Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GS3	34219	2024-09-27	2022-09-04	3.9	3.16	3.68	3.0	0.013	1.32	0.0	0.05	15.90	0.01	1.810	20.53	0.00	3.5	96.5	0.0	0.27	0.83	0.75	1.57	3.0	0.013	1.32	0.0	0.05	15.94	0.01	1.812	21.50	0.11	3.5	96.5	0.0	0.27	0.05	0.83	0.76	1.57	8376	1067	2	0	0	0	0	logfile
✔	7RRP	24665	2024-09-28	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.003	0.57	0.0	0.04	14.38	0.00	2.069	1.76	0.91	2.4	97.6	0.0	4.27	0.07	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	7R6L	24281	2024-09-24	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.57	0.01	1.906	6.18	0.00	0.0	0.0	0.0	—	0.10	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7PM4	13520	2024-09-26	2021-09-01	2.49	2.26	—	2.5	0.003	0.56	0.0	0.04	16.86	0.00	2.033	4.75	1.06	4.9	95.1	0.0	0.76	0.79	0.88	5.85	2.5	0.003	0.56	0.0	0.04	16.66	0.00	2.543	3.55	1.53	5.5	94.5	0.0	0.60	0.12	0.80	0.90	5.86	14288	1724	12	0	8	60	0	logfile
✔	7T2E	25611	2024-09-23	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.19	0.00	2.592	1.92	1.57	0.3	99.7	0.0	0.56	0.13	0.36	0.86	4.71	2390	312	2	0	0	0	0	logfile
✔	8Ho8	34922	2024-09-26	2022-12-09	2.24	2.63	2.22	2.6	0.003	0.59	0.0	0.05	17.23	0.00	2.278	2.79	1.30	3.3	96.7	0.0	0.44	0.73	0.89	5.92	2.5	0.003	0.58	0.0	0.05	17.29	0.00	2.531	2.33	1.95	3.5	96.5	0.0	0.54	0.15	0.77	0.90	5.66	13454	1618	6	0	4	309	0	logfile
✔	8C54	16433	2024-09-26	2023-01-06	2.52	2.38	2.49	2.5	0.004	0.56	0.0	0.04	18.81	0.00	2.233	6.25	3.43	2.2	97.8	0.0	0.62	0.72	0.84	4.48	2.5	0.003	0.51	0.0	0.04	17.15	0.00	2.551	5.12	2.26	2.1	97.9	0.0	0.98	0.15	0.72	0.84	4.92	14266	1928	12	0	4	330	0	logfile
✔	8HNU	34918	2024-09-27	2022-12-08	2.28	2.97	2.29	2.7	0.003	0.45	0.0	0.04	16.20	0.00	2.170	3.11	1.52	2.0	97.9	0.1	1.07	0.85	0.90	4.54	2.7	0.004	0.91	2.0	0.04	16.20	0.00	2.142	2.41	0.58	2.2	97.7	0.1	0.91	0.16	0.85	0.91	4.82	16178	1970	6	0	4	316	0	logfile
✔	8HoB	34924	2024-09-26	2022-12-09	2.19	2.69	2.23	2.6	0.008	0.75	4.0	0.07	17.24	0.00	2.230	3.31	1.23	3.1	96.9	0.0	0.68	0.66	0.85	5.42	2.6	0.003	0.52	0.0	0.05	17.29	0.00	2.561	2.96	1.08	3.0	97.0	0.0	0.78	0.16	0.73	0.89	5.59	13449	1622	4	0	0	333	0	logfile
✔	8Y2C	38850	2024-09-23	2024-01-25	3.16	3.42	3.25	3.5	0.003	0.51	0.0	0.04	19.03	0.00	2.160	5.35	0.00	4.2	95.8	0.0	0.76	0.55	0.83	1.39	3.5	0.002	0.48	0.0	0.04	17.73	0.00	2.626	3.45	4.28	3.6	96.4	0.0	1.17	0.17	0.55	0.83	0.89	4207	529	2	0	2	0	0	logfile
