Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RWY	19568	2024-09-26	2024-02-05	3.02	3.74	3.11	3.5	0.003	0.49	0.0	0.04	13.42	0.00	2.218	5.36	0.07	2.2	97.6	0.1	1.41	0.88	0.90	3.43	3.5	0.003	0.54	0.0	0.04	14.15	0.00	2.592	3.55	0.42	2.2	97.8	0.1	1.12	0.25	0.88	0.91	3.08	14109	1837	12	0	6	0	0	logfile
✔	8K25	36828	2024-09-25	2023-07-12	3.4	3.65	3.55	3.6	0.005	1.14	0.0	0.06	18.39	0.01	2.271	7.89	0.69	7.2	92.8	0.1	-3.18	0.63	0.52	0.39	3.6	0.003	0.69	0.0	0.04	18.44	0.00	2.518	14.29	4.14	6.8	93.2	0.1	-0.76	0.52	0.67	0.60	0.96	9961	1330	8	34	0	0	0	logfile
✔	8YF1	39207	2024-09-25	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.59	0.0	0.04	16.72	0.00	2.605	9.63	1.96	2.4	97.6	0.0	1.43	0.30	0.43	0.64	0.59	9187	1156	4	0	2	0	0	logfile
✔	8JX9	36693	2024-09-26	2023-06-30	3.8	3.45	3.73	3.4	0.004	0.80	0.0	0.05	17.92	0.01	2.145	6.88	2.26	7.8	92.1	0.1	-1.05	0.64	0.68	1.57	3.4	0.004	0.66	0.0	0.05	15.72	0.00	2.153	5.11	1.94	8.4	91.6	0.0	-0.96	0.37	0.67	0.70	1.53	11822	1439	11	0	56	0	0	logfile
✔	8TPW	41495	2024-09-27	2023-08-05	3.46	4.44	3.53	3.6	0.003	0.50	0.0	0.04	14.06	0.00	2.188	7.30	1.46	4.3	95.6	0.0	1.20	0.93	0.89	1.61	3.6	0.002	0.52	0.0	0.04	14.48	0.00	2.527	4.74	1.51	3.7	96.2	0.0	1.39	0.28	0.93	0.89	1.47	17254	2290	5	0	0	0	0	logfile
✔	8VoV	43392	2024-09-26	2024-01-16	3.6	3.53	1.87	3.7	0.012	0.88	0.0	0.04	18.13	0.00	1.985	4.60	0.07	4.2	95.8	0.0	1.83	0.68	0.84	1.09	3.7	0.003	0.57	0.0	0.04	17.71	0.00	2.482	2.77	1.57	3.2	96.8	0.0	1.98	0.39	0.68	0.84	1.11	13998	1734	12	0	12	0	0	logfile
✔	8WMA	37647	2024-09-23	2023-10-03	3.47	2.40	3.36	2.3	0.007	0.80	0.0	0.05	11.97	0.00	1.739	5.91	0.31	4.4	95.6	0.0	-0.62	0.68	0.73	3.00	2.0	0.004	0.63	0.0	0.04	14.99	0.00	2.535	7.03	2.48	3.7	96.3	0.0	0.70	0.43	0.70	0.74	2.30	3172	413	2	0	0	0	0	logfile
✔	9CiA	45615	2024-09-24	2024-07-03	3.39	3.87	3.61	3.8	0.004	0.80	0.0	0.05	13.15	0.01	2.263	5.57	0.12	4.4	95.6	0.0	-1.69	0.58	0.73	2.21	3.8	0.005	0.73	0.0	0.04	16.14	0.00	2.461	12.36	5.31	5.9	94.1	0.0	-0.53	0.56	0.60	0.75	1.65	7918	1025	13	0	1	0	0	logfile
✔	8V0V	42871	2024-09-30	2023-11-17	3.1	3.36	3.20	3.4	0.005	0.81	0.0	0.06	14.52	0.01	2.286	3.19	0.00	5.1	94.8	0.1	-1.56	0.63	0.79	2.60	3.4	0.004	0.59	0.0	0.04	15.26	0.00	2.426	3.98	1.47	4.8	95.1	0.1	-0.26	0.31	0.65	0.81	2.45	25051	3132	12	0	41	0	0	logfile
✔	8EQV	28547	2024-09-26	2022-10-09	3.64	4.53	3.76	4.0	0.003	0.78	0.0	0.04	16.23	0.00	2.188	12.26	0.13	8.3	91.5	0.2	-1.97	0.88	0.83	1.37	4.0	0.004	0.66	0.0	0.04	16.44	0.00	2.497	7.76	1.92	7.2	92.6	0.2	-0.76	0.59	0.88	0.84	1.60	13974	1765	5	0	0	0	0	logfile
