Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DTW	30856	2024-09-25	2021-01-06	4.5	4.74	—	3.6	0.008	1.01	0.0	0.06	13.83	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.61	0.0	0.04	12.47	0.00	2.030	6.44	0.00	7.8	92.2	0.0	-1.18	0.59	0.72	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	7Yi1	33848	2024-09-26	2022-07-14	2.8	2.41	2.78	2.6	0.003	0.57	0.0	0.03	26.98	0.00	2.155	7.30	0.37	1.9	98.1	0.0	0.11	0.81	0.84	2.94	2.6	0.004	0.58	0.0	0.04	27.65	0.00	2.149	6.23	2.35	1.8	98.2	0.0	1.74	0.23	0.81	0.86	2.72	13926	967	12	302	0	0	0	logfile
✔	7XYF	33520	2024-09-27	2022-06-01	4.3	4.47	3.32	4.3	0.008	0.93	0.0	0.05	27.11	0.01	2.217	13.45	2.14	4.9	95.1	0.0	-4.98	0.87	0.81	—	4.3	0.004	0.69	0.0	0.04	25.75	0.00	2.021	16.11	0.00	4.1	95.9	0.0	-0.20	1.33	0.87	0.81	—	17321	1418	11	292	0	0	0	logfile
✔	6X3Z	22037	2024-09-27	2020-05-21	3.23	3.43	3.26	3.4	0.007	1.09	2.0	0.14	14.39	0.01	2.232	5.50	0.69	4.2	95.8	0.0	-2.07	0.71	0.85	3.87	3.4	0.003	0.64	0.0	0.04	15.28	0.00	2.552	8.51	2.66	2.9	97.1	0.0	0.16	1.26	0.69	0.87	3.41	17365	2121	16	0	23	0	0	logfile
✔	7W4A	32299	2024-09-26	2021-11-26	2.76	2.16	2.69	2.2	0.006	0.71	0.0	0.04	13.80	0.00	2.048	7.08	0.09	2.3	97.7	0.0	1.29	0.63	0.77	3.24	2.2	0.003	0.55	0.0	0.04	15.70	0.00	2.031	6.31	1.42	2.9	97.1	0.0	1.69	0.39	0.62	0.79	3.39	9855	1245	5	0	7	12	0	logfile
✔	6SPE	10283	2024-09-24	2019-09-01	3.6	3.80	—	3.6	0.007	0.85	0.0	0.04	22.60	0.01	2.277	3.97	0.10	8.4	91.6	0.0	-4.99	0.88	0.84	2.15	3.6	0.004	0.66	0.0	0.04	22.71	0.00	2.272	7.98	3.87	6.9	93.1	0.0	-1.56	1.29	0.88	0.84	1.28	51429	2392	21	1526	0	0	0	logfile
✔	7U1S	26304	2024-09-29	2022-02-22	3.8	3.89	—	3.9	0.003	0.54	0.0	0.04	18.59	0.00	2.253	6.13	0.10	5.6	94.4	0.0	-0.53	0.53	0.75	2.13	3.9	0.006	0.91	5.0	0.05	18.03	0.01	2.138	12.95	5.99	5.7	94.3	0.0	-0.23	0.62	0.55	0.77	1.39	21225	2792	11	0	26	0	0	logfile
✔	6TAU	10428	2024-09-24	2019-10-30	3.7	2.83	—	3.7	0.006	0.99	0.0	0.06	15.44	0.01	1.283	13.22	0.23	6.5	93.5	0.0	-4.23	0.55	0.75	1.32	3.0	0.003	0.61	0.0	0.04	17.66	0.00	2.510	4.39	1.80	3.9	96.1	0.0	0.73	0.64	0.56	0.75	1.29	8148	984	6	0	0	0	0	logfile
✔	7DTU	30854	2024-09-25	2021-01-06	4.4	4.54	—	3.7	0.006	0.90	0.0	0.06	14.69	0.01	2.277	6.85	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.003	0.65	0.0	0.04	13.07	0.00	2.549	9.42	0.00	7.9	92.1	0.0	-0.85	1.10	0.68	0.80	—	10846	1558	10	0	14	0	0	logfile
✔	7PLS	13499	2024-09-26	2021-09-01	2.49	2.49	—	2.6	0.003	0.58	0.0	0.05	16.35	0.00	2.039	4.66	1.33	5.6	94.4	0.0	0.35	0.74	0.86	5.65	2.6	0.002	0.53	0.0	0.04	16.24	0.00	2.590	3.75	0.67	5.4	94.6	0.0	0.44	0.95	0.76	0.88	5.18	14224	1724	12	0	4	52	0	logfile
