Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YG8	33811	2024-09-24	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.007	0.69	0.0	0.04	24.59	0.00	1.821	17.34	0.00	0.0	0.0	0.0	—	0.40	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	7XD3	33134	2024-09-24	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	24.05	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.77	0.0	0.04	24.20	0.01	1.697	13.89	0.00	0.0	0.0	0.0	—	1.82	0.87	0.82	—	9062	0	2	423	28	0	0	logfile
✔	7YCG	33738	2024-09-24	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.68	0.0	0.04	24.51	0.00	1.848	29.82	0.00	0.0	0.0	0.0	—	0.32	0.95	0.88	—	8661	0	3	404	4	0	0	logfile
✔	7YGD	33816	2024-09-24	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.78	0.0	0.04	25.43	0.01	1.825	28.90	0.00	0.0	0.0	0.0	—	2.07	0.91	0.89	—	8313	0	4	389	6	0	0	logfile
✔	7XD7	33138	2024-09-24	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	23.14	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.005	0.65	0.0	0.04	23.23	0.00	1.917	6.97	0.00	0.0	0.0	0.0	—	2.01	0.92	0.92	—	8693	0	2	405	30	0	0	logfile
✔	6PoM	20416	2024-09-23	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	4.9	0.010	1.26	0.0	0.06	27.15	0.01	1.943	51.03	0.00	0.0	0.0	0.0	—	1.76	0.74	0.79	—	4937	0	2	230	0	0	0	logfile
✔	8PPo	17806	2024-09-23	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile
✔	7PTL	13630	2024-09-29	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	23.55	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	27.87	0.01	1.723	77.38	0.00	0.0	0.0	0.0	—	3.53	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7UVT	26816	2024-09-26	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.87	0.01	2.091	16.76	0.00	0.0	0.0	0.0	—	0.48	0.78	0.78	—	12409	0	1	386	0	0	4149	logfile
✔	8iXJ	35793	2024-09-26	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.002	0.32	0.0	0.03	13.78	0.00	2.396	2.00	0.74	0.0	100.0	0.0	7.19	1.02	0.65	0.85	0.95	13760	1840	40	0	0	0	0	logfile
✔	6o1o	0454	2024-09-27	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	18.29	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	16.94	0.00	2.206	9.94	0.00	0.0	0.0	0.0	—	1.31	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	8HD7	34671	2024-09-24	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.006	0.74	0.0	0.04	23.90	0.01	1.822	12.81	0.00	0.0	0.0	0.0	—	1.70	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	6WL1	21815	2024-09-26	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.52	0.0	0.04	16.38	0.00	2.657	4.46	4.88	0.0	100.0	0.0	6.13	0.73	0.73	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	7RX4	24724	2024-09-26	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.004	0.57	0.0	0.04	16.57	0.00	2.577	4.75	3.97	0.0	100.0	0.0	5.73	0.46	0.62	0.81	0.94	13560	1740	60	0	0	0	0	logfile
✔	7URM	26714	2024-09-23	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.73	0.01	2.031	24.03	0.00	0.0	0.0	0.0	—	1.64	0.15	0.52	—	1905	0	1	90	0	0	0	logfile
✔	7Q5A	13830	2024-09-27	2021-11-03	2.46	2.69	—	2.6	0.012	1.12	0.0	0.06	9.68	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.052	2.81	43.0	0.20	16.17	0.01	1.689	7.32	6.75	0.0	100.0	0.0	1.18	1.63	0.68	0.87	6.18	61600	5600	2400	0	1600	0	0	logfile
✔	7URi	26713	2024-09-23	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.37	0.0	0.06	28.69	0.01	2.168	19.15	0.00	0.0	0.0	0.0	—	2.07	0.08	0.37	—	1905	0	1	90	0	0	0	logfile
✔	6oEF	20020	2024-09-24	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.19	0.0	0.05	5.93	0.00	2.354	3.26	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	7XD5	33136	2024-09-24	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	23.20	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.58	0.0	0.03	23.26	0.00	1.961	4.73	0.00	0.0	0.0	0.0	—	1.38	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	8K15	36786	2024-09-25	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.007	0.83	0.0	0.05	24.74	0.01	1.756	4.81	0.00	0.0	0.0	0.0	—	0.27	0.67	0.80	—	10093	0	2	470	2	0	0	logfile

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