	0.0	0.04	13.70	0.00	1.988	7.72	2.88	3.7	96.3	0.0	2.05	0.84	0.80	—	4.1	0.002	0.52	0.0	0.04	14.38	0.00	2.004	5.85	0.00	3.5	96.5	0.0	2.53	1.59	0.85	0.81	—	23727	2840	12	52	4	0	0	logfile
✔	7PV2	13664	2024-09-30	2021-10-01	3.2	3.39	—	3.3	0.011	0.71	0.0	0.08	14.85	0.00	1.971	4.86	0.00	3.9	96.1	0.0	-3.84	0.75	0.82	3.34	3.4	0.002	0.58	0.0	0.04	16.81	0.00	2.357	5.16	1.15	2.4	97.6	0.0	0.05	0.58	0.76	0.86	2.64	25440	3084	12	0	0	0	0	logfile
✔	7LQZ	23492	2024-09-29	2021-02-15	3.41	3.83	—	3.7	0.013	1.55	0.0	0.06	20.37	0.01	2.211	5.55	0.35	7.3	92.7	0.0	-5.71	0.68	0.79	2.67	3.7	0.002	0.63	0.0	0.04	16.71	0.00	2.153	5.60	1.91	5.0	95.0	0.0	0.16	0.73	0.66	0.79	1.65	22765	2604	8	0	37	0	0	logfile
✔	8G46	29714	2024-09-24	2023-02-08	2.2	2.34	2.28	2.4	0.008	0.88	0.0	0.06	15.57	0.01	2.207	6.43	1.70	3.0	97.0	0.0	-0.25	0.54	0.79	4.41	2.4	0.002	0.54	0.0	0.04	16.06	0.00	2.559	5.07	1.27	2.9	97.1	0.0	0.41	0.26	0.62	0.82	3.73	8603	1064	7	0	2	110	0	logfile
✔	8CSV	26972	2024-09-23	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.002	0.48	0.0	0.04	15.88	0.00	2.546	4.37	2.33	3.3	96.5	0.2	2.38	0.57	0.56	0.87	4.60	3712	483	3	0	0	48	0	logfile
✔	7P37	13178	2024-09-26	2021-07-07	2.96	3.18	3.03	3.2	0.005	0.85	0.0	0.05	16.90	0.00	2.280	7.21	0.00	2.4	97.6	0.0	1.79	0.68	0.76	2.89	3.2	0.002	0.51	0.0	0.04	17.43	0.00	2.490	7.35	1.39	2.0	98.0	0.0	1.76	0.93	0.69	0.80	2.75	14496	1764	24	0	36	0	0	logfile
✔	7N5B	24185	2024-09-25	2021-06-05	3.8	4.41	3.97	4.3	0.002	0.48	0.0	0.04	14.24	0.00	1.903	6.38	0.20	2.3	97.7	0.0	2.06	0.70	0.77	1.53	4.3	0.002	0.56	0.0	0.04	16.35	0.00	1.995	6.22	1.12	2.6	97.4	0.0	2.91	0.44	0.65	0.78	2.18	9122	1160	4	0	6	0	0	logfile
✔	7ToV	26039	2024-09-29	2022-01-24	3.16	3.39	—	3.2	0.014	1.80	5.0	0.10	12.15	0.01	2.515	0.07	0.89	5.8	93.7	0.4	-0.81	0.83	0.86	4.13	3.2	0.002	0.57	0.0	0.04	12.71	0.00	2.521	2.64	0.81	3.7	96.2	0.1	0.63	0.53	0.84	0.88	3.24	23199	2983	18	0	58	0	0	logfile
✔	7ooA	13008	2024-09-27	2021-05-27	2.7	2.63	2.63	2.6	0.005	0.66	0.0	0.05	21.92	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.002	0.45	0.0	0.04	15.57	0.00	2.593	5.87	1.35	0.3	99.7	0.0	2.67	1.12	0.70	0.88	3.46	15610	1834	14	0	35	0	0	logfile
✔	7TL1	25983	2024-09-30	2022-01-18	3.5	3.79	3.47	3.6	0.004	0.69	0.0	0.05	11.66	0.01	2.302	3.28	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.5	0.002	0.48	0.0	0.04	12.18	0.00	2.412	4.41	0.40	2.8	97.2	0.0	0.70	0.27	0.85	0.84	2.34	25109	3138	11	0	38	0	0	logfile
