Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AZ6	15755	2024-09-23	2022-09-05	3.1	3.15	3.07	3.1	0.004	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.006	0.63	0.0	0.04	14.10	0.00	2.223	2.58	4.74	5.7	94.3	0.0	-4.92	0.78	0.51	0.87	6.66	3420	460	40	0	20	0	0	logfile
✔	7o4i	12719	2024-09-29	2021-04-06	3.2	3.14	3.22	3.2	0.002	0.48	0.0	0.04	14.70	0.00	1.885	4.69	0.03	2.4	97.6	0.0	1.16	0.77	0.78	2.18	3.2	0.004	0.62	0.0	0.04	17.13	0.00	1.958	6.95	1.42	3.0	97.0	0.0	0.77	0.67	0.79	0.83	2.17	73949	8892	43	134	22	0	0	logfile
✘	8FoZ	29357	2024-09-29	2023-01-03	2.0	2.03	2.09	2.0	0.009	0.92	0.0	0.06	15.79	0.01	2.238	2.94	1.31	0.5	99.5	0.0	0.22	0.80	0.91	7.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23648	3072	16	0	16	0	0	logfile
✔	6ESF	3947	2024-09-26	2017-10-20	3.7	3.94	—	3.9	0.008	0.97	0.0	0.05	28.71	0.01	2.249	4.96	0.94	4.4	95.6	0.0	-4.25	0.79	0.75	1.48	3.9	0.004	0.67	0.0	0.04	28.86	0.00	2.135	11.66	3.45	3.8	96.2	0.0	1.32	0.68	0.80	0.78	0.96	12091	762	10	294	0	0	0	logfile
✔	7U1Q	26303	2024-09-29	2022-02-21	3.9	4.05	—	4.0	0.003	0.58	0.0	0.04	19.08	0.00	2.228	6.87	0.00	6.6	93.4	0.0	-1.11	0.53	0.75	1.59	4.0	0.005	0.74	0.0	0.05	17.95	0.00	2.362	11.90	4.32	5.4	94.6	0.0	0.09	1.59	0.53	0.76	0.95	21013	2791	11	0	25	0	0	logfile
✔	7QEW	13943	2024-09-25	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.69	0.0	0.04	14.49	0.00	2.556	5.30	1.59	3.1	96.9	0.0	3.03	1.06	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	6N27	9325	2024-09-26	2018-11-12	3.0	3.04	—	3.0	0.007	0.88	0.0	0.05	9.61	0.01	2.305	3.26	0.00	1.8	98.2	0.0	-2.91	0.72	0.86	4.69	3.0	0.004	0.56	0.0	0.04	14.74	0.00	2.297	4.02	1.97	2.0	98.0	0.0	0.94	1.19	0.76	0.89	3.77	13930	1695	10	0	5	0	0	logfile
✔	7X90	33062	2024-09-24	2022-03-15	4.2	4.77	4.13	4.4	0.003	0.58	0.0	0.04	13.96	0.00	2.191	10.21	0.00	11.8	88.2	0.0	-3.08	0.77	0.73	—	4.4	0.002	0.56	0.0	0.04	13.47	0.00	2.360	8.04	0.00	9.7	90.1	0.2	-2.69	1.43	0.75	0.75	—	6441	420	4	0	2	0	3140	logfile
✔	6KLo	0713	2024-09-29	2019-07-30	2.8	3.01	—	2.9	0.005	0.60	0.0	0.05	13.06	0.00	2.185	5.62	0.12	5.9	94.1	0.0	-3.14	0.77	0.87	4.15	2.9	0.003	0.56	0.0	0.05	15.83	0.00	2.133	4.47	1.46	5.7	94.3	0.0	-0.78	0.39	0.75	0.88	3.70	23275	2972	15	0	14	0	0	logfile
✔	7Wo7	32641	2024-09-23	2022-01-20	3.8	3.99	—	3.9	0.003	0.71	0.0	0.04	11.24	0.00	2.163	6.93	8.82	9.7	90.3	0.0	-4.70	0.72	0.74	1.98	3.9	0.004	0.75	0.0	0.05	15.36	0.01	2.500	11.96	3.68	15.3	84.7	0.0	-3.25	1.79	0.74	0.76	2.16	4870	634	4	0	1	0	0	logfile