✔	8G6G	29767	2024-09-26	2023-02-15	2.93	3.16	2.92	3.1	0.003	0.57	0.0	0.04	28.34	0.00	2.238	4.36	1.16	2.1	97.9	0.0	2.83	0.86	0.86	2.41	3.1	0.005	0.59	0.0	0.04	28.23	0.00	2.203	4.10	2.03	1.6	98.4	0.0	2.79	0.17	0.88	0.89	2.44	12985	825	11	314	0	0	0	logfile
✔	8TKC	41346	2024-09-28	2023-07-25	3.1	3.33	3.13	3.3	0.011	0.95	1.0	0.05	16.99	0.00	2.134	1.57	0.33	2.6	97.3	0.1	0.00	0.66	0.85	2.69	3.3	0.009	0.94	2.0	0.05	16.51	0.01	2.356	1.85	1.32	3.4	96.5	0.1	-0.15	0.17	0.68	0.88	2.97	20064	2421	45	0	87	0	0	logfile
✔	7R6M	24282	2024-09-24	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.53	0.01	1.758	13.47	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	8SMY	40606	2024-09-28	2023-04-26	3.2	3.41	3.24	3.4	0.003	0.54	0.0	0.03	26.40	0.01	1.330	5.54	0.00	1.9	98.1	0.0	1.40	0.73	0.85	3.28	3.4	0.003	0.56	0.0	0.04	26.72	0.00	2.194	3.44	1.99	2.8	97.2	0.0	1.46	0.18	0.73	0.86	2.85	13998	1000	13	294	2	0	0	logfile
✔	8EPX	28534	2024-09-27	2022-10-06	3.15	3.30	3.06	3.2	0.004	0.58	0.0	0.04	24.05	0.00	1.297	7.63	4.99	5.1	94.9	0.0	-0.23	0.79	0.84	0.94	3.2	0.003	0.73	0.0	0.04	23.79	0.00	2.337	5.83	4.01	5.4	94.6	0.0	0.24	0.18	0.79	0.84	1.17	15457	1672	14	144	2	0	0	logfile
✔	8EKL	28206	2024-09-28	2022-09-21	3.06	3.28	3.26	3.3	0.003	0.47	0.0	0.04	18.45	0.00	2.117	5.10	0.18	3.4	96.6	0.0	-0.87	0.72	0.90	4.06	3.3	0.004	0.54	0.0	0.04	18.63	0.00	2.168	3.51	4.01	3.9	96.1	0.0	-0.85	0.18	0.71	0.90	4.12	19334	2485	14	0	14	0	0	logfile
✔	8iQ4	35657	2024-09-24	2023-03-15	2.7	3.02	2.81	3.1	0.003	0.60	0.0	0.04	14.91	0.00	2.218	5.45	0.58	4.0	96.0	0.0	1.43	0.69	0.83	4.47	3.1	0.003	0.52	0.0	0.04	15.47	0.00	2.491	4.07	2.47	4.6	95.4	0.0	1.41	0.18	0.68	0.83	4.59	7080	954	6	0	1	0	0	logfile
✔	8TZB	41753	2024-09-24	2023-08-26	3.1	2.37	—	3.2	0.006	0.65	0.0	0.04	14.68	0.01	2.177	10.41	0.30	5.7	94.1	0.1	-0.33	0.76	0.73	2.27	3.2	0.003	0.57	0.0	0.04	15.09	0.00	2.417	8.54	2.25	4.9	95.0	0.1	-0.25	0.18	0.75	0.72	2.15	7283	1012	3	0	1	0	0	logfile
✔	8EHG	28147	2024-09-25	2022-09-14	2.24	2.24	2.25	2.3	0.003	0.53	0.0	0.04	16.09	0.00	2.291	4.70	1.44	1.5	98.5	0.0	1.13	0.74	0.83	5.20	2.3	0.003	0.54	0.0	0.04	16.95	0.00	2.607	4.32	2.16	1.2	98.8	0.0	1.79	0.18	0.72	0.84	5.57	10472	1372	4	0	0	0	0	logfile
✔	8SMX	40605	2024-09-28	2023-04-26	3.2	3.37	3.21	3.3	0.003	0.57	0.0	0.04	26.38	0.00	1.330	4.49	0.00	1.9	98.1	0.0	1.43	0.74	0.85	2.99	3.3	0.004	0.58	0.0	0.04	26.66	0.00	2.150	4.02	0.93	2.2	97.8	0.0	1.50	0.18	0.73	0.87	2.81	13998	1000	13	294	2	0	0	logfile

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