Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oHC	12900	2024-09-25	2021-05-10	2.5	3.15	—	2.9	0.005	0.86	0.0	0.05	29.62	0.01	2.193	4.51	0.16	1.9	98.1	0.0	0.04	0.84	0.82	3.50	2.9	0.005	0.60	0.0	0.03	28.62	0.00	2.184	7.48	2.20	2.0	98.0	0.0	2.71	1.12	0.86	0.86	3.06	12019	764	10	290	0	0	0	logfile
✔	6oFF	20044	2024-09-25	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.003	0.53	0.0	0.03	15.65	0.00	2.470	5.42	0.93	3.8	96.2	0.0	3.79	0.62	0.61	0.88	3.79	11016	1404	18	0	0	0	0	logfile
✔	7NL0	12453	2024-09-25	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.74	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.004	0.60	0.0	0.03	29.61	0.00	2.505	9.74	1.91	3.1	96.9	0.0	2.58	0.28	0.77	0.81	2.99	11363	755	10	262	0	0	0	logfile
✔	7TX6	26155	2024-09-23	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	17.01	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.6	0.002	0.66	1.0	0.03	15.22	0.00	2.610	7.01	1.56	2.5	97.5	0.0	3.45	1.18	0.53	0.77	2.49	3169	398	2	0	2	0	0	logfile
✔	8ET7	28587	2024-09-24	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.54	0.0	0.03	15.63	0.00	2.406	6.34	2.83	4.0	96.0	0.0	2.28	1.49	0.48	0.71	1.46	8111	532	3	0	3	0	4007	logfile
✔	6UPH	20839	2024-09-25	2019-10-17	2.7	3.01	2.85	3.0	0.007	0.67	0.0	0.04	26.07	0.00	2.216	4.33	0.00	1.8	98.2	0.0	-5.67	0.70	0.87	4.13	3.0	0.003	0.59	0.0	0.03	27.23	0.00	2.090	3.61	1.29	0.8	99.2	0.0	1.35	0.35	0.66	0.87	2.31	10677	732	10	238	0	0	0	logfile
✔	6X0U	21984	2024-09-23	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.68	0.0	0.03	17.96	0.00	2.555	6.38	2.63	3.7	96.3	0.0	1.12	0.78	0.27	0.78	2.63	3091	398	4	0	0	0	0	logfile
✔	6SEG	10155	2024-09-25	2019-07-30	3.1	3.19	—	3.2	0.006	0.86	0.0	0.05	27.75	0.01	2.283	3.10	0.00	1.3	98.7	0.0	-3.47	0.66	0.79	3.38	3.2	0.004	0.58	0.0	0.03	28.46	0.00	2.184	6.91	1.84	1.5	98.5	0.0	1.49	0.35	0.66	0.81	2.36	11689	728	10	290	0	0	0	logfile
✔	8EXA	28656	2024-09-23	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.58	0.00	2.495	12.36	2.83	3.3	96.7	0.0	0.89	1.14	0.60	0.68	3.79	5539	341	4	139	0	0	0	logfile
✔	7XSN	33428	2024-09-24	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.63	0.0	0.03	24.72	0.00	2.130	17.85	0.00	0.0	0.0	0.0	—	0.29	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	8i7N	35223	2024-09-24	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.53	0.0	0.03	23.01	0.00	1.950	4.52	0.00	0.0	0.0	0.0	—	0.91	0.87	0.91	—	8979	0	2	418	29	0	0	logfile
✔	8DMB	27533	2024-09-26	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	23.25	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.54	0.0	0.03	23.44	0.01	1.993	1.97	1.48	2.5	97.5	0.0	0.63	0.56	0.69	0.83	4.50	14225	328	5	275	2	0	5728	logfile
✔	6YE4	10789	2024-09-25	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	15.50	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.49	0.0	0.03	16.53	0.00	2.584	5.02	1.11	2.1	97.9	0.0	4.11	0.92	0.65	0.85	1.50	9140	1180	10	0	5	0	0	logfile
✔	6L3U	0826	2024-09-28	2019-10-15	2.53	2.59	2.48	2.6	0.010	0.96	0.0	0.05	17.46	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.53	0.0	0.03	15.63	0.00	2.496	1.25	0.60	1.4	98.6	0.0	2.93	0.89	0.62	0.85	3.16	19698	1206	18	0	12	174	9588	logfile
✔	6MEC	9106	2024-09-29	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	25.56	0.01	1.659	15.45	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.005	0.69	0.0	0.03	25.22	0.01	1.789	13.91	2.54	8.8	91.2	0.0	-1.93	0.93	0.86	0.81	1.96	21276	414	5	832	52	0	0	logfile
✔	7Jo9	22408	2024-09-27	2020-08-06	3.3	3.00	—	3.2	0.008	0.74	0.0	0.04	25.95	0.01	2.222	4.80	0.41	5.1	94.9	0.0	0.34	0.79	0.82	1.58	3.2	0.003	0.57	0.0	0.03	26.36	0.00	2.486	4.52	1.24	2.2	97.8	0.0	1.79	0.63	0.82	0.86	1.89	14994	1125	12	290	1	0	0	logfile
✔	8E55	27903	2024-09-26	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.62	0.0	0.03	16.54	0.00	2.356	9.84	1.34	1.7	98.3	0.0	4.21	1.46	0.69	0.71	-0.11	12176	780	4	0	0	0	6104	logfile
✔	6YSZ	10911	2024-09-27	2020-04-23	3.6	2.67	—	3.8	0.004	0.56	0.0	0.04	15.54	0.00	2.295	11.00	0.38	2.9	97.1	0.0	-1.45	0.80	0.81	1.22	3.9	0.002	0.55	0.0	0.03	17.58	0.00	2.468	7.09	3.13	1.1	98.9	0.0	2.42	0.99	0.80	0.79	1.25	15192	1896	6	0	0	0	0	logfile
✔	7UTN	26782	2024-09-24	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	23.53	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.54	0.0	0.03	23.21	0.00	2.517	6.76	0.58	1.3	98.7	0.0	1.02	0.28	0.82	0.85	4.11	8003	397	4	228	0	0	0	logfile
✔	8ATF	15647	2024-09-27	2022-08-23	3.45	3.54	3.42	3.5	0.013	1.99	4.0	0.11	25.04	0.03	2.090	4.15	1.81	3.1	96.2	0.7	-2.09	0.71	0.80	2.97	3.5	0.003	0.58	0.0	0.03	25.69	0.00	2.487	5.87	2.48	1.6	98.4	0.0	2.54	2.23	0.78	0.84	1.51	15719	1219	13	286	1	0	0	logfile

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