Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X34	32978	2024-09-23	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.3	0.005	0.81	0.0	0.04	25.40	0.00	2.071	30.52	2.60	4.1	95.9	0.0	-0.30	0.66	0.21	0.78	-0.93	2762	100	2	94	0	0	0	logfile
✔	8PXB	18002	2024-09-24	2023-07-23	3.6	4.63	3.71	4.2	0.002	0.45	0.0	0.04	9.09	0.00	2.259	7.28	0.46	3.6	96.4	0.0	2.65	0.54	0.61	-0.50	4.2	0.004	0.98	0.0	0.05	14.11	0.00	2.405	18.57	1.74	6.1	93.9	0.0	0.37	1.46	0.55	0.73	-0.89	8102	1018	2	0	0	0	0	logfile
✔	8YMK	39396	2024-09-23	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✔	7TTS	26122	2024-09-28	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.67	0.0	0.04	14.03	0.00	1.769	16.72	0.12	3.4	96.5	0.1	2.42	1.03	0.69	0.41	-0.43	18793	2686	12	0	23	0	0	logfile
✔	7Y5G	33619	2024-09-23	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.50	0.0	0.04	15.10	0.00	2.071	4.17	2.64	0.7	99.3	0.0	1.55	0.64	0.65	0.75	-0.42	4736	604	4	0	6	0	0	logfile
✔	8JTT	36652	2024-09-23	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	4.4	0.003	0.68	0.0	0.04	15.58	0.00	2.623	8.28	2.46	4.0	96.0	0.0	0.21	1.16	0.52	0.60	-0.31	3321	454	2	0	1	0	0	logfile
✔	7LC9	23270	2024-09-23	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.003	0.67	0.0	0.05	17.24	0.00	2.562	21.16	7.96	10.4	89.6	0.0	-3.72	1.07	0.69	0.78	-0.31	3497	525	12	0	0	0	0	logfile
✔	8iZZ	35878	2024-09-23	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.52	1.0	0.14	26.99	0.01	2.261	37.55	25.00	54.5	42.4	3.0	-6.96	3.53	0.30	0.53	-0.29	1342	198	22	0	0	0	0	logfile
✘	8B3Q	15833	2024-09-30	2022-09-16	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.09	—	—	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	6.42	—	—	—	-0.26	25095	3395	75	0	0	0	0	logfile
✔	7R4R	14315	2024-09-24	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.32	18.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.005	1.43	17.0	0.24	16.32	0.00	1.805	22.48	5.22	8.9	91.1	0.1	-2.49	1.29	0.67	0.59	-0.26	50505	3293	12	0	43	0	24171	logfile
✔	7UiC	26543	2024-09-27	2022-03-29	3.7	6.93	3.66	3.1	0.002	0.51	0.0	0.04	13.62	0.00	2.212	9.81	0.00	1.0	99.0	0.0	0.41	0.74	0.59	0.28	3.0	0.002	0.68	0.0	0.04	15.10	0.00	2.464	10.59	1.01	2.4	97.6	0.0	0.69	0.61	0.81	0.72	-0.26	17303	2138	6	0	0	0	0	logfile
✔	8ERL	28554	2024-09-24	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.79	0.0	0.05	15.79	0.00	2.578	17.65	3.43	8.4	91.6	0.0	-2.38	1.03	0.87	0.79	-0.22	6600	830	2	0	0	0	0	logfile
✔	8E55	27903	2024-09-26	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.62	0.0	0.03	16.54	0.00	2.356	9.84	1.34	1.7	98.3	0.0	4.21	1.46	0.69	0.71	-0.11	12176	780	4	0	0	0	6104	logfile
✔	8AZS	15770	2024-09-24	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.2	0.028	4.05	31.0	0.17	24.42	0.02	2.053	345.81	15.67	48.7	44.4	6.9	-8.17	17.49	0.18	0.16	-0.10	9036	1224	36	0	0	0	0	logfile
✔	7YR7	34048	2024-09-23	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	25.59	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.006	0.95	0.0	0.05	25.50	0.01	2.085	21.95	4.01	22.0	78.0	0.0	-3.37	1.70	0.67	0.66	-0.09	5102	330	7	118	0	0	0	logfile
✔	8A1R	15084	2024-09-25	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.004	0.73	1.0	0.05	16.24	0.00	2.545	18.40	1.63	6.6	93.4	0.0	-0.38	0.60	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7N8N	24238	2024-09-25	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	27.93	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.004	0.77	0.0	0.04	28.55	0.01	2.408	16.54	2.01	4.8	94.9	0.3	-0.77	1.28	0.87	0.79	-0.05	11121	798	6	250	0	0	0	logfile
✔	7Q4W	13819	2024-09-28	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.004	0.74	0.0	0.05	15.57	0.00	2.244	15.27	1.91	4.1	95.9	0.0	-0.05	0.67	0.92	0.84	-0.03	18050	2364	12	0	22	0	0	logfile
✔	8BH6	16048	2024-09-24	2022-10-30	3.7	4.20	3.87	3.9	0.004	0.72	2.0	0.04	22.90	0.01	2.148	23.15	1.06	6.5	93.3	0.1	-3.22	0.82	0.66	0.41	3.6	0.005	0.76	0.0	0.04	23.07	0.01	2.028	24.71	3.24	9.8	90.2	0.0	-2.61	2.06	0.84	0.73	-0.03	51548	2311	20	1547	0	0	0	logfile
✔	7T3L	25662	2024-09-24	2021-12-08	3.6	8.29	—	3.5	0.004	0.74	0.0	0.05	18.09	0.01	2.223	7.57	0.52	5.0	95.0	0.0	-1.92	0.73	0.45	-0.03	3.4	0.002	0.61	0.0	0.04	18.34	0.00	2.448	14.47	0.95	5.1	94.9	0.0	0.23	1.17	0.94	0.84	-0.02	52219	6242	28	200	0	0	0	logfile

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