Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WDY	37467	2024-09-26	2023-09-16	2.69	2.29	2.80	2.1	0.004	0.76	0.0	0.05	14.72	0.01	2.000	5.79	1.44	3.8	96.1	0.1	0.26	0.80	0.80	3.74	2.1	0.002	0.58	0.0	0.04	16.18	0.00	2.102	3.13	1.88	2.7	97.2	0.1	0.88	0.40	0.82	0.83	2.97	6548	791	6	0	11	0	0	logfile
✔	9FTG	50744	2024-09-29	2024-06-24	3.1	3.38	3.05	3.3	0.003	0.48	0.0	0.04	15.40	0.00	2.032	4.17	0.00	6.2	93.8	0.0	-0.54	0.71	0.90	3.62	3.3	0.002	0.54	0.0	0.04	15.83	0.00	2.374	3.24	2.88	5.9	94.1	0.0	0.29	0.34	0.67	0.89	3.28	21205	2795	10	0	5	0	0	logfile
✔	9BDC	44448	2024-09-26	2024-04-11	2.54	2.10	2.55	2.0	0.003	0.67	0.0	0.05	17.86	0.01	2.280	4.90	0.18	2.5	97.5	0.0	0.28	0.59	0.52	3.09	2.0	0.002	0.54	0.0	0.04	19.29	0.00	2.523	6.19	0.72	2.6	97.4	0.0	1.42	0.50	0.79	0.80	2.63	12026	1392	6	61	0	0	0	logfile
✔	8VVH	43559	2024-09-24	2024-01-31	3.95	4.19	3.95	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.002	0.66	0.0	0.04	17.01	0.00	2.536	6.62	5.14	7.0	92.9	0.1	-1.43	0.31	0.68	0.79	1.89	6877	941	4	0	0	0	0	logfile
✔	8K0F	36763	2024-09-25	2023-07-08	3.37	3.03	3.31	3.4	0.004	0.62	0.0	0.04	18.66	0.00	2.114	4.87	0.00	3.8	96.2	0.1	0.29	0.69	0.80	2.26	3.4	0.002	0.52	0.0	0.04	17.73	0.00	2.158	3.97	2.18	3.5	96.5	0.0	1.53	1.15	0.69	0.77	2.16	9595	1182	5	0	5	0	0	logfile
✔	8WK0	37592	2024-09-25	2023-09-26	3.34	3.64	3.55	3.7	0.008	0.66	0.0	0.05	14.37	0.00	1.796	10.43	0.00	8.8	91.2	0.0	-1.53	0.68	0.76	2.13	3.7	0.002	0.53	0.0	0.04	15.55	0.00	1.833	6.17	0.62	5.6	94.4	0.0	-1.23	0.36	0.65	0.75	1.74	53711	3486	11	0	10	0	26743	logfile
✔	9B6i	44260	2024-09-25	2024-03-25	3.26	3.70	3.19	3.6	0.005	0.79	0.0	0.05	12.46	0.00	2.031	9.07	0.17	2.4	97.6	0.0	1.86	0.67	0.80	1.94	3.6	0.002	0.48	0.0	0.04	13.67	0.00	2.404	5.34	1.49	3.4	96.6	0.0	1.75	0.47	0.63	0.76	1.98	55320	3424	8	0	24	0	27072	logfile
✔	8WDZ	37468	2024-09-26	2023-09-16	2.71	2.24	2.74	2.0	0.004	0.59	0.0	0.04	13.56	0.00	2.004	5.55	0.43	3.7	96.3	0.0	0.07	0.78	0.79	3.27	2.0	0.002	0.55	0.0	0.04	15.73	0.00	2.180	3.52	1.30	2.3	97.6	0.1	0.47	0.92	0.82	0.83	2.64	6559	791	6	0	11	0	0	logfile
✔	9CLP	45728	2024-09-23	2024-07-12	3.43	3.82	3.39	3.8	0.002	0.52	0.0	0.04	12.34	0.00	2.160	4.52	0.00	2.3	97.7	0.0	0.28	0.68	0.78	3.00	3.8	0.002	0.53	0.0	0.04	14.04	0.00	2.303	4.93	1.28	2.5	97.5	0.0	0.34	0.68	0.65	0.78	2.06	5035	650	5	0	11	0	0	logfile
✔	7F6G	31479	2024-09-24	2021-06-25	2.9	3.07	—	3.0	0.009	0.98	0.0	0.08	13.90	0.00	2.197	4.74	0.65	3.0	97.0	0.0	-0.57	0.67	0.78	2.90	3.0	0.002	0.58	0.0	0.04	15.80	0.00	2.498	4.97	2.48	2.3	97.7	0.0	1.02	1.11	0.65	0.81	1.99	8697	1061	6	0	7	0	0	logfile
