Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZGQ	14711	2024-09-26	2022-04-04	2.8	2.47	2.69	2.8	0.003	0.55	0.0	0.04	16.53	0.00	2.162	11.35	3.25	6.7	93.3	0.0	-1.11	0.77	0.85	3.25	2.8	0.003	0.60	0.0	0.05	16.88	0.00	2.564	9.54	3.31	6.8	93.2	0.0	-1.29	0.30	0.77	0.85	3.58	13704	1749	4	0	0	0	0	logfile
✔	8EBY	28002	2024-09-29	2022-08-31	3.6	2.60	3.53	2.1	0.002	0.47	0.0	0.04	11.97	0.00	2.142	8.09	2.23	4.3	95.6	0.0	0.93	0.71	0.72	1.81	2.1	0.005	0.92	2.0	0.05	16.83	0.00	2.187	12.35	4.26	5.0	94.9	0.0	0.05	1.40	0.74	0.73	1.45	23709	2834	15	45	7	0	0	logfile
✔	8HAi	34591	2024-09-27	2022-10-26	4.7	4.54	4.59	4.0	0.003	0.58	0.0	0.03	24.52	0.00	2.249	10.79	0.00	1.5	98.5	0.0	1.74	0.83	0.72	—	4.0	0.004	0.66	0.0	0.04	26.20	0.00	2.246	15.30	0.09	2.6	97.4	0.0	1.43	1.68	0.86	0.80	—	16547	1310	11	294	0	0	0	logfile
✔	6KQo	0754	2024-09-27	2019-08-18	2.52	3.75	—	3.2	0.019	1.16	0.0	0.07	16.22	0.00	1.883	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	3.3	0.005	0.79	1.0	0.13	14.84	0.00	1.788	5.90	1.15	4.4	95.6	0.0	-0.44	1.66	0.85	0.84	3.31	63373	3936	24	0	48	0	31225	logfile
✔	7K0o	22605	2024-09-28	2020-09-04	3.1	3.53	—	3.5	0.006	0.75	0.0	0.05	13.03	0.00	2.161	5.84	0.21	2.6	97.4	0.0	0.95	0.70	0.82	3.00	3.5	0.004	0.57	0.0	0.04	14.74	0.00	2.320	4.39	1.45	1.8	98.2	0.0	1.18	1.05	0.71	0.84	2.68	18558	2342	14	0	14	0	0	logfile
✔	6oLP	20118	2024-09-28	2019-04-16	4.2	4.36	4.20	4.2	0.009	1.13	0.0	0.07	15.44	0.01	2.224	7.16	0.57	11.7	88.3	0.0	-4.54	0.74	0.81	—	4.2	0.004	0.76	0.0	0.05	11.93	0.00	2.422	10.89	0.10	8.9	91.1	0.0	-2.44	0.71	0.74	0.82	—	18868	2182	40	0	126	0	0	logfile
✔	7UZW	26920	2024-09-27	2022-05-09	3.55	4.43	3.43	3.7	0.006	0.77	0.0	0.05	14.77	0.00	1.945	10.42	0.06	6.8	93.2	0.1	-0.88	0.84	0.75	1.73	3.7	0.004	0.70	0.0	0.04	16.89	0.00	2.422	10.22	1.81	5.0	95.0	0.0	0.23	1.49	0.90	0.85	1.54	14754	1760	8	31	0	0	0	logfile
✔	7AFA	11758	2024-09-28	2020-09-19	2.95	3.82	2.97	2.9	0.007	0.81	6.0	0.05	21.50	0.00	1.456	11.42	0.00	2.9	97.1	0.0	-1.10	0.86	0.88	1.92	2.9	0.005	0.77	0.0	0.04	21.62	0.00	1.879	15.06	2.29	3.9	96.1	0.0	-0.01	1.27	0.87	0.91	1.75	18482	1101	11	456	26	0	0	logfile
✔	8B3J	15830	2024-09-23	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.003	0.60	0.0	0.04	16.35	0.00	2.448	4.30	3.24	5.6	94.4	0.0	-2.13	0.26	0.43	0.87	2.66	5688	718	3	0	0	0	0	logfile
✔	7PXA	13695	2024-09-23	2021-10-08	2.8	2.56	—	2.8	0.002	0.42	0.0	0.04	9.39	0.00	2.147	3.67	1.14	1.5	98.5	0.0	2.60	0.76	0.84	2.86	2.8	0.003	0.55	0.0	0.04	15.18	0.00	2.368	4.38	1.85	1.7	98.3	0.0	2.49	1.44	0.77	0.87	2.62	46614	6187	35	0	0	0	0	logfile