✔	7EG6	31106	2024-09-26	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.43	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.004	0.56	0.0	0.03	27.86	0.00	2.508	5.65	0.31	1.6	98.4	0.0	3.28	0.43	0.89	0.89	2.54	12118	779	11	292	0	0	0	logfile
✔	6X3W	22035	2024-09-27	2020-05-21	3.3	3.32	3.16	3.3	0.008	1.16	1.0	0.08	14.58	0.01	2.211	5.55	0.85	4.3	95.7	0.0	-2.06	0.73	0.86	3.98	3.3	0.004	0.81	0.0	0.04	15.37	0.00	1.846	8.69	3.19	3.0	97.0	0.0	0.07	0.47	0.74	0.89	3.48	17399	2121	17	0	25	0	0	logfile
✔	7Si6	25138	2024-09-26	2021-10-12	3.32	3.28	—	3.3	0.003	1.22	0.0	0.04	13.58	0.00	2.044	4.51	0.00	1.4	98.6	0.0	2.88	0.46	0.77	1.67	3.3	0.002	0.85	0.0	0.04	15.00	0.00	1.922	3.03	0.69	2.3	97.7	0.0	2.65	0.41	0.50	0.82	1.77	13515	873	2	0	2	0	6910	logfile
✔	7NJM	12387	2024-09-29	2021-02-17	2.84	2.63	—	2.7	0.003	0.50	0.0	0.04	15.19	0.00	1.935	6.68	0.00	2.7	97.3	0.0	1.41	0.85	0.86	3.49	2.7	0.004	0.66	1.0	0.04	16.55	0.00	1.779	5.42	0.60	2.2	97.8	0.0	1.86	0.91	0.86	0.88	3.26	74611	4932	31	0	11	16	37328	logfile
✔	7Q3H	13792	2024-09-29	2021-10-27	3.2	3.00	3.19	3.2	0.004	0.57	0.0	0.04	14.16	0.00	2.195	9.02	0.00	5.6	94.4	0.0	-0.67	0.74	0.84	3.36	3.2	0.003	0.58	0.0	0.04	16.14	0.00	2.538	6.90	2.00	5.6	94.4	0.0	-0.57	0.55	0.65	0.84	3.29	21620	2795	5	0	0	0	0	logfile
✔	7WUG	32830	2024-09-27	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.50	0.0	0.04	15.03	0.00	2.523	4.03	0.97	3.1	96.9	0.0	1.49	0.29	0.79	0.88	2.01	17515	2239	5	0	0	0	0	logfile
✔	6J9E	9785	2024-09-30	2019-01-22	3.41	3.55	3.48	3.5	0.003	0.61	0.0	0.04	14.74	0.01	2.198	2.44	0.05	3.0	97.0	0.0	-3.74	0.76	0.79	1.49	3.5	0.002	0.59	0.0	0.04	16.98	0.00	2.132	4.78	2.35	2.9	97.1	0.0	0.22	0.61	0.79	0.83	1.55	24427	3203	11	63	3	0	0	logfile
✔	6XJB	22205	2024-09-25	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.66	0.0	0.04	15.43	0.00	2.491	10.66	3.43	7.5	92.5	0.0	-1.48	1.82	0.88	0.86	1.89	10070	1277	1	0	0	0	0	logfile
✔	6B70	7062	2024-09-29	2017-10-03	3.7	4.28	4.09	4.1	0.011	1.26	0.0	0.07	11.30	0.01	2.192	6.22	0.00	4.0	96.0	0.0	-3.94	0.89	0.80	2.01	4.1	0.004	0.74	0.0	0.04	14.43	0.00	2.457	10.21	1.35	5.8	94.2	0.0	-0.48	0.77	0.89	0.81	1.42	22192	2783	8	0	0	0	0	logfile
✔	7R89	24312	2024-09-25	2021-06-26	2.6	2.92	—	2.9	0.002	0.56	0.0	0.04	14.78	0.00	2.221	7.92	3.39	3.8	96.2	0.0	-1.46	0.71	0.86	3.40	2.8	0.004	0.90	1.0	0.04	15.95	0.00	1.670	5.19	2.95	4.7	95.3	0.0	0.96	1.27	0.72	0.90	3.66	10531	1332	5	0	1	0	0	logfile

• ← previous
• Page 2 of 538
• next →