Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5TTP	8467	2024-09-23	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.003	0.78	0.0	0.04	4.95	0.00	2.570	3.04	0.00	14.2	85.6	0.2	0.39	1.76	0.67	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	7N95	24250	2024-09-24	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	8i6Q	35203	2024-09-23	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	4.2	0.004	0.66	0.0	0.04	5.02	0.00	2.419	6.00	0.00	9.1	90.8	0.1	-0.66	0.42	0.68	0.82	—	3975	810	4	0	0	0	0	logfile
✔	8SRM	40735	2024-09-23	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.006	0.60	0.0	0.04	5.02	0.00	2.434	1.56	0.00	6.0	94.0	0.0	0.75	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	7N9Q	24259	2024-09-24	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	5VCA	8659	2024-09-27	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.003	0.67	0.0	0.04	5.07	0.00	2.223	2.32	0.00	12.2	87.8	0.0	-0.77	2.90	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile
✔	8DXQ	27773	2024-09-25	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.003	0.60	0.0	0.04	5.08	0.00	2.517	0.20	0.00	10.4	89.6	0.0	0.07	0.31	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	7TKH	25969	2024-09-28	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.004	0.80	0.0	0.00	5.09	0.00	2.458	2.54	0.00	9.2	90.6	0.2	0.67	1.64	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7TKM	25974	2024-09-28	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.003	0.78	0.0	0.00	5.11	0.00	2.272	2.00	0.00	7.9	91.8	0.3	0.14	1.51	0.82	0.82	—	20227	5056	27	0	0	0	0	logfile
✔	7TK0	25948	2024-09-28	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.005	0.85	0.0	0.00	5.25	0.00	2.390	1.89	0.00	9.6	90.1	0.3	-0.13	0.79	0.78	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	8TAU	41142	2024-09-25	2023-06-27	3.5	3.03	3.36	1.8	0.006	0.79	0.0	0.00	7.52	0.01	2.188	4.55	0.00	2.1	97.9	0.0	-2.34	0.73	0.66	—	2.2	0.005	0.79	0.0	0.00	5.28	0.00	1.985	7.43	0.00	15.9	84.0	0.0	-2.66	0.72	0.78	0.74	—	54106	9002	25	0	4	0	18087	logfile
✔	8TAR	41140	2024-09-25	2023-06-27	4.0	3.08	3.83	2.0	0.005	0.76	0.0	0.06	7.03	0.00	2.106	1.76	0.00	1.8	98.2	0.0	-1.85	0.74	0.68	—	2.6	0.005	0.79	0.0	0.04	5.33	0.00	2.041	7.07	0.00	14.9	85.1	0.0	-2.51	1.29	0.79	0.76	—	54010	8984	24	0	4	0	18053	logfile
✔	6X64	22069	2024-09-27	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.20	0.0	0.05	5.38	0.00	2.405	1.28	0.00	0.0	0.0	0.0	—	1.70	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7TKP	25977	2024-09-28	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.82	0.0	0.00	5.42	0.00	2.394	2.43	0.00	8.7	91.1	0.2	0.06	0.78	0.79	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	6RLB	4918	2024-09-28	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.003	0.73	0.0	0.04	5.43	0.00	2.393	2.28	0.00	10.7	89.3	0.0	-1.04	1.87	0.86	0.65	—	20407	4122	14	0	0	0	0	logfile
✔	7TJY	25946	2024-09-28	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.5	0.006	0.90	0.0	0.00	5.46	0.00	2.448	1.35	0.00	10.8	89.0	0.3	0.00	1.47	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile
✔	6ZD0	11172	2024-09-24	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.77	0.0	0.04	5.49	0.00	2.602	5.29	0.00	15.7	84.1	0.2	-4.88	2.52	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	7DZY	30921	2024-09-28	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.89	0.0	0.00	5.59	0.00	2.061	1.34	0.00	12.1	87.8	0.1	-3.07	2.19	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	8UP1	42442	2024-09-24	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.005	0.81	0.0	0.04	5.64	0.00	2.032	5.91	0.00	8.1	91.9	0.0	1.79	2.25	0.81	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	8SLE	40577	2024-09-28	2023-04-21	4.3	4.73	4.56	4.2	0.005	0.90	0.0	0.05	5.48	0.00	1.914	8.93	0.00	6.1	93.9	0.0	-1.98	0.62	0.61	—	4.2	0.005	0.72	0.0	0.04	5.77	0.00	2.437	3.38	0.00	9.0	91.0	0.0	-1.03	1.44	0.62	0.68	—	17388	3468	4	0	0	0	0	logfile

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