Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P2S	17373	2024-09-25	2023-05-16	2.4	2.06	2.43	1.8	0.003	0.54	0.0	0.04	12.82	0.00	2.120	8.76	3.01	4.7	95.2	0.1	0.29	0.79	0.75	4.06	1.8	0.004	0.68	0.0	0.05	16.47	0.00	1.996	10.22	1.65	6.0	93.9	0.1	0.26	0.54	0.80	0.79	3.74	9694	1201	4	0	6	0	0	logfile
✔	8SZi	40917	2024-09-28	2023-05-29	3.5	2.34	—	1.9	0.008	0.97	2.0	0.12	13.69	0.01	1.971	4.45	0.05	2.7	97.3	0.0	0.27	0.78	0.78	2.50	1.8	0.002	0.54	0.0	0.04	14.99	0.00	2.319	3.54	1.07	2.8	97.2	0.0	0.87	0.57	0.79	0.78	2.16	17868	2249	10	0	18	0	0	logfile
✔	7C7S	30301	2024-09-25	2020-05-26	2.9	2.38	—	1.8	0.006	0.78	0.0	0.05	13.96	0.01	2.153	7.86	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.004	0.73	0.0	0.05	15.10	0.00	2.416	7.13	2.37	3.5	96.5	0.0	0.31	0.59	0.85	0.83	2.62	10915	1355	4	0	9	0	0	logfile
✔	8F8P	28932	2024-09-27	2022-11-22	2.26	2.19	2.27	1.9	0.004	0.83	0.0	0.05	17.73	0.01	2.301	2.96	2.04	2.7	97.3	0.0	-1.31	0.72	0.85	2.89	1.8	0.004	0.84	1.0	0.05	17.00	0.00	2.005	5.16	2.36	3.0	97.0	0.0	0.83	1.16	0.73	0.87	3.30	14640	1855	10	0	10	0	0	logfile
✔	8SZH	40916	2024-09-28	2023-05-29	3.1	2.21	—	1.8	0.006	0.78	2.0	0.11	14.62	0.01	2.196	4.04	0.00	3.8	96.2	0.0	-0.33	0.82	0.82	2.95	1.8	0.003	0.53	0.0	0.04	15.75	0.00	2.452	2.75	1.66	3.7	96.3	0.0	0.03	0.35	0.83	0.84	2.47	18062	2267	10	0	24	1	0	logfile
✔	7RPo	24618	2024-09-25	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.98	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.003	0.74	0.0	0.04	18.35	0.00	2.022	9.33	0.00	9.1	90.9	0.0	-2.14	2.27	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	8WQW	37756	2024-09-27	2023-10-12	3.27	2.51	3.28	1.9	0.005	0.70	0.0	0.05	13.42	0.01	2.125	9.31	0.10	5.2	94.8	0.0	-0.92	0.71	0.67	2.47	1.8	0.004	0.72	0.0	0.05	15.52	0.01	2.587	9.42	2.73	6.5	93.5	0.0	-0.96	1.03	0.74	0.72	2.12	8972	1174	8	0	5	0	0	logfile
✔	8WMH	37652	2024-09-26	2023-10-03	2.6	2.23	2.67	1.8	0.003	0.54	0.0	0.04	19.42	0.00	2.196	9.02	0.36	4.1	95.9	0.0	-0.02	0.60	0.62	2.31	1.8	0.004	0.59	0.0	0.04	20.27	0.00	2.512	7.27	1.81	4.5	95.5	0.0	-0.18	0.66	0.73	0.74	2.32	12942	1198	4	141	0	0	0	logfile
✔	8F8Q	28933	2024-09-29	2022-11-22	2.79	2.16	2.84	1.8	0.004	0.69	0.0	0.05	14.38	0.01	2.072	3.55	3.93	3.1	96.9	0.0	-0.96	0.80	0.83	3.55	1.8	0.006	0.72	0.0	0.05	16.97	0.01	1.854	6.64	3.25	4.2	95.8	0.0	0.36	1.14	0.80	0.84	3.13	22006	2778	14	0	12	0	0	logfile