✔	7ToY	26041	2024-09-30	2022-01-24	3.53	3.95	—	3.5	0.014	1.77	4.0	0.10	13.12	0.01	2.517	0.08	1.50	6.8	92.8	0.4	-1.10	0.85	0.84	2.97	3.5	0.002	0.58	0.0	0.04	13.50	0.00	2.529	3.65	0.83	3.6	96.3	0.1	0.61	1.20	0.85	0.84	2.02	24673	3049	20	0	61	0	0	logfile
✔	7SQ0	25373	2024-09-25	2021-11-04	3.7	3.39	3.64	3.6	0.004	0.68	0.0	0.05	13.62	0.00	2.215	4.77	0.00	2.6	97.4	0.0	-2.87	0.72	0.83	3.99	3.6	0.002	0.57	0.0	0.05	15.00	0.00	1.961	5.19	0.20	2.4	97.6	0.0	1.36	1.90	0.71	0.83	3.49	9160	593	7	0	42	0	4286	logfile
✔	6RiU	4898	2024-09-23	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.65	0.0	0.03	16.40	0.00	2.434	10.05	1.97	5.6	94.4	0.0	-1.03	1.42	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	6H3J	0134	2024-09-28	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.38	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.60	0.0	0.04	13.57	0.00	2.264	50.41	2.03	17.9	82.1	0.0	-5.00	2.68	0.77	0.86	2.67	20301	2511	3	0	0	0	212	logfile
✔	7X1Y	32952	2024-09-29	2022-02-25	3.3	3.50	3.29	3.4	0.006	0.85	2.0	0.05	16.19	0.01	1.293	4.15	0.52	8.5	91.3	0.2	-1.68	0.83	0.88	4.25	3.4	0.002	0.55	0.0	0.04	15.91	0.00	1.974	4.31	1.55	6.3	93.6	0.1	0.02	1.04	0.80	0.89	3.26	22032	2748	12	0	24	0	0	logfile
✔	7TPH	26055	2024-09-29	2022-01-25	3.58	4.03	—	3.6	0.013	1.76	5.0	0.10	12.02	0.01	2.501	0.16	1.01	7.2	92.3	0.6	-1.01	0.84	0.85	3.36	3.6	0.002	0.56	0.0	0.04	12.17	0.00	2.526	2.92	0.27	4.4	95.6	0.0	0.50	1.60	0.84	0.85	2.50	22180	2912	14	0	52	0	0	logfile
✔	7DCP	30638	2024-09-23	2020-10-26	3.15	2.93	—	2.9	0.005	0.92	0.0	0.05	11.27	0.01	2.092	3.96	0.61	2.9	97.1	0.0	-2.88	0.70	0.82	3.52	2.9	0.002	0.60	0.0	0.04	15.61	0.00	2.105	4.47	1.83	4.0	96.0	0.0	1.33	0.94	0.72	0.86	2.78	5868	732	3	0	2	0	0	logfile
✔	7QL0	14059	2024-09-24	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.1	0.002	0.57	0.0	0.05	14.49	0.00	2.497	3.45	1.39	1.0	99.0	0.0	-1.77	1.25	0.41	0.84	5.85	6390	414	6	0	0	0	3258	logfile
✔	7B1D	11984	2024-09-25	2020-11-24	3.41	4.29	3.57	3.6	0.004	0.71	0.0	0.05	12.56	0.00	2.197	6.80	0.29	6.2	93.8	0.0	-1.47	0.88	0.82	4.03	3.6	0.002	0.60	0.0	0.04	13.37	0.00	2.601	7.33	1.53	6.4	93.6	0.0	-1.18	0.35	0.89	0.86	3.47	10967	1505	8	0	12	0	0	logfile

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