Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DZW	30915	2024-09-26	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.004	0.95	0.0	0.00	6.22	0.00	2.310	1.46	0.00	17.8	82.1	0.1	-2.66	2.03	0.77	0.74	—	13452	3363	3	0	0	0	0	logfile
✔	6S2E	10088	2024-09-26	2019-06-20	4.2	4.38	4.22	4.2	0.009	1.53	0.0	0.13	14.14	0.01	2.218	7.77	1.88	4.7	95.2	0.1	-1.45	0.81	0.75	—	4.2	0.003	0.68	0.0	0.04	13.61	0.00	2.416	9.38	0.00	2.6	97.4	0.0	0.34	1.67	0.81	0.74	—	12459	1539	5	0	1	0	0	logfile
✔	7KEW	22841	2024-09-26	2020-10-13	4.16	4.63	—	4.4	0.022	1.88	3.0	0.12	11.74	0.01	2.030	0.73	0.00	3.2	96.5	0.4	0.12	0.59	0.68	—	4.4	0.004	0.84	0.0	0.05	12.42	0.01	2.438	13.71	0.00	7.6	92.4	0.0	-1.28	1.93	0.62	0.76	—	13173	1650	21	0	24	0	0	logfile
✔	7JGG	22326	2024-09-23	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.003	0.58	0.0	0.04	13.02	0.00	2.280	86.02	0.00	6.1	93.9	0.0	0.54	1.33	0.66	0.71	—	4210	506	1	0	0	0	28	logfile
✔	6CEB	7463	2024-09-26	2018-02-11	4.7	5.92	—	4.7	0.006	1.02	0.0	0.06	11.44	0.01	1.288	8.80	0.00	11.8	88.0	0.2	-3.39	0.88	0.82	—	4.7	0.008	0.99	0.0	0.05	11.24	0.01	2.423	29.14	0.00	13.9	86.1	0.0	-2.61	2.07	0.89	0.85	—	11722	1406	20	0	30	0	0	logfile
✔	6CE9	7462	2024-09-25	2018-02-11	4.3	4.83	—	4.4	0.008	1.06	0.0	0.06	11.76	0.01	2.314	7.35	0.00	12.6	87.1	0.3	-3.39	0.86	0.83	—	4.3	0.004	0.76	0.0	0.05	11.19	0.00	2.392	12.10	0.00	10.8	89.2	0.0	-2.03	1.38	0.87	0.84	—	10782	1286	20	0	30	0	0	logfile
✔	3J1B	5391	2024-09-26	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.85	0.0	0.05	15.00	0.01	2.426	12.93	0.00	4.8	94.4	0.8	0.80	2.24	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	5TCP	8398	2024-09-29	2016-09-15	4.3	3.93	—	4.0	0.013	1.38	0.0	0.07	9.90	0.01	2.479	0.74	0.00	3.5	95.5	1.1	-0.87	0.77	0.79	—	4.0	0.005	0.67	0.0	0.04	12.84	0.00	2.494	4.88	0.00	4.1	95.9	0.0	1.24	0.86	0.81	0.85	—	72888	9072	48	0	0	0	0	logfile
✔	6oR5	9032	2024-09-25	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	15.95	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.004	0.70	0.0	0.04	10.42	0.00	2.477	1.35	0.00	19.2	80.8	0.0	-2.56	1.36	0.78	0.80	—	10364	2058	2	0	5	0	0	logfile
✔	7T76	25735	2024-09-27	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.004	0.75	0.0	0.05	11.88	0.00	1.085	11.16	0.00	5.2	94.8	0.0	-0.54	1.87	0.81	0.82	—	16587	1934	42	0	104	0	0	logfile
