Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DW6	27751	2024-09-29	2022-07-31	3.5	2.65	3.48	3.2	0.004	0.65	0.0	0.05	12.25	0.00	1.856	11.91	2.26	5.1	94.9	0.0	0.45	0.55	0.61	1.11	2.6	0.005	0.74	0.0	0.05	17.17	0.00	1.851	14.12	2.54	6.7	93.3	0.0	-0.44	1.49	0.57	0.66	1.55	23694	2914	15	17	11	0	0	logfile
✔	8BLQ	16113	2024-09-25	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.003	0.65	0.0	0.04	14.19	0.00	2.563	14.36	1.56	6.1	93.9	0.0	-1.83	1.43	0.94	0.80	1.25	9210	1220	5	0	0	0	0	logfile
✔	8i10	35115	2024-09-26	2023-01-12	3.96	4.21	4.00	4.2	0.006	0.95	0.0	0.06	13.99	0.01	2.172	8.83	0.58	6.4	93.6	0.0	-1.07	0.76	0.78	2.85	4.2	0.004	0.70	0.0	0.04	14.77	0.00	2.398	7.56	3.90	5.8	94.2	0.0	-0.25	0.52	0.78	0.80	2.09	13196	1729	12	0	0	0	0	logfile
✔	8CUJ	27001	2024-09-23	2022-05-17	3.04	2.55	3.04	3.2	0.002	0.53	0.0	0.04	14.73	0.00	2.276	5.90	0.00	2.1	97.9	0.0	1.48	0.44	0.80	0.86	3.1	0.003	0.55	0.0	0.04	15.75	0.00	2.627	5.46	3.60	2.1	97.9	0.0	1.57	0.89	0.44	0.80	1.70	3293	433	2	0	0	1	0	logfile
✔	8T6J	41069	2024-09-26	2023-06-16	3.5	3.65	—	3.5	0.003	0.56	0.0	0.04	13.81	0.00	2.196	6.10	0.00	5.1	94.9	0.0	0.00	0.80	0.79	1.76	3.5	0.003	0.83	1.0	0.04	15.79	0.00	2.515	5.53	2.73	5.3	94.7	0.0	0.16	0.33	0.80	0.79	1.85	11652	1534	4	0	2	0	0	logfile
✔	8H9G	34566	2024-09-23	2022-10-25	2.95	3.31	3.17	3.3	0.008	0.77	0.0	0.05	14.93	0.01	2.278	10.74	0.00	5.8	94.2	0.0	-2.39	0.34	0.81	2.01	3.3	0.003	0.64	0.0	0.04	17.78	0.00	2.572	5.97	4.23	4.1	95.9	0.0	2.18	0.90	0.33	0.81	1.93	3381	421	3	0	0	0	0	logfile
✔	8SCX	40346	2024-09-24	2023-04-05	2.7	3.26	2.76	3.1	0.006	0.70	0.0	0.04	14.97	0.00	2.240	5.56	0.18	1.9	98.1	0.0	1.27	0.69	0.85	4.05	3.1	0.003	0.57	0.0	0.04	16.53	0.00	2.398	5.30	1.97	2.1	97.9	0.0	2.51	0.42	0.64	0.83	3.12	5753	760	7	0	2	0	0	logfile
✔	8C7G	16457	2024-09-25	2023-01-15	3.2	2.28	—	2.1	0.004	0.63	0.0	0.05	13.28	0.00	2.111	4.10	0.00	3.4	96.6	0.0	0.11	0.76	0.74	3.44	2.2	0.002	0.51	0.0	0.04	15.36	0.00	2.579	3.71	1.16	2.1	97.9	0.0	0.78	0.30	0.77	0.75	2.76	11525	1429	3	0	0	0	0	logfile
✔	8FTE	29424	2024-09-27	2023-01-12	3.8	3.91	3.67	3.8	0.003	0.63	0.0	0.04	12.35	0.00	2.203	12.31	5.56	3.4	96.6	0.0	0.06	0.48	0.50	0.06	3.8	0.003	0.76	0.0	0.04	14.75	0.00	2.519	6.50	5.49	5.2	94.8	0.0	1.67	1.58	0.56	0.57	0.68	14564	2046	22	0	0	0	0	logfile
✔	8EoR	28465	2024-09-26	2022-10-04	2.67	2.82	2.67	2.9	0.004	0.64	0.0	0.04	13.33	0.00	2.303	2.64	0.45	2.2	97.8	0.0	0.50	0.60	0.75	4.68	2.9	0.002	0.56	0.0	0.04	14.84	0.00	2.576	3.59	1.57	2.3	97.7	0.0	0.72	0.45	0.73	0.85	3.86	12522	1596	9	0	12	0	0	logfile
