Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Xo9	38523	2024-09-23	2023-12-31	3.2	3.60	3.34	3.6	0.004	0.74	0.0	0.04	14.59	0.01	2.284	5.40	0.00	2.6	97.4	0.0	1.96	0.52	0.81	2.01	3.6	0.003	0.71	0.0	0.04	15.13	0.01	2.581	4.22	2.64	2.3	97.7	0.0	2.58	0.96	0.47	0.78	1.53	2908	392	2	0	1	0	0	logfile
✔	8SGZ	40474	2024-09-24	2023-04-13	3.2	2.69	3.12	3.1	0.004	0.79	0.0	0.05	13.30	0.00	2.154	15.29	1.21	7.4	92.6	0.1	-1.59	0.68	0.74	2.17	2.9	0.002	0.61	0.0	0.04	15.43	0.00	2.531	7.21	2.10	4.2	95.8	0.0	-0.77	1.35	0.72	0.82	2.19	53430	6876	18	0	6	0	0	logfile
✔	8F8R	28934	2024-09-29	2022-11-22	3.3	4.00	3.48	3.7	0.005	0.96	0.0	0.05	15.05	0.01	2.042	3.66	0.00	2.5	97.5	0.0	-1.91	0.83	0.87	2.13	3.7	0.003	0.60	0.0	0.04	14.51	0.00	1.967	4.96	0.50	3.1	96.9	0.0	1.32	1.15	0.83	0.88	1.93	20526	2601	14	0	14	0	0	logfile
✔	8BMQ	16121	2024-09-24	2022-11-10	3.6	3.94	3.58	4.0	0.006	0.76	0.0	0.05	15.48	0.00	2.190	7.37	0.00	5.5	94.5	0.0	-0.07	0.72	0.81	2.32	3.9	0.006	0.65	0.0	0.05	15.96	0.00	2.151	7.18	1.80	6.5	93.5	0.0	0.34	0.33	0.69	0.81	1.62	7784	987	6	0	3	0	0	logfile
✔	8GJL	40093	2024-09-30	2023-03-16	3.44	3.94	3.54	3.8	0.004	0.69	0.0	0.04	14.15	0.00	2.075	8.42	0.65	2.2	97.8	0.0	1.44	0.80	0.84	1.67	3.8	0.004	0.72	0.0	0.05	15.09	0.00	2.388	11.05	1.72	1.8	98.2	0.0	1.19	1.17	0.79	0.84	1.66	23916	3096	4	0	1	0	0	logfile
✔	8K4P	36889	2024-09-24	2023-07-20	2.81	3.21	2.94	3.2	0.003	0.58	0.0	0.04	17.49	0.00	2.120	6.56	2.53	3.5	96.5	0.0	0.06	0.63	0.87	2.55	3.2	0.003	0.54	0.0	0.04	17.45	0.00	2.580	4.14	3.42	3.6	96.4	0.0	0.85	0.37	0.63	0.87	2.61	7231	918	4	0	0	0	0	logfile
✔	7XYM	33522	2024-09-26	2022-06-01	3.3	3.70	3.42	3.6	0.009	1.58	6.0	0.07	14.87	0.01	1.028	29.59	0.49	25.5	71.6	2.9	-6.19	0.71	0.74	1.93	3.6	0.004	1.03	0.0	0.05	16.52	0.01	2.132	19.03	1.29	23.9	74.2	1.9	-4.60	1.43	0.69	0.78	2.13	11436	1464	3	0	0	0	0	logfile
✔	8GP3	34188	2024-09-26	2022-08-25	4.8	5.31	4.80	4.9	0.004	0.65	0.0	0.04	13.23	0.00	2.102	10.90	0.00	3.4	96.6	0.0	0.13	0.87	0.81	—	4.9	0.004	0.71	0.0	0.04	13.17	0.00	2.473	13.57	0.00	4.5	95.4	0.1	-0.31	1.03	0.87	0.82	—	11494	1522	8	0	0	0	0	logfile
✔	8JV5	36668	2024-09-24	2023-06-27	3.23	3.50	3.16	3.4	0.005	0.63	0.0	0.04	12.60	0.00	2.312	5.16	0.76	2.9	97.1	0.0	0.88	0.65	0.80	2.90	3.5	0.003	0.59	0.0	0.04	14.33	0.00	2.606	5.85	2.28	2.2	97.8	0.0	0.86	0.96	0.64	0.81	2.90	7480	949	6	0	12	0	0	logfile
✔	8F0H	28757	2024-09-23	2022-11-02	3.18	3.63	3.09	3.5	0.003	0.50	0.0	0.04	10.68	0.00	2.256	7.02	0.38	4.0	96.0	0.0	-0.58	0.74	0.80	3.08	3.5	0.003	0.73	0.0	0.04	14.24	0.01	2.444	9.19	3.20	5.1	94.9	0.0	-1.12	1.36	0.73	0.81	2.64	4959	634	6	0	3	0	0	logfile
