Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XoV	22281	2024-09-24	2020-07-07	3.3	3.79	3.30	3.4	0.005	0.76	1.0	0.05	14.28	0.01	2.100	13.73	0.35	5.0	95.0	0.0	-1.92	0.85	0.80	2.36	3.5	0.003	0.67	0.0	0.04	15.28	0.00	2.496	8.85	0.58	3.3	96.7	0.0	0.77	0.99	0.84	0.81	1.74	7755	969	3	0	3	0	0	logfile
✔	6Q2S	20579	2024-09-26	2019-08-08	3.8	4.19	—	4.0	0.008	1.06	0.0	0.06	9.19	0.01	1.366	3.84	0.13	7.6	92.4	0.0	-4.58	0.64	0.51	0.55	4.1	0.004	0.87	0.0	0.05	14.31	0.01	2.025	13.80	3.12	7.5	92.5	0.0	-2.13	1.85	0.74	0.71	0.51	13726	1734	10	0	22	0	0	logfile
✔	7VGF	31967	2024-09-24	2021-09-16	3.3	3.62	—	3.5	0.004	0.70	0.0	0.04	14.50	0.00	2.083	9.67	0.24	3.3	96.7	0.0	2.62	0.63	0.74	1.47	3.5	0.003	0.54	0.0	0.04	15.61	0.00	2.003	6.20	3.22	2.7	97.3	0.0	2.83	0.49	0.69	0.80	1.51	8280	1100	4	0	4	0	0	logfile
✔	6UZY	20964	2024-09-27	2019-11-15	3.38	3.52	—	3.5	0.012	1.10	7.0	0.07	17.60	0.01	2.265	6.91	0.00	2.6	97.4	0.0	-3.44	0.66	0.82	2.53	3.5	0.003	0.53	0.0	0.04	16.24	0.00	2.578	5.47	1.08	2.1	97.9	0.0	1.73	0.35	0.61	0.81	1.92	16212	1946	14	0	21	0	0	logfile
✔	7YoJ	33983	2024-09-25	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	24.11	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.63	0.0	0.03	23.71	0.00	2.334	10.28	2.46	4.2	95.8	0.0	0.32	1.01	0.78	0.81	1.84	11545	867	4	216	0	0	0	logfile
✔	7QBC	13886	2024-09-23	2021-11-18	3.53	3.78	3.55	3.8	0.008	0.97	0.0	0.05	13.18	0.01	2.055	3.75	0.43	4.9	95.1	0.0	-2.40	0.56	0.74	2.58	3.8	0.004	0.69	0.0	0.04	14.51	0.01	2.546	9.37	1.91	4.7	95.3	0.0	1.29	0.53	0.61	0.78	1.22	5054	622	6	0	16	0	0	logfile
✔	7Y27	33587	2024-09-24	2022-06-09	3.48	3.96	3.59	3.9	0.012	0.63	0.0	0.06	13.37	0.00	2.204	5.95	0.00	3.7	96.2	0.1	0.16	0.67	0.81	2.45	4.0	0.002	0.56	0.0	0.04	14.97	0.00	2.414	3.83	2.07	3.2	96.8	0.0	0.86	0.95	0.67	0.82	1.89	8184	1137	7	0	1	0	0	logfile
✔	7FH1	31584	2024-09-26	2021-07-29	3.34	3.67	—	3.6	0.009	1.20	9.0	0.07	21.25	0.02	2.200	19.78	3.15	14.2	85.8	0.0	-3.88	0.76	0.84	3.13	3.6	0.003	0.74	0.0	0.04	15.84	0.00	2.453	5.41	1.65	7.7	92.3	0.0	-1.01	1.98	0.74	0.87	2.70	13672	1748	10	0	22	0	0	logfile
✔	6SE0	10151	2024-09-26	2019-07-29	3.8	4.73	—	4.6	0.009	1.01	0.0	0.06	28.08	0.01	2.248	4.43	0.00	0.9	99.1	0.0	-2.82	0.80	0.78	0.85	4.6	0.004	0.66	0.0	0.03	28.12	0.00	2.087	12.70	3.83	1.7	98.3	0.0	0.92	0.65	0.80	0.78	0.60	12002	765	10	290	0	0	0	logfile
✔	7To0	26025	2024-09-24	2022-01-22	3.5	3.68	—	3.7	0.011	1.17	0.0	0.07	16.44	0.00	2.288	8.07	0.82	7.5	92.5	0.0	-3.00	0.72	0.81	2.21	3.7	0.003	0.57	0.0	0.04	17.80	0.00	2.564	8.24	3.12	8.4	91.6	0.0	-0.39	0.54	0.74	0.82	2.48	5989	682	4	24	1	0	0	logfile
