Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DDP	30653	2024-09-24	2020-10-29	3.4	2.88	—	3.3	0.003	0.56	0.0	0.04	14.11	0.00	2.100	8.38	0.29	2.0	98.0	0.0	-1.50	0.70	0.77	2.19	3.3	0.004	0.59	0.0	0.04	16.00	0.00	1.984	7.98	2.01	2.5	97.5	0.0	0.72	0.38	0.71	0.79	1.92	6477	791	4	0	6	0	0	logfile
✔	7R6N	24283	2024-09-24	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	24.91	0.01	1.762	15.26	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	7VBM	31882	2024-09-25	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.39	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.55	0.0	0.03	28.69	0.00	2.526	5.83	1.07	1.7	98.3	0.0	2.83	0.28	0.68	0.80	1.94	10475	677	10	252	0	0	0	logfile
✔	7XJH	33227	2024-09-24	2022-04-18	3.3	2.96	3.18	3.2	0.003	0.58	0.0	0.04	14.02	0.00	2.218	7.28	0.00	3.1	96.9	0.0	0.45	0.60	0.78	2.05	3.2	0.002	0.56	0.0	0.04	15.39	0.00	2.547	5.80	1.72	3.0	97.0	0.0	0.65	0.37	0.63	0.81	1.73	7832	1027	6	0	1	0	0	logfile
✔	6AYE	7018	2024-09-27	2017-09-08	4.06	4.13	—	4.1	0.008	1.23	4.0	0.06	15.26	0.01	2.180	16.12	0.69	5.6	93.8	0.6	-3.48	0.73	0.85	—	4.1	0.003	0.68	0.0	0.04	14.42	0.00	2.538	9.52	0.00	3.2	96.8	0.0	1.37	0.98	0.73	0.80	—	15664	1904	4	0	0	0	0	logfile
✔	7WLR	32591	2024-09-25	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.27	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.003	0.53	0.0	0.03	28.01	0.00	2.165	6.90	1.41	1.2	98.8	0.0	3.29	1.20	0.77	0.82	2.12	11922	754	10	290	0	0	0	logfile
✔	7DQA	30816	2024-09-24	2020-12-22	2.8	2.66	—	2.7	0.007	0.86	0.0	0.05	17.51	0.00	1.918	18.31	6.03	4.8	95.2	0.0	-3.29	0.60	0.69	2.13	2.7	0.003	0.63	0.0	0.04	17.96	0.00	2.055	9.63	1.58	2.5	97.5	0.0	0.70	1.22	0.68	0.75	2.03	6576	791	6	0	7	80	0	logfile
✔	8H1P	34430	2024-09-27	2022-10-03	3.48	3.37	3.43	3.5	0.003	0.56	0.0	0.04	18.45	0.00	2.208	10.09	0.00	0.5	99.5	0.0	0.52	0.71	0.79	0.67	3.4	0.003	0.56	0.0	0.04	18.04	0.00	2.432	7.69	1.66	2.8	97.2	0.0	0.89	0.59	0.70	0.79	1.36	15950	2024	11	0	0	0	0	logfile
✔	7XF5	33169	2024-09-25	2022-04-01	3.9	3.53	3.33	3.5	0.003	0.61	0.0	0.04	14.14	0.00	2.222	8.54	0.58	2.3	97.6	0.1	1.11	0.51	0.67	1.39	3.5	0.003	0.67	0.0	0.04	16.60	0.00	2.540	9.01	2.23	2.9	97.1	0.0	1.60	2.09	0.55	0.72	1.30	9640	1239	2	0	0	0	0	logfile
✔	8GRM	34207	2024-09-29	2022-09-02	3.05	3.23	3.06	3.1	0.009	0.93	0.0	0.06	23.20	0.01	2.289	4.52	0.29	4.4	95.6	0.0	-5.38	0.81	0.81	1.71	3.2	0.003	0.66	0.0	0.04	25.82	0.00	2.140	7.26	1.66	3.6	96.4	0.0	0.25	0.81	0.80	0.87	2.02	15415	1195	16	289	4	0	0	logfile
