Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5oH0	3809	2024-09-24	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.029	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.002	0.51	0.0	0.04	10.69	0.00	2.618	4.01	0.00	1.1	98.9	0.0	-1.82	0.63	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	7M74	23708	2024-09-26	2021-03-26	3.93	4.17	—	3.1	0.004	0.74	0.0	0.05	9.73	0.01	1.330	3.92	0.00	3.0	97.0	0.0	-3.25	0.91	0.78	1.54	3.1	0.002	0.68	0.0	0.04	12.89	0.00	2.498	9.36	0.96	3.0	97.0	0.0	-0.20	1.32	0.92	0.83	1.87	13457	1699	10	0	6	0	0	logfile
✔	7EoU	31231	2024-09-30	2021-04-22	4.3	4.50	—	4.2	0.002	0.45	0.0	0.04	9.12	0.00	2.243	9.16	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.002	0.64	0.0	0.04	11.36	0.00	2.419	11.23	0.00	5.5	94.5	0.1	-0.23	1.64	0.89	0.79	—	24593	3084	8	0	19	0	0	logfile
✔	7FCE	31525	2024-09-30	2021-07-14	3.1	3.19	—	3.1	0.010	0.98	0.0	0.07	12.93	0.01	2.343	1.98	0.99	4.6	95.3	0.2	-0.85	0.73	0.74	1.96	3.1	0.002	0.58	0.0	0.04	14.19	0.00	2.518	3.16	0.91	3.2	96.8	0.0	0.13	1.41	0.82	0.88	2.98	25542	3125	33	0	78	0	0	logfile
✔	7Si6	25138	2024-09-26	2021-10-12	3.32	3.28	—	3.3	0.003	1.22	0.0	0.04	13.58	0.00	2.044	4.51	0.00	1.4	98.6	0.0	2.88	0.46	0.77	1.67	3.3	0.002	0.85	0.0	0.04	15.00	0.00	1.922	3.03	0.69	2.3	97.7	0.0	2.65	0.41	0.50	0.82	1.77	13515	873	2	0	2	0	6910	logfile
✔	6J9E	9785	2024-09-30	2019-01-22	3.41	3.55	3.48	3.5	0.003	0.61	0.0	0.04	14.74	0.01	2.198	2.44	0.05	3.0	97.0	0.0	-3.74	0.76	0.79	1.49	3.5	0.002	0.59	0.0	0.04	16.98	0.00	2.132	4.78	2.35	2.9	97.1	0.0	0.22	0.61	0.79	0.83	1.55	24427	3203	11	63	3	0	0	logfile
✔	6UUS	20901	2024-09-25	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.002	0.57	0.0	0.04	17.68	0.00	2.556	7.34	2.15	3.3	96.7	0.0	0.70	0.97	0.63	0.78	3.35	9308	1190	7	0	0	0	0	logfile
✔	7PiU	13453	2024-09-24	2021-08-23	2.58	2.73	—	2.7	0.013	1.71	0.0	0.09	14.84	0.00	2.250	3.33	0.97	4.1	95.8	0.1	-2.07	0.70	0.88	4.78	2.7	0.002	0.53	0.0	0.04	16.28	0.00	2.524	4.63	1.46	1.9	98.1	0.0	2.02	0.94	0.69	0.88	4.28	7788	974	14	0	3	88	0	logfile
✔	7WBU	32406	2024-09-26	2021-12-17	3.42	3.70	—	3.6	0.003	0.59	1.0	0.04	15.37	0.01	2.145	7.00	0.37	2.2	97.8	0.0	0.89	0.67	0.73	1.75	3.6	0.002	0.62	0.0	0.04	17.00	0.00	2.443	7.00	2.20	2.5	97.5	0.0	0.75	0.51	0.69	0.78	1.86	7170	898	2	0	1	0	0	logfile
✔	6T8H	10401	2024-09-28	2019-10-24	3.77	3.90	3.76	3.8	0.012	1.09	1.0	0.07	11.30	0.01	1.696	39.00	0.94	8.6	91.3	0.1	-3.78	0.81	0.82	2.42	3.8	0.002	0.62	0.0	0.05	16.26	0.00	1.982	48.00	2.27	4.8	95.2	0.0	-0.01	0.97	0.81	0.82	1.63	19398	2346	9	34	5	0	33	logfile