✔	6Z2J	11041	2024-09-28	2020-05-16	4.0	4.25	3.91	4.2	0.005	0.83	0.0	0.27	16.35	0.00	1.987	3.28	0.39	7.9	92.1	0.0	-3.35	0.69	0.63	—	4.2	0.003	0.66	0.0	0.04	17.32	0.00	1.914	8.26	1.08	8.7	91.3	0.0	-1.86	1.88	0.70	0.67	—	18876	1185	8	0	8	0	9273	logfile
✔	6N25	9323	2024-09-26	2018-11-12	2.7	3.35	—	3.2	0.008	0.85	0.0	0.05	9.28	0.01	2.044	2.16	0.00	2.1	97.9	0.0	-6.12	0.77	0.88	4.62	3.2	0.004	0.59	0.0	0.04	14.62	0.00	2.340	3.78	1.63	2.1	97.9	0.0	1.04	3.81	0.67	0.84	3.27	13940	1690	10	0	5	0	0	logfile
✔	7X95	33067	2024-09-24	2022-03-15	3.9	4.89	3.86	4.3	0.003	0.50	0.0	0.04	13.80	0.00	1.979	7.18	0.00	6.4	93.6	0.0	-1.00	0.79	0.71	3.07	4.3	0.004	0.65	0.0	0.04	13.70	0.00	2.396	11.00	0.00	7.8	92.2	0.0	-1.29	0.89	0.81	0.78	2.76	6522	427	4	0	2	0	3176	logfile
✔	7WoC	32648	2024-09-23	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.58	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.004	0.73	0.0	0.05	15.16	0.00	2.491	9.10	4.21	10.3	89.7	0.0	-3.07	2.06	0.75	0.84	2.61	4746	610	4	0	1	0	0	logfile
✔	6N23	9321	2024-09-26	2018-11-12	3.1	3.91	—	3.6	0.008	0.78	0.0	0.05	9.58	0.01	2.040	2.43	0.00	3.3	96.7	0.0	-5.52	0.79	0.87	4.09	3.6	0.002	0.56	0.0	0.04	12.47	0.00	2.377	3.81	0.98	2.0	98.0	0.0	2.05	2.23	0.73	0.85	2.90	14935	1815	10	0	5	0	0	logfile
✔	6PLP	20371	2024-09-26	2019-07-01	3.3	3.51	—	3.8	0.002	0.53	0.0	0.05	11.13	0.00	2.031	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.7	0.003	0.66	0.0	0.04	13.15	0.00	2.537	8.10	2.71	2.9	97.1	0.0	-0.79	2.00	0.50	0.79	2.87	14240	1730	15	0	20	0	0	logfile
✔	7ZK3	14753	2024-09-26	2022-04-12	2.85	3.10	2.81	3.0	0.003	0.58	0.0	0.04	13.32	0.00	2.029	14.60	1.09	4.7	95.3	0.0	1.70	0.78	0.82	2.96	3.0	0.004	0.67	0.0	0.04	15.66	0.00	2.267	6.10	1.87	5.2	94.8	0.0	1.21	0.63	0.74	0.83	3.16	11898	1442	4	0	8	0	0	logfile
✔	7PX8	13691	2024-09-29	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.53	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.51	0.0	0.04	13.55	0.00	2.580	3.43	0.72	2.5	97.5	0.0	-0.01	0.19	0.80	0.88	3.34	21409	2798	4	0	0	0	0	logfile
✔	6N26	9324	2024-09-26	2018-11-12	3.0	3.29	—	3.2	0.008	0.83	0.0	0.05	9.20	0.01	2.048	2.55	0.00	3.2	96.8	0.0	-6.12	0.72	0.83	4.16	3.2	0.003	0.65	0.0	0.04	15.63	0.00	2.516	5.97	1.31	1.2	98.8	0.0	0.78	0.67	0.73	0.85	2.72	13190	1595	5	0	0	0	0	logfile
✔	6FQ6	4298	2024-09-26	2018-02-13	4.0	4.69	—	4.1	0.009	1.10	0.0	0.07	26.70	0.01	2.261	7.97	0.32	2.3	97.7	0.0	-0.84	0.84	0.73	—	4.0	0.005	0.78	0.0	0.04	29.24	0.01	2.008	22.43	3.67	3.4	96.6	0.0	-0.40	0.97	0.85	0.76	—	11987	752	10	294	0	0	0	logfile

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