✔	7VVK	32142	2024-09-24	2021-11-06	3.3	2.24	3.30	3.3	0.015	1.75	0.0	0.09	13.87	0.01	2.220	7.68	0.47	4.2	95.6	0.2	-0.92	0.62	0.71	2.44	3.3	0.002	0.55	0.0	0.04	16.65	0.00	2.485	7.44	1.76	3.3	96.7	0.0	0.69	1.27	0.65	0.71	1.68	8516	1121	6	0	0	0	0	logfile
✔	6R81	4749	2024-09-24	2019-03-30	3.9	4.63	—	4.4	0.011	1.50	6.0	0.07	16.77	0.01	1.538	14.26	1.25	11.5	88.1	0.4	-5.27	0.71	0.82	1.01	4.4	0.004	0.89	0.0	0.05	17.90	0.00	1.875	12.98	3.53	10.3	89.7	0.0	-1.04	2.22	0.69	0.81	0.70	8861	1141	4	0	4	0	0	logfile
✔	6ZN2	11309	2024-09-25	2020-07-06	4.3	2.35	1.71	4.5	0.004	0.93	0.0	0.04	15.06	0.01	2.001	21.27	6.35	4.3	95.7	0.0	-1.42	0.74	0.77	—	4.5	0.004	0.86	0.0	0.05	14.60	0.01	2.061	17.43	0.00	4.9	95.1	0.0	-1.70	1.81	0.73	0.74	—	11320	1412	12	0	8	0	0	logfile
✔	7MQC	23942	2024-09-29	2021-05-05	3.64	3.07	3.58	3.4	0.007	0.81	0.0	0.06	14.36	0.01	2.215	1.31	0.61	0.5	99.5	0.0	1.03	0.71	0.79	3.27	3.4	0.006	0.61	0.0	0.05	15.86	0.00	2.498	2.65	2.00	2.9	97.1	0.0	0.64	0.38	0.75	0.82	3.25	12556	1640	16	16	0	0	0	logfile
✔	7U1E	26299	2024-09-28	2022-02-21	4.52	4.53	—	4.5	0.001	0.42	0.0	0.04	12.91	0.00	2.240	5.36	2.68	3.6	96.4	0.0	-1.42	0.60	0.73	—	4.4	0.004	0.71	0.0	0.05	12.58	0.00	2.400	11.05	0.07	5.4	94.6	0.0	0.01	0.62	0.62	0.76	—	18366	2741	9	0	6	0	0	logfile
✔	7BZ2	30249	2024-09-24	2020-04-26	3.82	3.99	—	3.9	0.004	0.68	0.0	0.05	15.12	0.00	2.101	12.35	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.003	0.69	0.0	0.04	16.81	0.00	2.519	7.77	3.00	4.4	95.6	0.0	-2.37	1.59	0.71	0.77	1.32	7393	978	6	0	1	0	0	logfile
✔	6LXD	30005	2024-09-26	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	16.82	0.00	2.239	15.36	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.78	0.0	0.04	18.04	0.00	2.388	14.64	2.09	9.4	90.6	0.0	-1.70	0.69	0.88	0.80	0.79	9435	963	5	72	2	0	0	logfile
✔	7EFD	31084	2024-09-23	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.76	0.0	0.05	14.63	0.00	2.592	3.49	0.00	4.0	96.0	0.0	0.85	0.48	0.80	0.84	6.22	4004	480	8	0	4	156	0	logfile
✔	7KoG	22975	2024-09-28	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.0	0.003	0.71	0.0	0.04	16.84	0.00	2.401	9.00	0.00	0.4	99.6	0.0	2.99	1.90	0.75	0.75	—	17384	2154	2	0	0	0	0	logfile
✔	7CKM	30388	2024-09-26	2020-07-17	3.37	3.45	—	3.4	0.003	0.58	1.0	0.04	14.02	0.00	2.250	7.29	3.56	8.6	91.4	0.0	-2.94	0.75	0.81	2.53	3.4	0.003	0.61	0.0	0.04	16.31	0.00	2.185	6.03	3.76	7.7	92.3	0.0	-0.45	0.46	0.75	0.83	1.83	13114	1652	4	0	5	0	0	logfile

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