Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8io3	35606	2024-09-26	2023-03-10	3.02	3.99	3.07	3.4	0.015	1.00	0.0	0.05	9.71	0.01	2.369	3.20	0.58	3.6	96.4	0.0	-2.78	0.62	0.85	3.11	3.4	0.004	0.58	0.0	0.04	12.67	0.00	2.574	5.27	0.66	3.8	96.2	0.0	2.79	0.74	0.61	0.86	2.64	13620	1728	8	0	4	0	0	logfile
✔	8G5A	29737	2024-09-29	2023-02-12	3.3	3.11	3.23	3.2	0.005	0.69	0.0	0.08	13.26	0.00	2.026	6.92	0.88	3.6	96.4	0.0	-0.23	0.71	0.86	4.21	3.2	0.003	0.59	0.0	0.04	15.04	0.00	2.478	6.65	1.97	3.9	96.1	0.0	-0.11	0.96	0.72	0.89	3.87	21666	2781	12	0	12	0	0	logfile
✔	8K20	36808	2024-09-25	2023-07-11	3.7	4.39	3.57	3.7	0.003	0.60	0.0	0.04	14.08	0.00	2.100	14.06	0.00	2.8	97.2	0.0	0.88	0.82	0.64	0.83	3.8	0.003	0.65	0.0	0.04	15.94	0.00	2.047	12.99	1.84	3.9	96.1	0.0	0.29	0.96	0.83	0.67	0.74	9356	1209	7	0	1	0	0	logfile
✔	8iAJ	35304	2024-09-28	2023-02-08	3.1	3.21	3.09	3.2	0.006	0.86	0.0	0.05	13.91	0.01	2.176	7.45	0.61	7.4	92.5	0.1	-0.31	0.74	0.87	3.03	3.2	0.004	0.60	0.0	0.04	15.41	0.00	2.487	3.62	1.57	5.2	94.8	0.0	0.70	1.13	0.72	0.88	2.61	20768	2602	10	0	4	0	0	logfile
✔	8oDZ	16820	2024-09-26	2023-03-10	3.6	4.15	3.66	4.0	0.004	0.81	0.0	0.05	15.38	0.01	2.198	7.83	0.22	4.6	95.4	0.0	-0.87	0.70	0.74	1.64	4.0	0.004	0.74	0.0	0.04	16.47	0.01	2.311	13.40	3.63	4.7	95.3	0.0	-0.60	1.07	0.71	0.75	1.33	12100	1516	8	0	9	1	0	logfile
✔	8QSQ	18639	2024-09-24	2023-10-11	3.7	4.53	6.42	3.8	0.002	0.46	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.004	0.77	0.0	0.04	14.41	0.00	2.498	22.89	1.58	5.0	95.0	0.0	-0.37	2.40	0.64	0.74	0.72	6512	791	3	0	6	0	0	logfile
✔	7YP2	33994	2024-09-23	2022-08-02	3.52	3.74	3.49	3.7	0.007	0.93	0.0	0.05	14.66	0.01	2.294	3.19	0.00	8.0	92.0	0.0	-4.80	0.68	0.87	2.84	3.7	0.003	0.58	0.0	0.04	15.57	0.00	2.571	4.50	1.49	5.7	94.3	0.0	-1.25	0.43	0.63	0.85	2.92	4248	546	3	0	0	0	0	logfile
✔	8RoY	19407	2024-09-24	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.002	0.59	0.0	0.04	14.85	0.00	2.461	4.08	3.08	4.3	95.7	0.0	-0.76	1.01	0.79	0.82	2.74	8294	1174	4	0	1	0	0	logfile
✔	8JMA	36411	2024-09-30	2023-06-04	2.5	2.43	2.54	2.6	0.004	0.51	0.0	0.04	16.39	0.00	2.210	4.35	0.61	1.3	98.7	0.0	3.05	0.61	0.81	3.53	2.6	0.002	0.43	0.0	0.03	16.51	0.00	2.296	2.19	0.38	2.4	97.6	0.0	4.00	0.26	0.60	0.81	3.67	24568	1524	8	0	4	0	12472	logfile
✔	8ZNC	60267	2024-09-23	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.004	0.60	0.0	0.05	19.13	0.00	2.439	5.12	1.76	1.9	98.1	0.0	0.99	0.95	0.50	0.91	3.93	3356	416	2	0	3	24	0	logfile
