Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WTV	37843	2024-09-23	2023-10-19	2.7	2.75	2.65	2.8	0.004	0.54	0.0	0.04	15.81	0.01	2.297	1.86	0.22	2.3	97.7	0.0	1.82	0.66	0.88	2.95	2.8	0.003	0.50	0.0	0.04	16.06	0.00	2.282	1.05	1.77	2.4	97.6	0.0	1.97	0.20	0.71	0.90	2.81	4325	536	2	0	6	3	0	logfile
✔	8CAN	16531	2024-09-28	2023-01-24	1.93	1.75	1.93	1.9	0.002	0.40	0.0	0.04	9.00	0.00	2.041	2.66	0.16	0.9	99.1	0.0	1.63	0.70	0.81	6.33	1.9	0.003	0.56	0.0	0.04	14.12	0.00	1.920	1.06	0.95	1.5	98.5	0.0	1.22	1.90	0.74	0.86	6.50	71225	4104	21	0	27	3170	33930	logfile
✔	8T18	40957	2024-09-30	2023-06-02	2.6	2.77	2.64	2.8	0.013	1.91	0.0	0.09	13.01	0.01	2.568	0.00	0.00	3.1	96.9	0.0	0.37	0.63	0.78	5.58	2.8	0.003	0.61	0.0	0.04	16.11	0.00	2.356	1.07	2.61	2.4	97.6	0.0	0.73	0.64	0.66	0.79	5.47	25356	1620	12	0	0	0	12420	logfile
✔	9FoR	50628	2024-09-23	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.003	0.86	0.0	0.04	15.96	0.00	2.632	1.08	1.59	6.4	93.6	0.0	-5.31	0.37	0.53	0.91	6.33	3405	490	10	0	0	0	0	logfile
✔	8ARi	15603	2024-09-27	2022-08-16	3.0	3.68	3.06	3.4	0.003	0.50	0.0	0.04	9.10	0.00	2.254	2.40	0.38	4.2	95.7	0.1	-0.94	0.89	0.88	4.79	3.4	0.003	0.49	0.0	0.04	11.10	0.00	2.587	1.10	0.50	3.6	96.4	0.0	0.33	0.95	0.87	0.91	3.55	63756	8160	58	0	24	0	0	logfile
✔	6iG9	9664	2024-09-27	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.002	0.65	0.0	0.04	4.74	0.00	2.556	1.11	0.00	7.6	92.4	0.0	1.58	1.57	0.84	0.79	—	17122	3386	1	0	0	0	0	logfile
✔	7VQQ	32092	2024-09-23	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.71	0.0	0.04	12.43	0.00	2.570	1.11	2.28	3.4	96.6	0.0	-4.84	0.32	0.47	0.87	4.80	1968	273	3	0	0	0	0	logfile
✔	7R4T	14316	2024-09-24	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.003	0.54	0.0	0.05	15.84	0.00	2.633	1.13	0.76	1.1	98.9	0.0	-1.54	1.59	0.42	0.89	5.95	7074	456	6	0	0	0	3606	logfile
✔	7NCA	12264	2024-09-25	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.003	0.54	0.0	0.05	13.26	0.00	2.554	1.15	1.36	4.4	95.6	0.0	-3.14	0.75	0.69	0.84	3.59	10428	732	12	0	0	0	5376	logfile
✔	8G17	29664	2024-09-25	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.67	0.0	0.05	15.97	0.01	2.415	1.20	1.14	3.0	97.0	0.0	0.45	1.21	0.72	0.87	6.83	10016	1336	4	0	0	0	0	logfile
✔	8G14	29661	2024-09-25	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.49	0.0	0.05	15.68	0.00	2.619	1.21	0.00	3.0	97.0	0.0	0.78	0.19	0.88	0.93	5.29	10020	1336	4	0	0	0	0	logfile
✔	8oH2	16876	2024-09-23	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.002	0.53	0.0	0.05	17.80	0.00	2.248	1.22	2.31	0.0	100.0	0.0	-2.06	0.53	0.49	0.88	5.88	3702	468	102	0	72	30	0	logfile
✔	8FMY	29300	2024-09-25	2022-12-26	2.66	3.65	2.84	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.034	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.003	0.59	0.0	0.04	14.13	0.00	2.646	1.24	0.46	3.4	96.6	0.0	0.97	1.10	0.83	0.83	3.58	9597	1260	3	0	0	0	0	logfile
✔	8GGP	40016	2024-09-23	2023-03-08	3.2	3.39	3.22	3.5	0.004	0.52	0.0	0.04	12.49	0.00	2.298	2.48	0.00	1.1	98.9	0.0	1.89	0.51	0.84	4.06	3.5	0.003	0.48	0.0	0.04	13.69	0.00	2.638	1.24	1.03	1.4	98.6	0.0	2.60	0.25	0.51	0.84	3.43	2075	280	2	0	1	0	0	logfile
✔	6L3U	0826	2024-09-28	2019-10-15	2.53	2.59	2.48	2.6	0.010	0.96	0.0	0.05	17.46	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.53	0.0	0.03	15.63	0.00	2.496	1.25	0.60	1.4	98.6	0.0	2.93	0.89	0.62	0.85	3.16	19698	1206	18	0	12	174	9588	logfile
✔	8V4Q	42975	2024-09-23	2023-11-29	2.71	2.89	2.72	2.9	0.003	0.53	0.0	0.05	13.53	0.00	2.201	1.68	0.48	1.7	98.3	0.0	0.26	0.55	0.85	3.48	2.9	0.002	0.48	0.0	0.04	16.96	0.00	2.492	1.26	2.09	1.6	98.4	0.0	0.72	0.35	0.56	0.88	3.07	5993	761	3	0	0	0	0	logfile
✔	8Q8D	18251	2024-09-24	2023-08-18	3.04	2.88	2.87	3.0	0.011	1.85	2.0	0.08	13.26	0.01	2.504	0.00	0.00	2.9	97.1	0.0	-1.65	0.32	0.75	5.97	3.0	0.003	0.54	0.0	0.05	15.95	0.00	2.460	1.27	1.52	1.6	98.4	0.0	-1.25	1.52	0.40	0.87	5.74	7074	456	6	0	0	0	3606	logfile
✔	8PT2	17866	2024-09-29	2023-07-13	2.59	2.37	2.57	2.6	0.002	0.45	0.0	0.04	17.64	0.00	1.885	2.40	1.37	3.6	96.4	0.0	1.25	0.74	0.88	4.57	2.6	0.003	0.50	0.0	0.04	17.60	0.00	2.347	1.27	1.37	3.8	96.2	0.0	1.15	0.27	0.74	0.89	4.59	22091	1355	8	27	3	1	10901	logfile
✔	6X64	22069	2024-09-27	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.20	0.0	0.05	5.38	0.00	2.405	1.28	0.00	0.0	0.0	0.0	—	1.70	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7UNL	26626	2024-09-26	2022-04-11	2.45	3.35	2.50	3.1	0.003	0.56	0.0	0.04	14.66	0.00	2.143	2.41	1.94	1.1	98.9	0.0	2.30	0.72	0.83	3.52	3.1	0.003	0.52	0.0	0.04	14.69	0.00	2.358	1.29	0.49	1.0	99.0	0.0	4.31	0.66	0.55	0.81	3.27	11724	734	6	0	8	120	5900	logfile

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