✔	8DHX	27437	2024-09-26	2022-06-28	2.92	3.26	3.25	6.7	0.004	0.82	0.0	0.04	17.61	0.00	2.218	6.05	1.95	1.8	97.7	0.6	3.55	0.41	0.20	4.09	3.3	0.003	0.62	0.0	0.03	18.30	0.00	2.625	6.06	2.27	2.3	97.7	0.0	5.48	0.44	0.70	0.78	3.35	34200	4152	24	0	0	0	0	logfile
✔	8SK7	40557	2024-09-30	2023-04-18	2.93	3.62	2.93	3.4	0.004	0.53	0.0	0.05	11.94	0.00	2.303	1.32	0.45	1.3	98.7	0.0	1.18	0.78	0.74	4.01	3.4	0.004	0.55	0.0	0.04	13.17	0.00	2.366	2.72	1.26	3.5	96.5	0.0	0.57	2.19	0.81	0.84	3.79	25404	1653	18	0	27	0	12267	logfile
✔	8PE8	17629	2024-09-25	2023-06-13	3.46	3.95	3.86	3.9	0.002	0.53	0.0	0.04	18.53	0.00	2.221	11.61	0.48	3.4	96.6	0.0	0.65	0.71	0.77	0.76	3.9	0.002	0.59	0.0	0.04	18.65	0.00	2.475	9.62	4.74	3.5	96.5	0.0	0.64	0.38	0.74	0.81	0.57	54782	7392	14	0	0	0	0	logfile
✔	8WDA	37459	2024-09-27	2023-09-14	3.26	3.59	3.32	3.5	0.004	0.72	1.0	0.05	14.24	0.00	2.231	7.11	0.55	8.9	91.0	0.1	-4.40	0.75	0.88	2.94	3.5	0.004	0.88	0.0	0.04	15.06	0.00	2.418	4.66	1.18	7.2	92.8	0.0	-1.24	0.34	0.72	0.89	2.59	12359	1626	6	0	2	0	0	logfile
✔	8BMP	16120	2024-09-24	2022-11-10	3.2	3.48	3.25	3.5	0.003	0.64	0.0	0.04	14.23	0.00	2.246	6.03	0.00	2.5	97.5	0.0	0.66	0.69	0.84	3.03	3.5	0.003	0.58	0.0	0.04	15.29	0.00	2.491	5.02	0.48	2.5	97.5	0.0	1.42	0.28	0.63	0.80	2.30	7794	989	6	0	3	0	0	logfile
✔	7YTY	34095	2024-09-24	2022-08-16	3.5	3.88	3.47	3.9	0.009	1.18	0.0	0.06	13.29	0.01	2.027	7.48	0.00	4.0	96.0	0.0	-1.66	0.56	0.77	2.02	3.9	0.004	0.66	0.0	0.04	15.59	0.00	2.549	11.58	3.86	4.9	95.1	0.0	0.70	0.49	0.61	0.80	1.36	7608	1002	2	0	0	0	0	logfile
✔	8GHV	40052	2024-09-27	2023-03-12	2.8	3.09	2.84	3.1	0.005	0.74	0.0	0.05	13.62	0.01	2.190	3.46	0.76	3.3	96.7	0.0	0.26	0.59	0.79	3.50	3.1	0.003	0.58	0.0	0.04	14.50	0.00	2.371	2.01	1.52	4.2	95.8	0.0	0.93	0.98	0.67	0.85	4.08	15874	1125	6	0	1	0	7637	logfile
✔	7T5Q	25707	2024-09-29	2021-12-13	3.4	2.43	3.36	2.1	0.005	0.86	0.0	0.05	13.79	0.01	1.984	2.02	0.08	5.4	94.6	0.0	-1.49	0.75	0.76	2.01	2.1	0.003	0.64	0.0	0.04	16.17	0.00	1.975	6.40	2.49	5.3	94.7	0.0	-0.33	0.96	0.76	0.77	1.67	21671	2703	13	0	6	0	0	logfile
✔	8G4E	29718	2024-09-23	2023-02-09	2.98	3.13	2.86	3.1	0.003	0.53	0.0	0.04	15.97	0.00	2.266	7.32	2.16	2.3	97.7	0.0	0.43	0.59	0.82	2.62	3.1	0.003	0.61	0.0	0.04	17.73	0.00	2.373	5.53	5.56	3.1	96.9	0.0	1.17	0.39	0.58	0.82	2.24	3097	396	3	0	1	0	0	logfile
✔	8Q7V	18234	2024-09-24	2023-08-17	3.8	4.29	3.95	3.8	0.005	0.93	1.0	0.05	13.73	0.01	1.841	2.95	0.13	4.1	95.8	0.1	-2.94	0.76	0.66	0.71	3.8	0.004	0.66	0.0	0.04	15.39	0.00	1.654	6.06	0.84	6.5	93.5	0.0	-0.68	2.41	0.77	0.73	1.50	52613	3488	16	104	2	0	24559	logfile

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