✔	9B5o	44219	2024-09-25	2024-03-22	3.19	3.62	3.24	3.5	0.003	0.44	0.0	0.04	9.28	0.00	2.022	1.37	0.85	1.7	98.3	0.0	1.47	0.80	0.83	2.96	3.5	0.003	0.57	0.0	0.04	13.09	0.00	1.935	3.90	1.32	1.5	98.5	0.0	1.61	1.25	0.76	0.81	2.58	9527	1207	5	0	4	0	0	logfile
✔	8V0Q	42866	2024-09-30	2023-11-17	3.9	4.16	3.93	4.1	0.004	0.82	0.0	0.06	14.49	0.01	2.279	3.47	0.00	4.7	95.3	0.0	-1.79	0.78	0.79	1.36	4.1	0.005	0.68	0.0	0.05	15.34	0.00	2.483	7.53	1.60	6.0	93.9	0.0	-0.64	0.44	0.79	0.81	1.22	24795	3105	12	0	42	0	0	logfile
✔	9B5D	44208	2024-09-25	2024-03-22	2.8	3.27	2.87	3.2	0.004	0.47	0.0	0.04	9.74	0.00	2.012	1.39	1.06	1.5	98.5	0.0	1.46	0.73	0.79	3.66	3.2	0.003	0.53	0.0	0.04	13.73	0.00	1.946	3.17	1.15	1.3	98.7	0.0	1.50	1.15	0.79	0.87	3.04	10128	1283	6	0	4	0	0	logfile
✔	9EUP	19979	2024-09-27	2024-03-27	3.0	3.45	3.02	3.4	0.010	0.82	0.0	0.05	13.77	0.01	2.130	5.45	0.12	3.3	96.7	0.0	-1.46	0.67	0.83	4.18	3.4	0.004	0.57	0.0	0.04	14.30	0.01	2.119	4.72	1.11	3.1	96.9	0.0	0.43	0.34	0.56	0.77	3.49	14966	965	4	0	6	0	7364	logfile
✔	8UQ6	42462	2024-09-25	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	5.5	0.004	0.87	0.0	0.05	16.60	0.01	2.351	7.50	2.38	20.0	79.5	0.5	-3.96	2.37	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	9B58	44203	2024-09-23	2024-03-22	3.39	3.89	3.38	3.8	0.003	0.45	0.0	0.04	10.33	0.00	1.812	3.00	1.10	4.2	95.8	0.0	0.81	0.81	0.81	2.15	3.8	0.004	0.62	0.0	0.04	13.59	0.00	2.455	6.71	1.84	3.9	96.1	0.0	0.57	0.59	0.85	0.85	1.54	4871	599	4	0	1	0	0	logfile
✔	8V0o	42863	2024-09-30	2023-11-17	3.3	3.45	3.42	3.5	0.005	0.77	1.0	0.06	14.09	0.01	2.264	2.93	0.00	4.7	95.3	0.1	-1.71	0.69	0.81	3.21	3.5	0.003	0.56	0.0	0.04	14.92	0.00	2.484	3.70	1.45	4.5	95.5	0.0	-0.22	0.33	0.70	0.84	2.90	24879	3105	15	0	48	0	0	logfile
✔	8WLY	37635	2024-09-29	2023-10-01	3.96	3.42	3.82	3.3	0.005	0.85	0.0	0.06	15.95	0.01	2.208	11.71	1.06	4.5	95.4	0.1	-0.56	0.76	0.73	1.49	3.3	0.005	0.70	0.0	0.05	15.51	0.00	2.436	9.49	3.47	5.5	94.4	0.1	-0.59	1.17	0.76	0.75	1.16	22598	2808	22	0	54	0	0	logfile
✔	9CC0	45430	2024-09-30	2024-06-20	3.31	3.66	3.24	3.5	0.003	0.54	0.0	0.04	13.25	0.00	1.995	5.51	0.08	1.9	98.1	0.0	1.17	0.83	0.85	2.83	3.5	0.004	0.57	0.0	0.04	14.72	0.00	1.912	5.16	1.17	1.9	98.1	0.0	1.35	0.32	0.84	0.88	2.27	24603	3128	13	0	22	0	0	logfile
✔	9ASL	43818	2024-09-29	2024-02-26	3.5	3.93	3.52	3.9	0.003	0.66	0.0	0.04	18.71	0.01	2.155	16.35	0.48	5.1	94.9	0.0	-1.52	0.76	0.75	1.34	3.8	0.003	0.67	0.0	0.04	18.48	0.00	2.507	11.72	3.83	4.6	95.4	0.0	-0.49	1.19	0.75	0.77	0.97	23128	2964	4	0	0	0	0	logfile

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