Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DVD	27735	2024-09-29	2022-07-28	4.12	4.71	4.34	4.3	0.007	1.07	0.0	0.07	24.44	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.005	0.92	0.0	0.05	13.11	0.01	2.389	11.38	0.00	8.4	91.5	0.1	-1.56	1.77	0.84	0.81	—	20804	2137	83	0	302	0	0	logfile
✔	7KEX	22842	2024-09-26	2020-10-13	4.25	4.92	—	4.4	0.022	1.88	0.0	0.12	14.86	0.01	2.018	1.45	0.22	3.0	96.4	0.6	0.58	0.61	0.74	—	4.4	0.005	0.79	0.0	0.04	12.36	0.00	2.344	15.01	0.00	6.2	93.6	0.2	-0.79	1.92	0.62	0.80	—	12909	1620	21	0	27	0	0	logfile
✔	8GAS	29905	2024-09-28	2023-02-23	4.04	4.60	4.12	4.3	0.004	0.68	0.0	0.05	19.30	0.00	2.069	5.80	0.09	4.8	95.1	0.1	-0.68	0.80	0.75	—	4.3	0.003	0.71	0.0	0.05	13.15	0.00	2.437	10.18	0.00	6.3	93.5	0.1	-0.81	1.30	0.82	0.80	—	20253	2430	39	0	93	0	0	logfile
✔	8TAR	41140	2024-09-25	2023-06-27	4.0	3.08	3.83	2.0	0.005	0.76	0.0	0.06	7.03	0.00	2.106	1.76	0.00	1.8	98.2	0.0	-1.85	0.74	0.68	—	2.6	0.005	0.79	0.0	0.04	5.33	0.00	2.041	7.07	0.00	14.9	85.1	0.0	-2.51	1.29	0.79	0.76	—	54010	8984	24	0	4	0	18053	logfile
✔	7MLV	23911	2024-09-27	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	15.50	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.004	0.81	0.0	0.05	12.36	0.00	2.518	17.06	0.00	8.6	91.4	0.0	-3.19	1.68	0.70	0.69	—	15055	1919	16	0	22	0	0	logfile
✔	6o1o	0454	2024-09-27	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	18.29	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	16.94	0.00	2.206	9.94	0.00	0.0	0.0	0.0	—	1.31	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile
✔	7Wi8	32527	2024-09-25	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.021	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.002	0.66	0.0	0.04	12.20	0.00	2.586	7.14	0.00	10.1	89.9	0.0	-2.79	1.53	0.68	0.76	—	9268	1446	4	0	4	0	0	logfile
✔	7JGJ	22328	2024-09-26	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.78	0.0	0.04	13.60	0.00	2.350	21.58	0.00	7.2	92.6	0.1	-2.20	1.26	0.84	0.50	—	13324	1707	3	0	0	0	0	logfile
✔	7VFP	31957	2024-09-25	2021-09-13	4.03	4.38	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	1.933	18.11	0.00	6.1	93.8	0.1	0.05	0.65	0.78	—	4.2	0.004	0.79	0.0	0.05	14.16	0.00	2.012	14.33	0.00	5.0	94.9	0.1	0.33	0.57	0.64	0.78	—	8857	1130	8	0	3	2	0	logfile
✔	6UDA	20735	2024-09-29	2019-09-19	4.2	4.81	—	4.4	0.017	1.89	3.0	0.22	11.96	0.01	2.004	2.10	0.34	2.4	97.1	0.5	0.89	0.71	0.65	—	4.4	0.003	0.70	0.0	0.04	12.71	0.00	2.345	8.66	0.00	4.6	95.3	0.1	-0.30	0.82	0.85	0.83	—	23733	3024	18	0	18	0	0	logfile
✔	7UiF	26544	2024-09-26	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.7	0.003	0.75	0.0	0.05	13.38	0.01	2.324	16.44	0.00	3.4	96.6	0.0	0.04	1.21	0.61	0.63	—	63137	7857	33	0	0	0	0	logfile
✔	6VQH	21350	2024-09-28	2020-02-05	4.4	4.72	—	4.6	0.008	1.00	0.0	0.07	11.13	0.00	2.336	5.47	2.06	2.6	97.2	0.2	0.63	0.64	0.67	—	4.6	0.004	0.78	0.0	0.04	12.31	0.00	2.309	16.82	0.00	3.1	96.9	0.0	2.05	0.99	0.67	0.73	—	19338	2813	18	0	0	0	0	logfile
✔	7YR6	34047	2024-09-23	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	26.03	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.004	0.78	0.0	0.04	25.96	0.00	2.356	29.40	0.00	23.6	76.4	0.0	-5.37	0.78	0.82	0.80	—	4248	220	5	118	0	0	0	logfile
✔	8E5L	27914	2024-09-28	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.89	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.003	0.71	0.0	0.04	12.53	0.00	0.980	15.84	0.00	3.3	96.7	0.0	0.48	1.31	0.88	0.82	—	20058	2502	13	9	18	0	0	logfile
✔	6Uo9	20823	2024-09-25	2019-10-14	4.8	5.30	—	4.9	0.006	1.38	1.0	0.07	14.28	0.01	2.227	6.41	1.07	8.0	92.0	0.0	-3.80	0.81	0.80	—	4.9	0.003	0.78	0.0	0.05	13.05	0.00	2.396	9.54	0.00	6.8	93.2	0.0	-0.05	1.07	0.81	0.81	—	9915	1365	9	0	14	0	0	logfile
✔	7UZY	26922	2024-09-27	2022-05-09	4.05	5.04	4.10	3.8	0.005	0.76	0.0	0.05	13.95	0.01	1.373	14.50	0.38	4.7	95.2	0.1	-0.62	0.77	0.63	—	3.8	0.003	0.66	0.0	0.04	15.34	0.00	2.339	13.44	0.00	3.4	96.6	0.0	-0.12	1.25	0.83	0.74	—	15332	1781	11	44	0	0	0	logfile
✔	7LVT	23542	2024-09-28	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.73	0.0	0.04	12.94	0.00	2.032	10.20	0.00	5.5	94.3	0.1	0.03	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	6UM5	20817	2024-09-28	2019-10-09	4.2	4.70	—	4.3	0.010	1.57	27.0	0.12	17.84	0.02	2.022	7.30	4.06	6.0	92.8	1.2	-1.89	0.69	0.66	—	4.2	0.005	0.87	0.0	0.05	13.49	0.00	2.347	12.82	0.00	9.1	90.7	0.2	-1.91	0.94	0.81	0.83	—	20562	2487	36	0	96	0	0	logfile
✔	7WTJ	32788	2024-09-23	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.1	0.004	0.71	0.0	0.05	14.08	0.00	2.480	9.14	0.00	11.0	89.0	0.0	-2.21	0.40	0.55	0.80	—	3261	424	3	0	0	0	0	logfile

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