Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G09	29650	2024-09-28	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.66	0.0	0.23	7.86	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.007	0.86	0.0	0.04	7.24	0.00	1.656	0.55	0.00	10.1	89.9	0.0	0.43	0.70	0.81	0.82	—	19599	4860	26	0	10	0	0	logfile
✔	7UXU	26862	2024-09-25	2022-05-06	2.74	3.09	2.80	3.1	0.007	1.01	0.0	0.06	17.35	0.01	2.519	0.00	0.00	1.9	98.1	0.0	-0.46	0.58	0.88	5.36	3.0	0.003	0.56	0.0	0.04	17.33	0.00	2.547	0.57	0.41	2.1	97.9	0.0	0.80	1.30	0.54	0.86	4.02	8776	536	8	0	4	0	4268	logfile
✔	8Q8C	18250	2024-09-24	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.002	0.52	0.0	0.05	15.47	0.00	2.540	0.60	0.54	1.7	98.3	0.0	-0.98	1.22	0.39	0.89	7.72	6618	429	6	0	0	0	3372	logfile
✔	8DXR	27774	2024-09-25	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.48	0.0	0.04	2.98	0.00	2.602	0.60	0.00	5.1	94.8	0.1	1.93	0.41	0.67	0.70	—	10435	2101	7	0	0	0	0	logfile
✔	7KPW	22990	2024-09-23	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.002	0.67	0.0	0.04	4.82	0.00	2.474	0.66	0.00	9.6	89.8	0.6	0.64	2.03	0.82	0.81	—	4313	865	1	0	0	0	0	logfile
✔	8KF4	37198	2024-09-23	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.51	0.0	0.06	14.50	0.00	2.667	0.66	0.67	0.0	100.0	0.0	-1.07	1.20	0.39	0.91	7.60	1500	204	6	0	0	0	0	logfile
✔	8P34	17383	2024-09-23	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.005	0.64	0.0	0.05	13.81	0.00	2.682	0.69	1.23	4.3	95.7	0.0	-1.79	0.21	0.28	0.88	6.57	711	94	1	0	0	0	0	logfile
✔	7SC0	25007	2024-09-25	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.004	0.61	0.0	0.04	14.06	0.00	2.639	0.73	2.02	9.1	90.1	0.8	-0.76	1.49	0.67	0.82	2.18	11638	1419	11	0	0	0	0	logfile
✔	7JG7	22313	2024-09-28	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	3.4	0.006	1.07	0.0	0.00	6.56	0.01	2.402	0.76	0.00	12.7	87.2	0.1	-1.22	1.63	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	8EE7	28048	2024-09-28	2022-09-06	2.72	2.91	2.76	2.9	0.003	0.52	1.0	0.04	14.76	0.00	1.968	1.75	0.00	3.9	96.1	0.0	0.68	0.61	0.81	3.18	2.9	0.002	0.51	2.0	0.04	16.51	0.00	2.446	0.77	0.91	3.6	96.4	0.0	1.01	0.29	0.59	0.80	3.10	18094	1135	4	0	1	0	8906	logfile
✔	7SQV	25396	2024-09-23	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.46	0.0	0.04	16.27	0.00	2.607	0.79	1.46	1.1	98.9	0.0	1.77	1.99	0.77	0.90	3.57	4471	573	5	0	0	7	0	logfile
✔	8URE	42491	2024-09-24	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.8	0.004	0.53	0.0	0.03	4.26	0.00	2.616	0.83	0.00	3.0	97.0	0.0	0.95	0.65	0.81	0.82	—	8896	1792	8	0	0	0	0	logfile
✔	8Q27	18070	2024-09-24	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.003	0.57	0.0	0.05	15.75	0.00	2.561	0.86	0.25	3.9	96.1	0.0	-1.48	1.11	0.34	0.88	7.35	7002	453	6	0	0	0	3567	logfile
✔	6QPi	4614	2024-09-23	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.43	0.0	0.04	4.24	0.00	2.636	0.89	0.00	2.6	97.4	0.0	2.50	0.60	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	8GZ9	34393	2024-09-23	2022-09-26	2.62	2.44	2.40	2.4	0.003	0.69	0.0	0.06	14.01	0.00	2.670	1.93	0.00	0.3	99.7	0.0	-0.15	0.28	0.90	7.26	2.4	0.002	0.55	0.0	0.06	14.22	0.00	2.674	0.96	2.21	0.6	99.4	0.0	-0.31	0.27	0.28	0.91	8.15	2426	390	58	0	0	24	0	logfile
✔	8CGH	16643	2024-09-23	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.004	0.86	0.0	0.04	17.20	0.00	2.640	0.97	0.80	6.4	93.6	0.0	-4.90	0.93	0.53	0.93	6.66	2710	400	5	0	0	0	0	logfile
✔	8T15	40955	2024-09-30	2023-06-01	2.7	2.92	2.77	2.9	0.002	0.53	0.0	0.04	16.28	0.00	2.440	0.55	0.00	1.5	98.5	0.0	1.81	0.63	0.80	6.01	2.9	0.003	0.51	0.0	0.04	17.24	0.00	2.472	0.98	0.85	2.1	97.9	0.0	1.59	0.79	0.63	0.83	5.23	25656	1608	12	0	0	0	12612	logfile
✔	8oRG	17123	2024-09-23	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.004	0.61	0.0	0.05	16.55	0.00	2.396	1.01	2.63	1.6	98.4	0.0	-2.90	1.13	0.37	0.82	4.32	3966	258	3	0	0	0	2025	logfile
✔	7JG9	22315	2024-09-28	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.56	0.0	0.20	9.66	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.3	0.006	1.10	0.0	0.10	8.50	0.01	2.480	1.02	0.00	15.6	84.3	0.1	-1.84	1.32	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	8Q8Y	18265	2024-09-24	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.002	0.55	0.0	0.05	16.89	0.00	2.483	1.02	1.81	1.6	98.4	0.0	-1.49	1.19	0.35	0.88	5.36	6896	441	6	0	0	0	3521	logfile

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