✔	8oEF	16825	2024-09-26	2023-03-10	4.0	3.42	4.07	4.5	0.002	0.47	0.0	0.04	15.21	0.00	2.235	5.57	0.00	1.7	98.3	0.0	0.95	0.63	0.45	—	4.5	0.002	0.55	0.0	0.04	16.09	0.00	2.346	8.15	1.33	2.4	97.6	0.0	1.01	0.58	0.65	0.50	—	9687	612	1	0	0	0	4859	logfile
✔	8TEi	41187	2024-09-25	2023-07-06	2.58	2.31	2.45	2.6	0.025	0.69	0.0	0.04	21.72	0.01	2.028	3.45	0.00	1.6	98.4	0.0	2.53	0.66	0.84	3.91	2.6	0.002	0.51	0.0	0.04	18.94	0.00	2.493	4.71	1.18	1.6	98.4	0.0	2.50	0.92	0.66	0.88	3.56	9816	1108	6	0	24	214	0	logfile
✔	8SL6	40574	2024-09-30	2023-04-21	4.3	4.65	4.38	4.4	0.005	0.71	0.0	0.04	11.90	0.00	2.128	11.89	0.00	4.5	95.5	0.0	-1.39	0.70	0.79	—	4.4	0.002	0.56	0.0	0.04	11.65	0.00	2.517	5.72	0.00	3.7	96.3	0.0	2.20	1.79	0.69	0.78	—	23954	3634	4	0	0	0	0	logfile
✔	8oKD	16926	2024-09-24	2023-03-28	3.1	3.30	3.12	3.3	0.003	0.51	0.0	0.03	21.86	0.00	2.207	7.88	0.39	6.5	93.5	0.0	-0.76	0.56	0.62	2.28	3.2	0.002	0.52	0.0	0.03	21.60	0.00	2.541	3.94	3.12	4.7	95.3	0.0	-0.66	0.99	0.71	0.78	1.64	7748	582	4	140	0	0	0	logfile
✔	8ZFL	60064	2024-09-27	2024-05-08	2.61	2.71	2.56	2.8	0.003	0.51	0.0	0.04	16.53	0.00	2.236	3.12	0.69	2.1	97.9	0.0	1.07	0.69	0.87	4.20	2.8	0.002	0.60	0.0	0.05	16.89	0.00	2.628	2.95	1.71	2.0	98.0	0.0	2.43	0.55	0.73	0.90	4.31	17070	2060	20	0	25	0	0	logfile
✔	8JZL	36746	2024-09-29	2023-07-05	2.62	3.57	2.71	3.2	0.009	0.67	0.0	0.05	12.91	0.00	2.353	6.06	0.00	5.3	94.7	0.0	1.22	0.86	0.88	3.01	3.2	0.002	0.58	0.0	0.04	14.78	0.00	2.465	4.97	0.77	3.0	97.0	0.0	2.26	0.62	0.83	0.86	2.64	23184	2988	6	0	0	0	0	logfile
✔	9EM7	19812	2024-09-25	2024-03-07	3.6	4.42	3.88	4.0	0.001	0.36	0.0	0.04	8.21	0.00	1.964	4.68	0.15	1.6	98.4	0.0	2.73	0.87	0.74	0.77	4.0	0.002	0.47	0.0	0.03	12.87	0.00	2.354	35.00	1.25	1.9	98.1	0.0	2.71	0.92	0.90	0.83	0.60	57048	6336	8	0	0	0	6176	logfile
✔	9BiB	44586	2024-09-28	2024-04-23	3.81	4.09	3.87	4.0	0.004	0.63	12.0	0.06	7.50	0.00	2.200	3.34	4.65	3.0	96.9	0.1	-2.18	0.64	0.64	1.95	4.0	0.002	0.57	0.0	0.04	11.64	0.00	2.425	3.52	3.72	4.1	95.9	0.0	0.70	0.65	0.68	0.71	1.94	19269	3172	8	0	0	0	0	logfile
✔	8Y9B	39072	2024-09-26	2024-02-06	3.2	3.27	3.08	3.3	0.004	0.54	0.0	0.05	13.74	0.00	2.077	5.44	0.00	3.3	96.7	0.0	0.47	0.71	0.82	3.00	3.3	0.002	0.46	0.0	0.04	15.62	0.00	2.135	3.70	0.99	2.7	97.2	0.1	1.40	0.38	0.72	0.85	2.57	13380	1672	3	0	1	0	0	logfile
✔	7W7V	32349	2024-09-24	2021-12-06	3.0	2.82	3.01	3.0	0.003	0.56	0.0	0.04	13.32	0.00	2.010	8.84	0.00	2.5	97.5	0.0	0.63	0.59	0.73	1.18	3.0	0.002	0.55	0.0	0.04	16.79	0.00	2.022	7.57	2.89	2.4	97.6	0.0	0.93	0.56	0.61	0.76	1.68	7823	1012	2	0	2	0	0	logfile

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