Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PS8	17846	2024-09-28	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.63	0.0	0.04	4.23	0.00	2.532	1.62	0.00	6.9	93.1	0.0	0.14	0.65	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	8Q0N	18056	2024-09-27	2023-07-28	4.2	4.02	3.99	4.1	0.002	0.48	0.0	0.04	13.78	0.00	2.181	5.46	0.00	1.7	98.3	0.0	1.28	0.56	0.43	—	3.9	0.004	0.63	0.0	0.04	14.46	0.00	2.326	7.53	0.00	5.0	95.0	0.0	0.56	1.05	0.68	0.65	—	15917	1009	4	0	2	0	7910	logfile
✔	8Ci2	16666	2024-09-29	2023-02-08	4.4	4.61	4.35	4.3	0.005	0.62	0.0	0.05	16.54	0.00	2.014	6.56	0.00	14.9	85.1	0.0	-3.01	0.80	0.69	—	4.3	0.003	0.62	0.0	0.04	13.16	0.00	2.288	7.84	0.00	14.3	85.7	0.0	-3.11	0.94	0.86	0.79	—	21547	1393	18	0	20	0	10298	logfile
✔	7YSR	34081	2024-09-26	2022-08-12	4.3	4.43	4.10	4.3	0.003	0.59	0.0	0.04	14.91	0.00	2.142	14.24	0.00	4.0	96.0	0.0	0.51	0.60	0.82	—	4.3	0.003	0.61	0.0	0.04	14.85	0.00	2.345	9.48	0.00	3.0	97.0	0.0	0.70	1.58	0.60	0.83	—	13456	1696	8	0	4	0	0	logfile
✔	8AZ1	15729	2024-09-23	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.52	0.0	0.05	12.66	0.00	1.827	2.57	0.00	0.0	100.0	0.0	-2.20	0.43	0.45	0.83	5.69	1830	250	20	0	10	0	0	logfile
✔	8HPL	34932	2024-09-26	2022-12-12	4.29	4.66	4.34	4.3	0.012	1.78	1.0	0.09	12.90	0.01	2.269	5.50	0.00	8.9	91.1	0.0	-2.47	0.70	0.80	—	4.3	0.003	0.70	0.0	0.04	12.20	0.00	2.461	7.88	0.00	4.2	95.8	0.0	-0.17	0.79	0.70	0.80	—	12013	1757	8	0	4	0	0	logfile
✔	8G14	29661	2024-09-25	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.49	0.0	0.05	15.68	0.00	2.619	1.21	0.00	3.0	97.0	0.0	0.78	0.19	0.88	0.93	5.29	10020	1336	4	0	0	0	0	logfile
✔	8BG6	16024	2024-09-23	2022-10-27	4.11	4.22	3.92	4.2	0.006	0.94	0.0	0.06	12.58	0.01	2.348	6.39	0.00	6.9	93.1	0.0	-0.90	0.73	0.80	—	4.1	0.003	0.65	0.0	0.04	12.71	0.00	2.602	4.91	0.00	4.8	95.2	0.0	-0.15	0.95	0.74	0.84	—	3124	398	4	0	1	0	0	logfile
✔	8DZZ	27810	2024-09-24	2022-08-08	4.1	4.63	4.25	4.1	0.004	0.74	5.0	0.05	12.49	0.00	2.145	3.15	0.25	1.6	98.4	0.0	1.15	0.88	0.81	—	4.1	0.002	0.55	0.0	0.04	12.63	0.00	2.455	6.38	0.00	1.7	98.3	0.0	1.82	0.51	0.89	0.85	—	49596	6110	8	0	8	0	0	logfile
✔	7YMD	33927	2024-09-23	2022-07-28	4.176	4.25	4.12	4.2	0.002	0.48	0.0	0.04	12.74	0.00	2.026	9.75	0.00	7.4	92.6	0.0	0.16	0.61	0.69	—	4.2	0.004	0.72	0.0	0.04	14.05	0.00	2.450	11.25	0.00	8.5	91.5	0.0	-0.85	0.52	0.63	0.73	—	5653	705	3	0	0	0	0	logfile
