Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oMM	20126	2024-09-25	2019-04-19	3.17	3.31	—	3.3	0.005	0.93	0.0	0.06	9.85	0.01	2.222	4.84	0.00	3.1	96.9	0.0	-2.94	0.67	0.83	3.35	3.3	0.003	0.66	0.0	0.04	14.13	0.00	2.376	11.54	2.77	2.9	97.1	0.0	0.00	1.30	0.66	0.84	2.66	9134	1142	7	0	8	0	0	logfile
✔	6V5B	21051	2024-09-26	2019-12-04	3.7	4.57	—	4.4	0.007	1.10	1.0	0.06	18.49	0.01	1.972	10.05	0.50	11.7	88.2	0.2	-4.89	0.78	0.78	1.78	4.4	0.003	0.76	0.0	0.04	19.08	0.00	2.040	12.03	2.50	9.3	90.6	0.1	-1.68	1.33	0.79	0.79	1.36	12563	1341	5	78	3	0	0	logfile
✔	6NUS	0521	2024-09-24	2019-02-01	3.5	3.62	3.47	3.6	0.016	1.57	0.0	0.09	9.78	0.01	2.301	0.99	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.003	0.65	0.0	0.04	15.02	0.00	2.570	10.15	3.02	2.0	98.0	0.0	0.58	1.48	0.53	0.71	1.43	6632	827	3	0	2	0	0	logfile
✔	6BBM	7076	2024-09-30	2017-10-18	4.1	4.24	—	4.1	0.008	1.20	0.0	0.06	16.70	0.01	2.231	9.86	0.58	13.8	86.1	0.2	-5.97	0.74	0.74	—	4.1	0.004	0.82	0.0	0.05	15.31	0.00	2.448	13.34	0.00	12.9	87.1	0.0	-3.24	0.78	0.75	0.74	—	23956	2662	15	0	623	0	0	logfile
✔	7AHH	11786	2024-09-26	2020-09-24	3.5	3.59	3.55	3.6	0.008	0.97	0.0	0.07	14.62	0.00	2.213	14.34	0.23	7.6	92.4	0.0	-1.56	0.70	0.79	2.43	3.6	0.003	0.65	0.0	0.04	15.86	0.00	2.525	7.74	1.74	3.3	96.7	0.0	0.66	1.19	0.71	0.81	1.95	12125	1562	7	0	4	0	0	logfile
✔	7oGR	12886	2024-09-26	2021-05-07	3.0	3.10	2.89	3.1	0.003	0.69	0.0	0.05	13.65	0.01	2.309	3.41	0.00	5.2	94.8	0.0	-4.69	0.68	0.80	2.46	3.1	0.003	0.61	0.0	0.04	16.25	0.00	2.481	5.93	1.77	4.8	95.2	0.0	-0.88	1.02	0.69	0.84	2.48	14135	1775	7	0	1	0	0	logfile
✔	5oNV	3835	2024-09-27	2017-08-04	4.1	4.21	3.90	4.1	0.013	1.56	0.0	0.07	11.90	0.02	1.996	2.82	0.00	6.3	90.2	3.6	-2.61	0.68	0.83	—	4.1	0.005	0.82	0.0	0.05	13.82	0.00	1.892	11.80	0.00	5.6	94.2	0.2	0.01	1.54	0.68	0.85	—	14640	1855	10	0	10	0	0	logfile
✔	7XBX	33108	2024-09-26	2022-03-22	3.4	3.54	3.19	3.5	0.004	0.51	0.0	0.04	12.58	0.00	2.232	6.35	0.16	2.1	97.9	0.0	1.35	0.55	0.61	0.76	3.5	0.003	0.54	0.0	0.04	14.96	0.00	2.294	9.33	2.50	3.8	96.2	0.0	0.61	0.71	0.57	0.66	1.25	12644	909	5	0	2	0	6028	logfile
✔	6WB2	21585	2024-09-24	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	16.51	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.003	0.58	0.0	0.04	16.75	0.00	2.143	8.44	0.17	3.4	96.6	0.0	-0.37	0.64	0.87	0.83	—	8407	946	4	75	0	0	0	logfile
✔	6PQR	20452	2024-09-25	2019-07-09	3.4	3.86	—	3.8	0.009	0.84	0.0	0.05	22.10	0.00	2.081	16.18	0.24	3.3	96.7	0.0	-3.38	0.74	0.80	2.06	3.8	0.003	0.60	0.0	0.04	22.02	0.00	2.031	12.19	1.09	4.1	95.9	0.0	-0.66	0.52	0.70	0.78	1.50	9266	936	8	88	6	0	0	logfile