✔	8QZ9	18773	2024-09-30	2023-10-26	2.95	3.51	3.11	3.3	0.003	0.48	0.0	0.04	13.37	0.00	2.202	3.64	0.00	4.1	95.9	0.0	0.82	0.79	0.87	3.07	3.3	0.003	0.57	0.0	0.04	15.61	0.00	2.481	2.95	1.46	4.3	95.7	0.0	0.95	0.90	0.76	0.85	2.60	24217	3213	16	0	21	0	0	logfile
✔	8WMD	37650	2024-09-30	2023-10-03	2.71	3.30	2.79	3.2	0.003	0.52	0.0	0.05	12.40	0.00	2.028	5.01	0.34	3.9	96.1	0.0	0.09	0.80	0.82	2.93	3.2	0.003	0.59	0.0	0.04	13.52	0.00	2.334	5.36	1.57	3.8	96.2	0.0	0.14	1.11	0.82	0.85	2.73	24429	3063	6	0	33	0	0	logfile
✔	8SKR	40565	2024-09-25	2023-04-20	2.99	3.74	3.11	3.5	0.004	0.57	0.0	0.04	10.59	0.00	2.219	7.13	0.00	2.4	97.6	0.0	2.30	0.81	0.85	2.93	3.6	0.003	0.50	0.0	0.04	12.45	0.00	2.566	5.07	1.65	2.1	97.9	0.0	2.52	0.39	0.80	0.85	3.20	6332	804	4	0	2	0	0	logfile
✔	7YP1	33992	2024-09-23	2022-08-02	3.54	3.78	3.54	3.8	0.010	1.05	0.0	0.06	14.05	0.01	2.275	3.74	0.24	9.9	90.1	0.0	-5.19	0.66	0.84	3.95	3.8	0.004	0.60	0.0	0.04	16.02	0.00	2.576	4.94	3.13	5.9	94.1	0.0	-2.48	0.48	0.66	0.84	2.48	3770	490	4	0	0	0	0	logfile
✔	8iWK	35769	2024-09-24	2023-03-30	3.0	3.18	2.97	3.2	0.010	1.10	0.0	0.06	10.00	0.01	2.313	1.92	0.00	9.2	90.8	0.0	-6.57	0.65	0.83	3.72	3.2	0.003	0.66	0.0	0.04	13.92	0.00	2.580	4.53	2.49	6.4	93.6	0.0	-1.26	1.18	0.67	0.85	2.62	8479	1090	3	0	1	0	0	logfile
✔	8iED	35380	2024-09-25	2023-02-15	3.33	3.65	3.34	3.7	0.006	0.77	0.0	0.05	14.18	0.01	2.166	4.69	0.00	5.2	94.8	0.0	-0.47	0.58	0.72	1.64	3.7	0.003	0.65	0.0	0.04	15.82	0.00	2.460	9.80	2.11	4.9	95.1	0.0	0.55	0.70	0.57	0.75	1.54	10694	1396	8	0	2	0	0	logfile
✔	8WXE	37904	2024-09-23	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.89	0.0	0.04	18.41	0.00	2.476	12.77	8.76	4.8	95.2	0.0	-0.30	0.94	0.56	0.74	—	4388	548	9	0	1	0	0	logfile
✔	8XW0	38725	2024-09-25	2024-01-15	3.11	3.37	2.97	3.4	0.005	0.91	0.0	0.05	19.55	0.01	2.126	10.61	0.83	9.7	90.3	0.0	-0.53	0.60	0.81	2.07	3.4	0.003	0.62	0.0	0.04	17.70	0.00	2.398	7.39	1.41	7.8	92.2	0.0	0.43	1.55	0.65	0.84	1.50	11320	1392	4	0	4	0	0	logfile
✔	8WQD	37740	2024-09-23	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.003	0.53	0.0	0.04	16.80	0.00	2.532	9.02	2.19	6.1	93.9	0.0	0.45	0.33	0.68	0.83	1.82	5046	641	2	0	0	0	0	logfile
✔	8V6N	42997	2024-09-29	2023-12-01	2.59	2.81	2.72	2.9	0.008	1.22	0.0	0.05	16.90	0.01	2.274	3.79	0.00	5.6	94.4	0.0	-6.02	0.59	0.78	3.84	2.9	0.003	0.64	0.0	0.04	17.45	0.00	2.306	5.29	2.03	5.4	94.6	0.0	0.66	1.13	0.65	0.86	3.48	22185	2544	12	0	33	184	0	logfile

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