✔	7T77	25736	2024-09-27	2021-12-14	4.75	4.98	4.61	4.8	0.022	1.83	4.0	0.15	13.67	0.02	2.295	1.06	0.87	2.7	97.0	0.3	0.38	0.80	0.77	—	4.8	0.004	0.73	0.0	0.05	11.73	0.00	2.344	11.39	0.00	4.8	95.2	0.0	-0.42	1.52	0.81	0.81	—	16832	1956	42	0	105	0	0	logfile
✔	6Y97	10733	2024-09-23	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.29	0.00	2.557	12.52	0.00	6.7	93.3	0.0	0.59	0.85	0.71	0.72	—	4366	564	4	0	0	0	0	logfile
✔	7KF9	22847	2024-09-26	2020-10-13	4.4	5.43	—	4.5	0.021	1.88	0.0	0.12	12.39	0.01	2.470	0.89	0.43	2.4	97.6	0.0	0.37	0.68	0.77	—	4.5	0.003	0.69	0.0	0.04	11.60	0.00	2.363	13.06	0.00	4.6	95.4	0.0	-0.49	0.86	0.69	0.81	—	13161	1662	18	0	24	0	0	logfile
✔	5V8L	8643	2024-09-29	2017-03-22	4.3	4.43	4.15	4.3	0.015	1.85	1.0	0.12	14.73	0.01	1.786	7.02	0.39	1.7	98.1	0.2	2.30	0.72	0.73	—	4.3	0.005	0.83	0.0	0.05	12.51	0.00	2.355	12.34	0.00	4.2	95.8	0.0	-0.06	1.02	0.74	0.79	—	22934	2635	63	0	157	0	0	logfile
✔	6QVU	4657	2024-09-25	2019-03-05	4.2	6.05	4.20	6.9	0.006	1.31	0.0	0.06	12.34	0.01	2.191	10.73	1.99	9.3	90.7	0.0	-4.21	0.65	0.75	—	7.0	0.003	0.87	0.0	0.05	11.46	0.01	2.347	15.98	0.00	7.6	92.4	0.0	-0.45	1.38	0.66	0.76	—	9272	1198	2	0	0	0	0	logfile
✔	6QVB	4646	2024-09-25	2019-03-01	4.34	5.06	4.26	4.4	0.010	1.72	8.0	0.09	12.75	0.01	2.153	12.31	3.10	10.3	89.5	0.2	-4.45	0.67	0.75	—	4.4	0.003	0.93	0.0	0.05	12.38	0.00	2.365	16.84	0.00	8.1	91.8	0.1	-0.39	0.88	0.67	0.75	—	9237	1193	2	0	0	0	0	logfile
✔	6So5	10266	2024-09-24	2019-08-29	4.2	4.36	—	4.2	0.005	0.82	0.0	0.04	14.99	0.01	1.973	23.55	0.00	10.2	89.8	0.0	-4.60	0.68	0.79	—	4.2	0.004	0.83	0.0	0.05	14.40	0.01	2.332	14.89	0.00	6.5	93.5	0.0	-0.79	1.23	0.67	0.78	—	8737	1097	7	0	1	0	0	logfile
✔	6DFG	7875	2024-09-28	2018-05-14	4.42	4.61	4.39	4.4	0.008	1.18	0.0	0.07	16.01	0.01	2.240	7.76	0.29	11.0	89.0	0.0	-4.24	0.79	0.81	—	4.4	0.003	0.79	0.0	0.05	11.42	0.00	2.373	10.96	0.00	8.8	91.1	0.1	-2.23	1.29	0.79	0.83	—	20190	2355	48	0	135	0	0	logfile
✔	6QVD	4649	2024-09-25	2019-03-01	4.34	5.50	4.28	6.0	0.010	1.81	8.0	0.10	12.96	0.01	2.193	12.88	3.61	9.6	90.1	0.3	-4.01	0.68	0.75	—	5.3	0.003	0.88	0.0	0.05	12.22	0.00	2.410	16.62	0.00	7.9	91.9	0.2	-0.39	1.39	0.63	0.57	—	9212	1192	2	0	0	0	0	logfile
✔	6JC3	9793	2024-09-23	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	16.29	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.003	0.70	0.0	0.04	14.57	0.00	2.547	9.94	0.00	4.9	95.1	0.0	0.86	4.20	0.43	0.81	—	3154	391	2	6	0	0	0	logfile

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