✔	8TBY	41148	2024-09-29	2023-06-29	4.4	6.50	4.43	4.5	0.002	0.56	0.0	0.04	14.36	0.00	2.261	11.05	0.00	3.0	97.0	0.0	1.99	0.83	0.83	—	4.5	0.004	0.63	0.0	0.04	14.42	0.00	2.393	14.19	0.00	3.6	96.4	0.0	1.79	1.84	0.84	0.87	—	21126	2618	7	0	0	0	0	logfile
✔	8HJW	34840	2024-09-28	2022-11-24	4.1	4.34	4.18	4.2	0.003	0.70	0.0	0.04	13.47	0.00	2.134	13.05	0.47	2.2	97.5	0.3	0.71	0.80	0.70	—	4.2	0.003	0.68	0.0	0.04	13.46	0.00	2.388	11.32	0.00	2.7	97.3	0.0	0.57	1.24	0.83	0.77	—	18516	2430	2	0	0	0	0	logfile
✔	8UPY	42457	2024-09-23	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.49	0.01	2.036	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	7Y0o	33551	2024-09-23	2022-06-05	4.4	3.19	4.10	3.0	0.004	0.93	0.0	0.06	15.07	0.01	2.254	9.72	0.00	9.8	90.1	0.2	-3.24	0.65	0.55	—	3.1	0.003	0.77	0.0	0.05	15.21	0.00	2.424	14.27	0.00	10.9	89.1	0.0	-3.24	0.39	0.65	0.56	—	4185	541	6	0	0	18	0	logfile
✔	8HRG	34972	2024-09-26	2022-12-15	4.5	4.83	4.51	4.6	0.003	0.70	0.0	0.05	12.33	0.00	2.127	11.61	0.00	7.0	92.7	0.3	-0.76	0.85	0.83	—	4.6	0.003	0.59	0.0	0.04	12.23	0.00	2.580	8.16	0.00	7.5	92.2	0.3	-0.89	0.52	0.84	0.84	—	61173	7854	21	0	0	0	0	logfile
✔	8JUZ	36667	2024-09-30	2023-06-27	4.29	4.11	4.43	3.9	0.003	0.72	0.0	0.04	15.18	0.00	2.131	9.33	0.07	6.6	93.3	0.1	-0.25	0.66	0.49	—	3.9	0.003	0.74	0.0	0.04	14.71	0.00	2.300	9.94	0.00	6.6	93.3	0.1	0.16	1.56	0.78	0.70	—	25274	3155	12	0	6	0	0	logfile
✔	8VE6	43166	2024-09-23	2023-12-18	4.1	4.24	3.95	4.2	0.004	0.67	0.0	0.05	11.95	0.01	2.230	9.76	0.00	3.7	96.3	0.0	-0.17	0.80	0.81	—	4.2	0.002	0.61	0.0	0.05	12.10	0.01	2.610	4.11	0.00	1.5	98.5	0.0	-0.17	0.43	0.78	0.79	—	3178	465	5	0	1	0	0	logfile
✔	8iQF	35660	2024-09-27	2023-03-16	4.6	4.96	4.72	4.5	0.003	0.63	0.0	0.00	4.93	0.00	1.995	4.78	0.00	4.2	95.8	0.0	-0.27	0.79	0.61	—	4.5	0.004	0.89	0.0	0.00	5.92	0.00	2.332	1.74	0.00	18.1	81.9	0.0	-2.88	3.20	0.82	0.65	—	9072	2268	10	0	0	0	0	logfile
✔	8JTD	36641	2024-09-27	2023-06-21	4.9	4.51	4.64	4.6	0.005	0.93	0.0	0.07	17.49	0.00	2.048	20.29	0.00	3.8	96.1	0.1	-0.29	0.63	0.55	—	4.6	0.006	1.01	0.0	0.06	12.93	0.01	2.269	26.10	0.00	6.7	93.3	0.0	-1.21	0.69	0.68	0.65	—	17275	1978	51	0	128	0	0	logfile
✔	8K7A	36936	2024-09-25	2023-07-26	4.2	6.79	4.47	6.7	0.007	1.46	2.0	0.07	14.73	0.01	1.638	7.00	0.30	6.0	93.3	0.7	-3.62	0.70	0.75	—	6.7	0.003	0.75	0.0	0.04	14.00	0.00	1.931	11.74	0.00	4.5	95.2	0.3	-0.06	0.56	0.71	0.81	—	8918	1126	4	0	4	0	0	logfile

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