Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CP7	7549	2024-09-24	2018-03-13	4.1	4.11	—	4.1	0.008	1.42	0.0	0.07	13.16	0.01	1.577	14.52	3.98	6.6	92.9	0.5	-4.99	0.50	0.68	—	4.1	0.004	0.96	0.0	0.05	12.53	0.00	2.461	17.19	0.00	4.1	95.9	0.0	-0.32	1.05	0.50	0.70	—	9164	1234	16	0	0	0	0	logfile
✔	7JGJ	22328	2024-09-26	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.78	0.0	0.04	13.60	0.00	2.350	21.58	0.00	7.2	92.6	0.1	-2.20	1.26	0.84	0.50	—	13324	1707	3	0	0	0	0	logfile
✔	6BX3	7303	2024-09-25	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.005	0.88	0.0	0.05	13.14	0.00	2.395	20.98	0.00	18.0	81.9	0.1	-3.50	1.36	0.74	0.73	—	10456	1413	7	0	0	0	0	logfile
✔	8E5P	27917	2024-09-28	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.51	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.002	0.66	0.0	0.04	12.32	0.00	1.507	11.63	0.00	2.2	97.8	0.0	1.02	1.57	0.86	0.78	—	20038	2502	13	8	18	0	0	logfile
✔	6VN0	21246	2024-09-28	2020-01-29	4.25	4.57	4.28	4.5	0.018	1.76	0.0	0.10	12.94	0.01	2.270	1.83	0.15	2.9	96.5	0.6	0.70	0.74	0.78	—	4.5	0.005	0.83	0.0	0.05	11.98	0.00	2.362	11.40	0.00	7.7	91.9	0.4	-0.71	1.83	0.74	0.81	—	19962	2364	51	0	105	0	0	logfile
✔	7Z8L	14556	2024-09-27	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	9.68	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.004	0.63	0.0	0.04	6.87	0.00	1.809	2.27	0.00	5.1	94.9	0.0	1.52	0.68	0.81	0.84	—	16513	3311	3	0	5	0	0	logfile
✔	7QTJ	14142	2024-09-25	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	15.20	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.003	0.68	0.0	0.05	13.19	0.00	2.448	7.62	0.00	4.8	95.0	0.2	-0.79	0.50	0.64	0.75	—	9942	1280	8	0	5	0	0	logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile
✔	6UoX	20834	2024-09-25	2019-10-15	4.02	4.28	—	4.1	0.010	1.18	1.0	0.08	14.59	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	4.1	0.003	0.72	0.0	0.04	12.15	0.00	2.415	6.53	0.00	5.9	94.1	0.0	-1.51	0.95	0.68	0.81	—	9138	1161	4	0	14	0	0	logfile
✔	7Wi8	32527	2024-09-25	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.021	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.002	0.66	0.0	0.04	12.20	0.00	2.586	7.14	0.00	10.1	89.9	0.0	-2.79	1.53	0.68	0.76	—	9268	1446	4	0	4	0	0	logfile
✔	6PWF	20507	2024-09-27	2019-07-22	4.07	4.13	—	4.1	0.009	1.01	0.0	0.06	26.98	0.01	2.066	6.15	0.11	9.8	90.2	0.0	-6.10	0.64	0.76	—	4.1	0.003	0.66	0.0	0.04	26.91	0.00	2.390	10.24	0.00	5.2	94.8	0.0	-2.55	1.15	0.64	0.75	—	15197	1208	11	292	0	0	0	logfile
✔	7LVT	23542	2024-09-28	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.73	0.0	0.04	12.94	0.00	2.032	10.20	0.00	5.5	94.3	0.1	0.03	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	7UiF	26544	2024-09-26	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.7	0.003	0.75	0.0	0.05	13.38	0.01	2.324	16.44	0.00	3.4	96.6	0.0	0.04	1.21	0.61	0.63	—	63137	7857	33	0	0	0	0	logfile
✔	7VFP	31957	2024-09-25	2021-09-13	4.03	4.38	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	1.933	18.11	0.00	6.1	93.8	0.1	0.05	0.65	0.78	—	4.2	0.004	0.79	0.0	0.05	14.16	0.00	2.012	14.33	0.00	5.0	94.9	0.1	0.33	0.57	0.64	0.78	—	8857	1130	8	0	3	2	0	logfile
✔	8DVD	27735	2024-09-29	2022-07-28	4.12	4.71	4.34	4.3	0.007	1.07	0.0	0.07	24.44	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.005	0.92	0.0	0.05	13.11	0.01	2.389	11.38	0.00	8.4	91.5	0.1	-1.56	1.77	0.84	0.81	—	20804	2137	83	0	302	0	0	logfile
✔	7KEX	22842	2024-09-26	2020-10-13	4.25	4.92	—	4.4	0.022	1.88	0.0	0.12	14.86	0.01	2.018	1.45	0.22	3.0	96.4	0.6	0.58	0.61	0.74	—	4.4	0.005	0.79	0.0	0.04	12.36	0.00	2.344	15.01	0.00	6.2	93.6	0.2	-0.79	1.92	0.62	0.80	—	12909	1620	21	0	27	0	0	logfile
✔	7Z8Q	14560	2024-09-29	2022-03-18	4.08	4.47	—	4.2	0.003	0.52	0.0	0.04	9.98	0.00	2.012	5.33	0.37	4.0	95.9	0.1	-0.46	0.78	0.70	—	4.2	0.006	0.79	0.0	0.05	12.71	0.01	1.973	12.25	0.00	5.5	94.5	0.0	-0.40	1.02	0.85	0.83	—	22485	2891	6	0	3	0	0	logfile
✔	7TW2	26148	2024-09-26	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.67	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.003	0.69	0.0	0.04	13.86	0.00	2.403	11.15	0.00	3.3	96.7	0.0	1.44	1.63	0.67	0.77	—	12838	1619	4	0	2	0	0	logfile
✔	7VHJ	31996	2024-09-30	2021-09-22	4.2	4.29	—	4.2	0.004	0.65	0.0	0.04	13.11	0.00	2.109	15.60	0.07	8.2	91.8	0.0	-3.85	0.76	0.79	—	4.2	0.004	0.66	0.0	0.04	13.44	0.00	2.394	11.52	0.00	6.6	93.4	0.0	-1.63	0.56	0.76	0.79	—	25353	3257	3	0	0	0	0	logfile
✔	5LDW	4040	2024-09-24	2016-06-28	4.27	4.38	4.19	4.3	0.009	1.42	20.0	1.11	14.78	0.01	1.608	6.24	3.32	8.5	88.2	3.3	-4.87	0.69	0.73	—	4.3	0.009	1.85	0.0	0.33	12.92	0.00	2.363	11.88	0.00	8.9	90.3	0.8	-1.56	0.94	0.71	0.77	—	51181	5866	60	0	1936	0	0	logfile

• ← previous
• Page 3 of 538
• next →