Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2024-09-29	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.60	0.0	0.04	14.88	0.00	2.244	1.45	1.82	1.8	98.2	0.0	4.83	0.41	0.69	0.81	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7oTo	13063	2024-09-25	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.72	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	1.3	0.003	0.64	0.0	0.04	17.42	0.00	1.959	7.33	1.94	1.9	98.0	0.1	1.51	0.71	0.80	0.78	1.71	10333	1313	4	0	4	0	0	logfile
✔	7N5D	24186	2024-09-28	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.004	0.65	0.0	0.04	16.06	0.00	2.418	6.16	2.78	1.9	98.1	0.0	2.91	0.64	0.82	0.83	2.99	20593	2612	14	0	7	0	0	logfile
✔	7T2G	25612	2024-09-24	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.003	0.60	0.0	0.04	14.81	0.00	2.464	9.56	1.57	1.9	98.1	0.0	0.45	0.40	0.80	0.81	4.45	6922	898	5	0	3	8	0	logfile
✔	8R5o	18935	2024-09-25	2023-11-17	2.49	2.13	—	1.4	0.002	0.45	0.0	0.04	11.77	0.00	2.042	4.11	0.44	2.7	97.2	0.0	0.35	0.83	0.86	5.83	1.4	0.003	0.54	0.0	0.04	15.13	0.00	1.962	4.39	1.08	2.9	97.0	0.0	1.27	0.39	0.84	0.87	5.27	54473	6680	41	0	3	255	0	logfile
✔	7RRP	24665	2024-09-28	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.003	0.57	0.0	0.04	14.38	0.00	2.069	1.76	0.91	2.4	97.6	0.0	4.27	0.07	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	8iKJ	35514	2024-09-23	2023-02-28	3.2	2.32	—	1.5	0.005	0.70	0.0	0.08	12.44	0.01	2.162	5.92	0.00	3.0	97.0	0.0	1.60	0.77	0.75	2.35	1.4	0.004	0.77	0.0	0.04	13.71	0.00	2.540	8.88	0.66	2.5	97.5	0.0	1.54	1.07	0.80	0.79	2.18	4200	532	2	0	3	0	0	logfile
✔	8XPS	38560	2024-09-23	2024-01-04	3.22	3.24	3.25	1.5	0.005	0.85	1.0	0.06	20.48	0.00	2.208	5.24	4.58	9.0	90.6	0.4	-4.49	0.90	0.82	3.01	1.4	0.004	0.89	0.0	0.05	15.44	0.00	2.478	8.91	2.29	8.7	91.3	0.0	-1.91	1.31	0.92	0.87	2.54	4568	546	7	0	24	0	0	logfile
✔	7UWJ	26833	2024-09-23	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.20	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.004	0.71	0.0	0.04	14.88	0.01	2.522	9.43	3.34	6.1	93.9	0.0	-2.25	0.46	0.68	0.65	1.93	5314	664	6	0	6	0	0	logfile
✔	8KFZ	37209	2024-09-24	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.003	0.66	0.0	0.04	16.23	0.00	2.483	11.64	4.25	2.5	97.5	0.0	0.79	0.33	0.72	0.72	1.37	8966	1139	5	0	0	0	0	logfile
✔	7UWN	26837	2024-09-25	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.39	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.004	0.65	0.0	0.04	16.57	0.00	2.493	9.96	4.34	5.3	94.7	0.0	-1.03	0.31	0.66	0.63	0.78	10602	1325	12	0	11	0	0	logfile
✔	7N5E	24187	2024-09-28	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.5	0.003	0.57	0.0	0.04	16.06	0.00	2.547	5.55	2.34	1.9	98.1	0.0	3.18	0.56	0.78	0.79	3.00	17915	2176	14	0	7	0	0	logfile
✔	8XPY	38563	2024-09-23	2024-01-04	3.63	3.53	3.62	1.6	0.004	0.79	0.0	0.05	29.42	0.00	2.217	10.44	4.39	10.1	89.9	0.0	-4.21	0.90	0.79	2.54	1.5	0.004	0.89	0.0	0.05	15.32	0.00	2.454	10.89	2.72	12.4	87.6	0.0	-2.28	2.13	0.91	0.83	2.01	4568	546	7	0	25	0	0	logfile
✔	8U65	41944	2024-09-24	2023-09-13	3.01	2.26	3.04	1.9	0.002	0.58	0.0	0.04	18.68	0.00	2.164	12.11	0.36	4.8	95.2	0.0	-0.65	0.71	0.67	1.30	1.5	0.005	1.08	2.0	0.05	18.99	0.01	1.988	14.94	4.59	5.2	94.8	0.0	-1.03	0.74	0.72	0.68	1.50	7636	967	4	0	2	0	0	logfile
✔	7MDW	23782	2024-09-23	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.56	0.0	0.04	14.70	0.00	2.383	9.52	2.25	9.1	90.9	0.0	-2.53	0.99	0.55	0.47	2.15	3392	435	4	0	1	0	0	logfile
✔	8VRW	43488	2024-09-25	2024-01-22	3.03	2.28	3.04	2.1	0.004	0.60	0.0	0.05	10.40	0.02	2.030	18.92	0.52	4.3	95.7	0.0	-1.34	0.67	0.64	2.23	1.5	0.003	0.66	0.0	0.04	13.86	0.01	2.384	11.75	2.52	4.1	95.9	0.0	-0.83	1.14	0.67	0.67	2.26	10413	1272	9	0	0	0	0	logfile
✔	8oR0	17114	2024-09-28	2023-04-12	3.1	2.37	2.99	1.7	0.004	0.64	1.0	0.04	15.61	0.00	1.149	6.33	0.51	3.9	96.1	0.0	0.59	0.64	0.56	0.20	1.5	0.003	0.71	0.0	0.04	16.63	0.00	2.062	10.28	2.41	4.2	95.8	0.0	0.06	1.27	0.69	0.64	0.70	18823	2489	8	0	3	0	0	logfile
✔	7UDS	26458	2024-09-27	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	17.29	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.004	0.70	0.0	0.05	15.34	0.00	2.500	9.13	2.17	4.6	95.4	0.0	-0.19	1.13	0.75	0.73	2.35	17032	2094	32	0	53	0	0	logfile
✔	7XJG	33226	2024-09-26	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	24.50	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.60	0.0	0.04	23.93	0.00	2.482	5.56	3.55	3.7	96.3	0.0	0.51	0.89	0.79	0.80	2.56	13167	1066	12	216	2	0	0	logfile
✔	8D33	27154	2024-09-27	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.19	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.003	0.64	0.0	0.04	18.15	0.00	2.312	6.35	3.04	3.2	96.8	0.0	1.11	1.33	0.73	0.79	2.84	15272	1784	6	46	2	0	0	logfile

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