Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DXR	27774	2024-09-25	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.48	0.0	0.04	2.98	0.00	2.602	0.60	0.00	5.1	94.8	0.1	1.93	0.41	0.67	0.70	—	10435	2101	7	0	0	0	0	logfile
✔	6VQi	21351	2024-09-23	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.003	0.57	0.0	0.03	4.11	0.00	2.609	2.87	0.00	6.1	93.8	0.1	2.62	0.77	0.56	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	8PS8	17846	2024-09-28	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.63	0.0	0.04	4.23	0.00	2.532	1.62	0.00	6.9	93.1	0.0	0.14	0.65	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	6QPi	4614	2024-09-23	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.43	0.0	0.04	4.24	0.00	2.636	0.89	0.00	2.6	97.4	0.0	2.50	0.60	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	8URE	42491	2024-09-24	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.8	0.004	0.53	0.0	0.03	4.26	0.00	2.616	0.83	0.00	3.0	97.0	0.0	0.95	0.65	0.81	0.82	—	8896	1792	8	0	0	0	0	logfile
✔	8FKJ	29250	2024-09-30	2022-12-21	4.2	4.36	4.26	4.0	0.003	0.66	0.0	0.04	5.09	0.00	2.167	6.77	0.00	9.9	89.9	0.1	-0.50	0.66	0.65	—	4.1	0.002	0.55	0.0	0.04	4.28	0.00	2.407	2.87	0.00	9.0	90.9	0.1	-0.16	0.45	0.66	0.67	—	25001	5088	27	0	0	0	0	logfile
✔	6VAB	21135	2024-09-23	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.002	0.63	0.0	0.04	4.29	0.00	2.555	1.33	0.00	4.4	95.6	0.0	0.08	1.87	0.72	0.67	—	4642	938	4	0	0	0	0	logfile
✔	6SH4	10193	2024-09-26	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.70	0.0	0.04	4.38	0.00	2.612	0.37	0.00	7.8	92.2	0.0	0.03	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	8oSH	17153	2024-09-24	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.63	0.0	0.04	4.47	0.00	2.431	3.78	0.00	14.2	85.8	0.0	-0.91	0.54	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	6SH5	10194	2024-09-26	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.003	0.76	0.0	0.04	4.58	0.00	2.594	2.53	0.00	9.0	91.0	0.0	-2.95	1.62	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile
✔	6oLK	20115	2024-09-28	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.003	0.67	0.0	0.04	4.61	0.00	2.596	2.69	0.00	7.2	92.8	0.0	-0.30	1.33	0.61	0.57	—	10323	2094	6	0	0	0	0	logfile
✔	8FTK	29439	2024-09-24	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.002	0.54	0.0	0.04	4.64	0.00	2.329	1.93	0.00	8.3	91.7	0.0	0.47	1.25	0.86	0.82	—	7840	1584	1	0	0	0	0	logfile
✔	6U68	20662	2024-09-25	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.4	0.003	0.76	0.0	0.05	4.67	0.00	2.472	2.82	0.00	7.2	92.8	0.0	-1.02	1.81	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	8UTM	42542	2024-09-26	2023-10-31	4.32	3.34	4.34	2.2	0.009	1.55	9.0	0.09	7.59	0.01	2.603	0.05	0.00	2.7	97.3	0.0	-1.95	0.75	0.74	—	2.2	0.005	0.66	0.0	0.04	4.71	0.00	2.360	1.52	0.00	4.9	95.1	0.0	0.72	1.81	0.79	0.77	—	14176	2856	8	0	0	0	0	logfile
✔	6CoZ	7545	2024-09-23	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.75	0.0	0.04	4.73	0.00	2.618	2.65	0.00	5.8	94.2	0.0	-0.93	1.54	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	6iG9	9664	2024-09-27	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.002	0.65	0.0	0.04	4.74	0.00	2.556	1.11	0.00	7.6	92.4	0.0	1.58	1.57	0.84	0.79	—	17122	3386	1	0	0	0	0	logfile
✔	8CGL	16647	2024-09-30	2023-02-05	4.1	6.82	4.33	4.1	0.008	1.07	4.0	0.07	5.62	0.01	2.267	9.85	4.00	7.0	92.8	0.2	-0.82	0.83	0.66	—	4.2	0.004	0.72	0.0	0.05	4.76	0.00	2.395	4.90	0.00	9.2	90.8	0.0	-0.62	1.41	0.90	0.82	—	16732	2212	4	0	0	0	5572	logfile
✔	7N9Y	24264	2024-09-24	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7KPW	22990	2024-09-23	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.002	0.67	0.0	0.04	4.82	0.00	2.474	0.66	0.00	9.6	89.8	0.6	0.64	2.03	0.82	0.81	—	4313	865	1	0	0	0	0	logfile
✔	8G6K	29772	2024-09-25	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.004	0.67	0.0	0.04	4.84	0.00	2.432	1.62	0.00	6.9	93.1	0.0	-0.52	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile

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