✔	8G1i	29671	2024-09-26	2023-02-02	3.12	2.20	3.26	2.0	0.003	0.64	0.0	0.04	21.47	0.01	1.975	7.71	1.72	6.5	93.5	0.0	-1.85	0.75	0.77	2.21	1.8	0.002	0.55	0.0	0.04	21.19	0.00	2.500	4.01	2.84	4.8	95.2	0.0	-0.53	1.14	0.75	0.79	2.00	13613	1298	4	142	0	0	0	logfile
✔	7M3G	23654	2024-09-26	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	0.0	0.06	17.28	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.60	0.0	0.04	17.04	0.00	2.302	3.13	2.72	3.7	96.3	0.0	0.14	0.34	0.85	0.87	3.49	13298	1627	11	0	41	0	0	logfile
✔	8DZQ	27805	2024-09-24	2022-08-08	2.82	2.18	2.79	2.1	0.004	0.75	0.0	0.05	13.13	0.00	2.244	6.40	0.23	6.2	93.8	0.0	-0.46	0.74	0.71	3.49	1.8	0.002	0.60	0.0	0.04	15.47	0.00	2.308	7.13	1.83	5.4	94.6	0.0	0.25	0.32	0.75	0.74	3.03	8342	1100	6	0	1	0	0	logfile
✔	7XA3	33086	2024-09-25	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.62	0.0	0.04	14.02	0.00	2.522	7.37	3.23	3.1	96.9	0.0	1.60	0.58	0.78	0.78	2.92	9591	1220	6	0	0	0	0	logfile
✔	7Y5S	33623	2024-09-25	2022-06-17	3.0	2.29	2.98	2.9	0.003	0.63	0.0	0.05	12.39	0.01	2.185	9.34	0.00	7.0	93.0	0.0	-2.10	0.75	0.70	2.12	1.8	0.005	0.77	0.0	0.05	15.72	0.01	2.341	12.59	2.48	8.9	91.1	0.0	-2.35	1.33	0.79	0.79	3.48	11535	1515	3	0	0	0	0	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✔	7XW9	33494	2024-09-24	2022-05-26	2.7	2.10	2.82	1.8	0.005	0.68	0.0	0.05	12.26	0.01	2.167	6.26	0.00	3.5	96.5	0.0	0.37	0.78	0.77	3.77	1.8	0.004	0.63	0.0	0.04	15.43	0.00	2.531	5.75	2.45	3.5	96.5	0.0	1.11	1.49	0.80	0.80	3.42	8988	1143	7	0	1	0	0	logfile
✔	7WiG	32529	2024-09-24	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.58	0.0	0.04	15.29	0.00	2.518	4.61	1.43	2.0	98.0	0.0	1.47	0.34	0.79	0.80	3.27	8931	1139	6	0	1	0	0	logfile
✔	8P79	17522	2024-09-23	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.003	0.62	0.0	0.04	15.87	0.00	2.581	4.72	0.36	1.3	98.5	0.2	1.92	1.15	0.68	0.77	6.37	5256	630	6	0	1	180	0	logfile
✔	7E9G	31031	2024-09-29	2021-03-04	3.5	2.34	—	3.1	0.004	0.59	0.0	0.10	12.02	0.00	2.196	9.69	0.00	3.8	96.2	0.0	-3.17	0.70	0.67	1.96	1.8	0.003	0.63	0.0	0.04	14.69	0.00	2.480	10.57	3.65	5.3	94.7	0.0	-1.16	0.60	0.72	0.70	1.94	18816	2557	10	0	3	0	0	logfile
✔	7SQG	25384	2024-09-24	2021-11-05	2.6	2.14	—	1.9	0.004	0.60	0.0	0.05	17.27	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.005	0.60	0.0	0.04	16.73	0.00	2.554	5.95	1.59	3.9	96.1	0.0	1.56	1.25	0.81	0.83	3.41	6630	810	6	0	12	0	0	logfile

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