✔	7CGB	30354	2024-09-27	2020-07-01	3.4	4.20	—	3.8	0.004	0.79	21.0	0.05	13.10	0.00	2.035	15.80	1.60	5.2	94.6	0.1	-1.64	0.59	0.80	1.16	3.8	0.004	0.82	3.0	0.04	15.02	0.00	1.661	14.64	3.00	7.3	92.7	0.0	-1.47	0.51	0.60	0.81	1.12	64834	8822	22	0	0	0	0	logfile
✔	7SQH	25385	2024-09-24	2021-11-05	2.5	2.77	—	3.0	0.006	0.74	0.0	0.05	19.41	0.00	2.257	3.85	0.00	2.4	97.6	0.0	1.93	0.85	0.83	3.23	3.0	0.004	0.65	0.0	0.05	17.07	0.00	2.605	4.72	2.21	3.2	96.8	0.0	1.80	0.63	0.87	0.87	3.12	6954	849	9	0	12	21	0	logfile
✔	7ZGP	14710	2024-09-26	2022-04-04	2.7	2.79	2.57	2.8	0.003	0.58	0.0	0.05	14.56	0.00	2.175	10.35	0.96	6.3	93.5	0.2	-0.84	0.79	0.91	5.10	2.8	0.004	0.80	1.0	0.05	15.52	0.00	2.312	7.99	1.99	6.3	93.6	0.1	-1.13	0.23	0.80	0.91	4.68	14055	1767	6	4	2	0	0	logfile
✔	7PT7	13620	2024-09-28	2021-09-26	3.8	3.34	—	3.4	0.007	0.74	4.0	0.05	14.97	0.00	1.865	11.56	0.64	3.3	96.7	0.0	0.56	0.76	0.80	1.56	3.4	0.003	0.57	0.0	0.04	16.00	0.00	1.085	8.29	1.33	2.8	97.2	0.0	0.84	0.31	0.77	0.82	1.32	67420	8451	29	0	50	0	0	logfile
✔	8JXE	36698	2024-09-30	2023-06-30	3.2	3.02	3.09	3.1	0.004	0.73	0.0	0.05	15.76	0.01	2.059	5.32	1.88	4.6	95.3	0.1	-0.89	0.77	0.86	3.50	3.1	0.004	0.78	1.0	0.05	14.76	0.00	2.019	5.68	3.60	4.9	95.1	0.0	-0.97	0.29	0.77	0.87	2.97	23977	2947	32	0	102	0	0	logfile
✔	7LKZ	23410	2024-09-27	2021-02-03	3.27	3.84	—	3.7	0.007	1.08	0.0	0.06	19.43	0.01	1.892	12.38	0.37	8.3	91.7	0.0	-1.26	0.74	0.83	1.92	3.7	0.003	0.80	0.0	0.04	17.39	0.00	1.988	6.45	2.44	5.8	94.2	0.0	0.05	1.10	0.74	0.84	1.37	15515	1920	4	0	26	0	0	logfile
✔	7SC8	25029	2024-09-25	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	14.65	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.67	2.0	0.04	16.07	0.00	1.926	7.46	1.31	1.0	98.9	0.1	3.06	0.38	0.86	0.86	3.86	56784	6836	116	0	54	2672	0	logfile
✔	7TQD	26066	2024-09-25	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	12.10	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.002	0.58	0.0	0.04	14.93	0.00	1.083	3.73	0.77	1.9	98.1	0.0	1.20	2.47	0.80	0.83	3.95	8690	1096	4	0	5	0	0	logfile
✔	7QCN	13897	2024-09-24	2021-11-24	3.4	3.87	—	3.6	0.008	1.47	4.0	0.10	18.42	0.02	2.107	15.06	14.67	8.8	91.0	0.3	-1.90	0.80	0.72	2.34	3.6	0.004	0.72	0.0	0.05	15.23	0.00	2.297	4.91	2.56	7.3	92.7	0.0	-0.70	1.12	0.88	0.87	3.11	6416	814	6	0	18	0	0	logfile
✔	7T75	25734	2024-09-28	2021-12-14	2.7	2.93	2.74	3.0	0.022	1.83	12.0	0.14	11.79	0.01	2.271	1.14	0.90	2.5	96.7	0.8	0.58	0.76	0.83	4.56	2.9	0.003	0.62	0.0	0.04	13.96	0.00	2.493	4.65	1.89	3.4	96.5	0.0	0.61	0.63	0.71	0.82	4.21	19227	2316	36	0	87	0	0	logfile

• ← previous
• Page 3 of 539
• next →