Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VRH	21368	2024-09-24	2020-02-07	3.3	3.68	3.56	3.6	0.004	0.60	0.0	0.04	13.50	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.59	0.0	0.04	15.30	0.00	2.542	8.11	3.85	5.1	94.9	0.0	-0.19	0.39	0.48	0.74	1.54	6142	764	4	0	5	0	0	logfile
✔	7SYK	25531	2024-09-30	2021-11-25	4.2	3.51	4.09	3.3	0.003	0.83	0.0	0.04	22.20	0.01	2.255	5.27	0.02	5.9	94.0	0.0	-2.72	0.67	0.67	—	3.3	0.004	0.73	0.0	0.04	22.19	0.01	2.099	12.80	0.07	9.4	90.6	0.0	-1.76	1.44	0.68	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	8FiS	29209	2024-09-28	2022-12-16	3.18	3.36	3.47	3.5	0.006	0.83	1.0	0.05	19.55	0.00	2.110	3.15	0.25	5.5	94.5	0.0	-0.93	0.80	0.80	2.46	3.5	0.002	0.62	0.0	0.04	14.27	0.00	2.452	6.03	2.21	5.0	94.9	0.0	-0.24	0.63	0.79	0.84	2.07	20356	2357	57	0	142	0	0	logfile
✔	7LY9	23589	2024-09-29	2021-03-06	3.91	4.69	3.95	4.1	0.005	0.72	3.0	0.05	15.51	0.00	2.003	4.11	0.76	5.8	94.2	0.0	-0.23	0.76	0.75	1.10	4.1	0.006	0.82	1.0	0.05	14.88	0.00	2.130	12.91	1.66	7.3	92.7	0.0	-0.87	0.69	0.82	0.86	1.70	21464	2538	35	0	96	0	0	logfile
✔	8G9X	29881	2024-09-27	2023-02-22	4.46	7.28	4.57	4.4	0.008	1.32	2.0	0.07	19.10	0.01	2.188	9.75	0.00	9.0	90.9	0.2	-4.84	0.87	0.83	—	4.4	0.003	0.74	0.0	0.04	12.77	0.00	2.391	11.98	0.00	6.9	93.1	0.0	-1.87	1.59	0.87	0.85	—	17036	1983	53	0	111	0	0	logfile
✔	7ADo	11732	2024-09-27	2020-09-15	3.39	4.05	3.45	3.8	0.008	0.96	0.0	0.05	16.08	0.01	1.890	6.60	0.11	3.0	97.0	0.0	-4.86	0.78	0.82	2.95	3.8	0.004	0.77	0.0	0.04	16.71	0.00	2.520	6.36	1.94	9.7	90.3	0.0	-1.11	1.34	0.78	0.85	2.25	16845	2069	15	0	25	0	0	logfile
✔	7UY7	26866	2024-09-27	2022-05-06	4.2	4.18	4.04	3.2	0.002	0.56	1.0	0.04	15.12	0.00	2.203	13.96	0.18	3.8	96.2	0.0	-0.53	0.73	0.74	—	3.2	0.003	0.62	0.0	0.04	15.65	0.00	2.458	12.05	0.00	4.2	95.8	0.0	-0.75	1.24	0.73	0.76	—	15161	1808	7	10	1	0	0	logfile
✔	7B6X	12057	2024-09-25	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.45	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.003	0.77	0.0	0.05	16.31	0.00	2.398	19.91	4.03	7.9	92.1	0.0	-1.12	1.37	0.75	0.71	-0.01	10470	1290	8	0	0	0	0	logfile
✔	8i0N	35104	2024-09-25	2023-01-11	3.26	3.46	3.26	3.5	0.006	0.71	0.0	0.04	14.61	0.00	2.273	3.54	0.62	4.6	95.4	0.0	0.08	0.76	0.83	2.70	3.4	0.005	0.62	0.0	0.04	15.31	0.00	2.537	5.04	1.75	4.8	95.2	0.0	0.39	0.42	0.76	0.84	2.60	9141	1190	8	0	0	0	0	logfile
✔	8D8J	27249	2024-09-24	2022-06-08	3.8	3.18	3.54	3.0	0.003	0.66	0.0	0.42	20.92	0.01	1.928	4.14	0.04	2.2	97.8	0.0	0.35	0.53	0.69	2.35	3.1	0.007	0.96	0.0	0.13	21.11	0.00	1.840	10.72	2.49	3.6	96.4	0.0	0.43	2.19	0.54	0.70	2.01	51386	3402	18	1183	30	0	0	logfile
