Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CL1	16709	2024-09-27	2023-02-16	3.35	3.67	2.87	3.6	0.008	0.93	0.0	0.06	12.18	0.01	0.393	14.11	0.54	0.0	99.1	0.9	-1.05	0.61	0.75	3.54	3.7	0.003	0.59	0.0	0.04	15.23	0.01	2.541	7.98	0.90	2.0	97.6	0.5	2.06	0.68	0.64	0.77	3.05	10494	1362	12	0	0	0	0	logfile
✔	6K9F	9948	2024-09-27	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.19	0.0	0.05	17.56	0.00	2.378	21.33	4.75	1.7	98.3	0.0	-0.24	3.84	0.68	0.84	0.41	8484	1044	12	0	0	0	0	logfile
✔	7UUQ	26800	2024-09-23	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.883	46.48	13.19	67.3	30.4	2.4	-10.55	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	6TUQ	10594	2024-09-27	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.69	0.0	0.04	12.36	0.00	2.645	9.32	0.44	0.0	100.0	0.0	-0.22	1.65	0.69	0.88	1.06	16100	2300	50	0	0	0	0	logfile
✔	7JSV	22460	2024-09-29	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	14.87	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.80	0.0	0.04	16.90	0.00	2.467	11.92	2.77	1.3	98.7	0.0	2.20	0.87	0.65	0.84	3.08	22140	2706	82	0	41	0	0	logfile
✔	8FF2	29036	2024-09-23	2022-12-07	2.87	2.65	2.28	3.2	0.005	0.43	0.0	0.04	10.64	0.00	2.540	4.96	0.00	0.0	100.0	0.0	-2.01	0.51	0.80	6.45	3.1	0.005	0.70	0.0	0.05	17.50	0.00	2.443	7.08	2.41	3.9	96.1	0.0	-2.83	2.42	0.52	0.82	6.11	5650	380	10	0	0	0	2740	logfile
✔	6oDJ	20021	2024-09-30	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.74	0.0	0.07	8.02	0.00	2.306	2.41	0.00	0.0	0.0	0.0	—	0.61	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	7RX4	24724	2024-09-26	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.004	0.57	0.0	0.04	16.57	0.00	2.577	4.75	3.97	0.0	100.0	0.0	5.73	0.46	0.62	0.81	0.94	13560	1740	60	0	0	0	0	logfile
✔	8CL4	16712	2024-09-28	2023-02-16	3.14	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.53	0.78	2.49	3.6	0.003	0.68	0.0	0.04	17.30	0.01	2.471	7.82	1.55	1.6	98.4	0.0	1.55	2.43	0.52	0.79	1.53	13335	1725	15	0	0	0	0	logfile
✔	8CKW	16704	2024-09-27	2023-02-16	3.12	3.53	3.07	3.4	0.005	0.87	0.0	0.08	12.55	0.01	0.523	4.81	0.00	0.0	100.0	0.0	-0.70	0.57	0.82	3.51	3.4	0.004	0.67	0.0	0.04	16.90	0.00	2.471	8.78	1.20	1.1	98.9	0.0	1.03	1.19	0.58	0.85	2.44	13890	1785	15	0	0	0	0	logfile
✔	7LQH	23486	2024-09-26	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.110	4.14	180.0	0.30	23.66	0.02	1.889	109.96	25.00	20.5	79.5	0.0	-5.87	3.62	0.65	0.87	3.05	12096	1152	144	0	0	0	0	logfile
✔	6X64	22069	2024-09-27	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.20	0.0	0.05	5.38	0.00	2.405	1.28	0.00	0.0	0.0	0.0	—	1.70	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	8TJQ	41308	2024-09-25	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.77	0.0	0.04	24.60	0.01	1.823	21.49	0.00	0.0	0.0	0.0	—	0.18	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	7ZXo	15012	2024-09-27	2022-05-21	2.5	2.89	2.54	2.7	0.003	0.52	0.0	0.04	15.39	0.01	2.030	2.71	1.36	0.0	100.0	0.0	4.19	0.72	0.88	3.47	2.7	0.003	0.48	0.0	0.04	16.19	0.00	2.641	3.09	0.94	1.1	98.9	0.0	4.13	0.62	0.64	0.91	3.17	17016	2124	12	0	0	0	0	logfile
✔	8oLQ	16961	2024-09-23	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.5	0.002	0.49	0.0	0.05	14.47	0.00	2.564	3.28	3.20	8.7	91.3	0.0	-2.19	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	8BFA	16018	2024-09-23	2022-10-24	3.0	3.05	3.02	3.3	0.002	0.39	0.0	0.05	13.94	0.00	2.592	6.46	0.00	0.0	100.0	0.0	-3.13	0.47	0.82	5.29	3.3	0.003	0.48	0.0	0.05	17.15	0.00	2.606	4.85	0.71	2.2	97.8	0.0	-2.39	1.32	0.51	0.88	6.16	2860	380	10	0	0	0	0	logfile
✔	7Q66	13853	2024-09-23	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.77	0.0	0.05	16.37	0.00	2.516	11.85	11.07	0.3	99.7	0.0	-4.14	0.68	0.62	0.88	4.12	4807	682	22	0	0	0	0	logfile
✔	8B3A	15824	2024-09-23	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	5.90	24.0	0.41	22.68	0.05	1.864	283.65	44.76	66.7	4.0	29.3	-10.74	2.50	0.40	0.52	2.89	2010	210	60	0	60	0	0	logfile
✔	8oQi	17111	2024-09-23	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.003	0.58	0.0	0.05	17.02	0.00	2.641	3.75	4.21	2.2	97.8	0.0	-1.72	1.22	0.52	0.87	4.11	3810	560	10	0	0	0	0	logfile

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