✔	7RZH	24760	2024-09-27	2021-08-27	3.8	3.54	—	3.2	0.012	1.50	6.0	0.11	14.19	0.00	1.444	15.94	5.29	2.6	97.3	0.2	2.98	0.66	0.54	0.28	3.2	0.004	0.79	0.0	0.04	16.56	0.00	2.394	17.55	3.48	3.8	96.1	0.1	-0.28	3.17	0.72	0.64	0.46	15300	1867	2	0	0	0	0	logfile
✔	6E1M	8957	2024-09-25	2018-07-10	3.3	3.50	3.31	3.6	0.018	1.61	0.0	0.08	14.98	0.01	1.976	8.65	0.11	8.4	91.5	0.1	-5.95	0.50	0.74	3.94	3.6	0.004	0.79	0.0	0.04	15.83	0.00	2.303	10.95	2.34	5.6	94.4	0.0	-0.42	0.71	0.55	0.77	2.24	8913	1072	6	0	23	2	0	logfile
✔	6X14	21988	2024-09-25	2020-05-18	3.71	3.82	—	3.8	0.008	1.10	0.0	0.05	18.68	0.01	2.282	6.68	0.00	3.2	96.8	0.0	-4.81	0.62	0.83	1.45	3.9	0.003	0.63	0.0	0.04	16.56	0.00	2.622	7.30	2.27	2.8	97.2	0.0	0.82	1.18	0.62	0.83	1.08	9486	1239	6	0	9	0	0	logfile
✔	5VN3	8713	2024-09-29	2017-04-28	3.7	3.93	3.74	3.8	0.010	1.23	0.0	0.07	16.11	0.01	2.235	6.36	0.12	10.8	88.8	0.4	-5.03	0.73	0.79	2.37	3.8	0.003	0.70	0.0	0.04	13.12	0.00	2.416	7.15	1.71	7.1	92.7	0.2	-1.96	0.74	0.75	0.82	1.89	23727	2814	54	0	129	0	0	logfile
✔	6VYi	21461	2024-09-24	2020-02-26	3.0	3.28	—	3.2	0.010	0.94	0.0	0.05	19.28	0.00	2.157	10.66	0.00	11.2	88.8	0.0	-2.99	0.66	0.87	2.91	3.2	0.003	0.64	0.0	0.04	18.86	0.00	2.467	7.72	2.38	6.5	93.5	0.0	1.16	0.60	0.59	0.86	1.85	6916	812	4	0	4	0	0	logfile
✔	5BKG	9404	2024-09-26	2021-03-19	3.8	3.93	—	4.0	0.004	0.58	0.0	0.04	12.91	0.00	2.044	8.32	0.21	6.2	93.8	0.0	-3.60	0.68	0.82	2.85	4.0	0.003	0.70	0.0	0.04	15.81	0.00	2.476	8.43	3.71	3.8	96.2	0.0	-0.55	0.62	0.70	0.85	2.08	13509	1689	10	0	9	0	0	logfile
✔	7KDT	22829	2024-09-24	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.003	0.52	0.0	0.03	17.13	0.00	2.294	4.47	0.93	1.8	98.2	0.0	2.93	2.12	0.66	0.78	2.31	8064	505	2	0	0	0	4042	logfile
✔	6GSA	0051	2024-09-27	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.69	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.004	0.74	0.0	0.04	12.53	0.00	2.386	16.95	0.00	5.3	94.7	0.0	-0.25	1.21	0.83	0.73	—	16272	1999	5	0	0	0	0	logfile
✔	7SAZ	24959	2024-09-23	2021-09-23	3.0	3.13	2.81	3.1	0.004	0.63	0.0	0.04	13.70	0.00	2.188	9.47	0.00	3.7	96.2	0.1	0.22	0.63	0.85	2.55	3.1	0.003	0.54	0.0	0.04	17.14	0.00	2.609	7.10	2.38	2.8	97.2	0.0	1.86	0.47	0.62	0.86	1.80	5708	722	7	0	0	0	0	logfile
✔	6SH4	10193	2024-09-26	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.70	0.0	0.04	4.38	0.00	2.612	0.37	0.00	7.8	92.2	0.0	0.03	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile

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