✔	8E98	27959	2024-09-27	2022-08-26	3.75	4.03	3.75	3.8	0.011	1.09	1.0	0.05	18.58	0.01	2.155	6.38	0.15	7.9	92.1	0.0	-1.29	0.79	0.76	1.70	3.8	0.003	0.71	0.0	0.05	14.65	0.00	2.302	5.50	3.59	6.6	93.3	0.0	-0.67	0.46	0.80	0.77	1.57	17208	2583	11	0	18	0	0	logfile
✔	8G86	29837	2024-09-26	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.26	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.5	0.004	0.62	0.0	0.04	28.89	0.00	2.104	7.04	3.64	1.2	98.8	0.0	2.56	0.91	0.69	0.85	4.76	11972	759	10	290	0	0	0	logfile
✔	7SYo	25535	2024-09-30	2021-11-25	4.6	3.80	4.55	3.8	0.003	0.85	0.0	0.04	22.28	0.01	2.226	5.43	0.05	5.1	94.9	0.0	-2.93	0.62	0.68	—	3.7	0.002	0.60	0.0	0.04	22.16	0.00	2.004	10.09	0.02	5.1	94.9	0.0	-1.31	1.10	0.62	0.69	—	78846	4891	38	1863	2	0	0	logfile
✔	7WiJ	32531	2024-09-26	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.51	0.0	0.03	15.58	0.00	2.626	3.20	1.66	0.6	99.4	0.0	3.52	0.28	0.71	0.87	1.45	12396	1602	6	0	0	0	0	logfile
✔	8CSQ	26967	2024-09-28	2022-05-13	2.54	2.41	2.53	2.7	0.004	0.64	0.0	0.39	18.55	0.01	1.958	2.63	0.00	1.7	98.3	0.0	1.13	0.72	0.79	3.59	2.7	0.004	0.79	0.0	0.12	19.69	0.00	1.992	5.19	1.65	1.9	98.1	0.0	1.77	1.57	0.71	0.81	3.28	67706	6265	40	803	37	0	0	logfile
✔	7SYG	25527	2024-09-30	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	22.16	0.01	2.257	4.87	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.005	0.78	0.0	0.04	22.35	0.01	2.155	13.72	0.05	8.2	91.8	0.0	-1.82	1.10	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile
✔	7SYN	25534	2024-09-30	2021-11-25	4.0	3.26	3.82	3.2	0.002	0.49	0.0	0.03	21.99	0.00	2.115	9.69	0.00	4.8	95.2	0.0	-0.83	0.64	0.72	—	3.2	0.004	0.68	0.0	0.04	22.38	0.01	2.147	9.50	2.85	7.9	92.1	0.0	-1.32	1.04	0.65	0.74	—	78761	4891	38	1859	2	0	0	logfile
✔	7WSR	32765	2024-09-25	2022-02-01	2.9	3.08	2.90	3.1	0.004	0.65	0.0	0.04	10.32	0.00	2.244	4.74	0.83	1.8	98.2	0.0	1.52	0.62	0.82	2.75	3.1	0.003	0.63	0.0	0.04	14.57	0.00	2.538	7.37	2.91	3.0	97.0	0.0	2.10	0.97	0.61	0.84	2.42	9366	1200	4	0	4	0	0	logfile
✔	8CSP	26966	2024-09-28	2022-05-13	2.66	2.56	2.70	2.8	0.004	0.65	0.0	0.39	18.40	0.01	1.957	2.81	0.00	1.7	98.3	0.0	0.74	0.72	0.79	3.50	2.8	0.004	0.84	1.0	0.12	19.61	0.00	1.945	5.43	1.46	2.0	98.0	0.0	1.62	0.48	0.72	0.81	3.07	69302	6645	40	738	38	0	0	logfile
✔	7Li9	23364	2024-09-24	2021-01-26	3.9	4.05	—	4.0	0.003	0.56	0.0	0.04	13.56	0.00	2.309	6.39	0.00	5.4	94.6	0.0	-3.52	0.64	0.73	1.52	4.0	0.003	0.66	0.0	0.04	15.10	0.00	2.474	7.93	2.80	8.3	91.7	0.0	-0.98	1.33	0.69	0.82	1.64	6174	767	5	0	13	0	0	logfile

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