✔	7PXD	13698	2024-09-28	2021-10-08	4.0	2.58	—	2.8	0.006	0.93	0.0	0.05	14.20	0.01	2.068	8.55	3.29	4.0	95.9	0.1	-1.07	0.68	0.67	—	2.8	0.002	0.57	0.0	0.04	15.56	0.00	2.023	5.88	1.49	2.5	97.5	0.0	1.99	0.78	0.71	0.70	—	68900	9015	42	0	12	0	0	logfile
✔	7R88	24311	2024-09-25	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	3.7	0.002	0.58	0.0	0.04	14.97	0.00	2.421	4.56	2.29	4.1	95.9	0.0	1.46	1.01	0.70	0.88	2.68	10787	1368	4	0	0	0	0	logfile
✔	6N23	9321	2024-09-26	2018-11-12	3.1	3.91	—	3.6	0.008	0.78	0.0	0.05	9.58	0.01	2.040	2.43	0.00	3.3	96.7	0.0	-5.52	0.79	0.87	4.09	3.6	0.002	0.56	0.0	0.04	12.47	0.00	2.377	3.81	0.98	2.0	98.0	0.0	2.05	2.23	0.73	0.85	2.90	14935	1815	10	0	5	0	0	logfile
✔	7PX8	13691	2024-09-29	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.53	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.51	0.0	0.04	13.55	0.00	2.580	3.43	0.72	2.5	97.5	0.0	-0.01	0.19	0.80	0.88	3.34	21409	2798	4	0	0	0	0	logfile
✔	7P13	13154	2024-09-26	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	2.1	0.002	0.44	0.0	0.03	17.09	0.00	2.472	15.03	1.44	2.3	97.7	0.0	5.41	0.51	0.83	0.87	3.25	13727	1743	7	0	0	0	154	logfile
✔	7PiM	13442	2024-09-26	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	6.0	0.002	0.52	0.0	0.04	11.97	0.00	2.029	59.38	0.00	2.5	97.5	0.0	0.50	1.51	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7X96	33068	2024-09-24	2022-03-15	3.4	4.29	3.35	4.0	0.003	0.61	0.0	0.04	15.74	0.00	2.101	5.71	0.00	8.8	91.2	0.0	-1.35	0.74	0.82	3.22	4.0	0.002	0.54	0.0	0.04	14.60	0.00	2.328	4.81	1.91	8.8	91.2	0.0	-0.88	4.26	0.73	0.81	3.22	6586	427	4	0	6	0	3184	logfile
✔	6N24	9322	2024-09-26	2018-11-12	3.0	3.88	—	3.7	0.007	0.78	0.0	0.05	9.04	0.01	2.332	3.60	0.29	3.6	96.4	0.0	-6.07	0.73	0.84	3.71	3.8	0.002	0.64	0.0	0.04	13.73	0.00	2.584	5.66	1.08	1.9	98.1	0.0	0.33	2.28	0.63	0.72	2.77	12643	1530	5	0	0	0	0	logfile
✔	7WBL	32405	2024-09-25	2021-12-17	3.4	3.46	—	3.5	0.004	0.60	0.0	0.04	15.43	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.55	0.0	0.04	16.36	0.00	2.500	4.34	1.44	2.8	97.1	0.1	1.17	0.33	0.67	0.79	1.40	6484	791	3	0	5	0	0	logfile
✔	7E8G	31018	2024-09-29	2021-03-01	4.5	3.95	4.35	3.7	0.003	0.59	0.0	0.04	13.53	0.00	2.124	16.97	0.08	8.2	91.7	0.1	-1.30	0.79	0.72	—	3.7	0.002	0.60	0.0	0.04	13.98	0.00	2.026	11.11	0.00	8.8	91.2	0.0	-1.58	1.77	0.79	0.70	—	23528	2916	4	0	0	0	0	logfile

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