✔	8FZ5	29603	2024-09-23	2023-01-27	2.23	2.37	2.30	2.4	0.005	0.60	0.0	0.05	14.80	0.01	2.247	4.31	0.19	1.4	98.6	0.0	1.51	0.81	0.91	5.22	2.4	0.003	0.55	0.0	0.04	16.72	0.00	2.463	4.43	1.68	1.3	98.7	0.0	1.84	1.71	0.82	0.91	4.90	48892	6280	28	0	0	0	0	logfile
✔	8CV2	27006	2024-09-25	2022-05-17	2.44	2.61	2.44	2.8	0.003	0.53	0.0	0.04	14.13	0.00	2.281	3.79	0.00	1.6	98.4	0.0	1.88	0.64	0.85	1.65	2.8	0.003	0.53	0.0	0.04	15.00	0.00	2.238	4.08	1.75	0.8	99.2	0.0	2.92	0.23	0.61	0.84	1.64	9882	1299	6	0	6	0	0	logfile
✔	8i9E	35268	2024-09-24	2023-02-06	3.2	3.50	3.01	3.5	0.008	0.74	0.0	0.05	16.27	0.00	2.266	4.96	4.76	9.7	90.3	0.0	-3.37	0.59	0.83	2.70	3.5	0.002	0.58	0.0	0.04	16.36	0.00	2.530	2.88	2.23	4.9	95.1	0.0	-0.22	0.33	0.57	0.82	2.33	6421	764	9	0	13	0	0	logfile
✔	8SGL	40461	2024-09-27	2023-04-12	2.9	3.44	2.97	3.2	0.005	0.55	0.0	0.04	14.21	0.00	1.932	6.95	0.00	3.5	96.5	0.0	1.62	0.84	0.89	2.74	3.2	0.003	0.57	0.0	0.04	15.58	0.00	1.627	6.08	0.77	3.2	96.8	0.0	1.76	0.25	0.83	0.88	2.34	67432	8762	49	0	48	19	0	logfile
✔	8JY7	36722	2024-09-24	2023-07-03	3.2	2.66	3.25	2.9	0.003	0.60	0.0	0.04	12.18	0.00	2.340	8.29	0.00	3.6	96.4	0.0	1.38	0.60	0.76	2.13	2.9	0.003	0.58	0.0	0.04	14.06	0.00	2.570	7.06	2.20	5.2	94.8	0.0	1.25	1.56	0.65	0.81	2.04	7292	968	4	0	0	0	0	logfile
✔	8G01	29641	2024-09-28	2023-01-31	3.4	2.36	3.52	2.8	0.002	0.44	0.0	0.04	11.41	0.00	2.029	3.31	0.00	1.0	99.0	0.0	2.02	0.68	0.71	1.84	2.8	0.003	0.57	0.0	0.04	15.52	0.00	2.389	7.99	2.52	2.0	98.0	0.0	0.99	0.82	0.71	0.76	2.03	18152	1148	6	0	0	0	9214	logfile
✔	8SN6	40614	2024-09-26	2023-04-26	3.7	3.89	3.71	3.8	0.004	0.57	0.0	0.03	25.93	0.00	1.329	7.45	0.11	2.5	97.5	0.0	1.99	0.85	0.86	1.06	3.8	0.004	0.65	0.0	0.04	26.28	0.00	2.111	8.27	1.84	3.0	97.0	0.0	2.03	1.39	0.84	0.85	0.68	14600	1076	14	294	2	0	0	logfile
✔	8SN8	40616	2024-09-26	2023-04-26	3.7	3.84	3.67	3.7	0.003	0.54	0.0	0.03	25.62	0.00	1.331	8.31	0.00	2.1	97.9	0.0	2.06	0.84	0.86	0.82	3.7	0.004	0.62	0.0	0.04	26.53	0.00	2.094	7.38	3.03	3.2	96.8	0.0	1.75	0.35	0.83	0.85	0.80	14600	1076	14	294	2	0	0	logfile
✔	8GB0	29910	2024-09-29	2023-02-24	4.1	4.11	3.94	3.6	0.005	0.97	0.0	0.05	11.94	0.01	2.282	4.48	0.04	3.4	96.6	0.0	-1.93	0.79	0.74	—	3.6	0.003	0.58	0.0	0.04	11.87	0.00	2.410	8.38	0.00	3.5	96.5	0.0	0.01	1.10	0.79	0.74	—	21566	2878	3	0	0	0	0	logfile
✔	8FS6	29415	2024-09-29	2023-01-09	2.9	3.17	3.02	3.2	0.004	0.68	0.0	0.05	18.46	0.00	2.045	8.16	2.53	3.6	96.4	0.0	-0.78	0.62	0.81	2.33	3.2	0.003	0.57	0.0	0.04	18.73	0.00	1.907	7.60	3.75	3.4	96.6	0.0	0.37	0.92	0.64	0.84	2.37	22246	2621	16	58	9	0	0	logfile

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