✔	7ZRG	14913	2024-09-25	2022-05-04	3.5	3.19	3.44	3.3	0.004	0.78	0.0	0.05	16.91	0.01	2.291	6.53	0.00	4.5	95.5	0.0	-1.09	0.64	0.80	1.65	3.3	0.003	0.56	0.0	0.04	16.88	0.00	2.412	8.27	1.68	4.0	96.0	0.0	0.65	0.31	0.64	0.81	1.16	11032	1448	6	0	10	0	0	logfile
✔	7ARJ	11884	2024-09-25	2020-10-25	3.2	3.48	—	3.4	0.005	0.80	0.0	0.05	13.52	0.01	2.312	3.21	0.10	5.0	95.0	0.0	-5.75	0.66	0.74	1.55	3.4	0.005	0.75	0.0	0.05	16.23	0.00	2.039	9.26	2.82	4.7	95.3	0.0	-1.16	1.33	0.70	0.83	2.05	9601	1262	8	0	6	0	0	logfile
✔	7EVN	31330	2024-09-28	2021-05-21	2.6	2.63	—	2.6	0.006	0.86	0.0	0.05	17.47	0.01	2.168	8.61	6.98	4.7	95.2	0.2	-2.09	0.69	0.80	2.93	2.6	0.003	0.63	0.0	0.04	17.63	0.00	2.480	4.56	2.92	4.1	95.9	0.0	0.20	1.20	0.73	0.87	2.76	19668	2649	6	0	3	0	0	logfile
✔	6V6D	21071	2024-09-26	2019-12-05	3.77	3.87	—	3.8	0.005	0.95	0.0	0.06	13.31	0.01	2.030	6.03	0.00	2.0	98.0	0.0	-2.17	0.63	0.85	3.10	3.8	0.003	0.69	0.0	0.04	16.24	0.00	2.480	5.53	2.72	2.4	97.6	0.0	1.44	0.65	0.63	0.85	2.94	11739	1463	7	0	0	0	0	logfile
✔	6NZo	0559	2024-09-26	2019-02-14	3.8	4.12	—	4.0	0.007	0.93	0.0	0.06	27.02	0.01	2.313	3.45	0.12	4.8	95.1	0.1	-1.08	0.78	0.76	1.27	4.0	0.005	0.68	0.0	0.04	27.83	0.00	2.507	14.95	3.67	5.1	94.9	0.0	0.55	1.61	0.79	0.77	0.77	13738	985	12	290	3	0	0	logfile
✔	6PX1	20516	2024-09-25	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.55	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.003	0.58	0.0	0.03	28.18	0.00	2.453	7.25	1.11	1.5	98.5	0.0	2.60	1.13	0.80	0.84	2.48	11937	752	10	290	0	0	0	logfile
✔	6WGE	21663	2024-09-28	2020-04-05	3.9	4.05	—	4.0	0.007	0.99	0.0	0.06	19.79	0.01	1.921	6.66	0.15	8.3	91.6	0.0	-2.35	0.74	0.85	1.35	3.9	0.004	0.68	0.0	0.04	20.14	0.00	1.884	8.24	1.82	5.4	94.6	0.0	1.45	0.50	0.74	0.84	1.10	20194	2280	8	86	4	0	0	logfile
✔	7K78	22696	2024-09-26	2020-09-22	3.1	3.20	—	3.2	0.004	0.69	0.0	0.04	27.11	0.01	2.149	8.43	0.20	2.7	97.3	0.0	0.24	0.73	0.85	2.54	3.2	0.003	0.58	0.0	0.03	26.33	0.00	2.166	6.72	2.07	3.2	96.8	0.0	1.82	0.35	0.69	0.85	2.39	14125	1198	12	232	0	0	0	logfile
✔	5U6P	8512	2024-09-27	2016-12-08	3.51	3.56	—	3.5	0.007	1.41	0.0	0.07	12.41	0.01	2.399	2.18	0.00	3.2	96.8	0.0	1.31	0.45	0.53	2.72	3.5	0.003	0.60	0.0	0.04	16.55	0.00	2.419	6.84	1.78	1.9	98.1	0.0	2.60	0.63	0.66	0.83	2.34	15640	2016	12	0	80	0	0	logfile
✔	6M4H	30078	2024-09-25	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.22	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	4.0	0.006	0.81	0.0	0.04	29.78	0.00	2.051	16.58	2.31	3.1	96.9	0.0	0.78	1.74	0.87	0.84	0.92	9420	656	10	206	0	0	0	logfile

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