Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TZL	41762	2024-09-28	2023-08-27	3.55	3.98	3.46	3.8	0.004	0.51	0.0	0.04	10.72	0.00	1.922	2.28	0.00	2.5	97.5	0.0	3.76	0.71	0.78	1.99	3.8	0.003	0.54	0.0	0.04	13.84	0.00	2.038	4.82	1.57	3.1	96.9	0.0	3.20	0.70	0.71	0.79	2.17	18875	1398	7	0	4	0	9042	logfile
✔	8TP9	41470	2024-09-27	2023-08-04	3.1	3.33	3.17	3.4	0.020	1.82	7.0	0.11	10.91	0.01	2.334	2.44	0.00	1.9	98.1	0.0	0.64	0.71	0.76	3.47	3.4	0.004	0.70	0.0	0.04	15.15	0.00	2.542	8.35	2.20	4.1	95.9	0.0	-0.76	1.81	0.71	0.80	3.42	17118	2142	15	0	15	0	0	logfile
✔	8Q8E	18252	2024-09-24	2023-08-18	3.81	3.69	3.74	3.9	0.012	2.01	6.0	0.11	11.64	0.01	1.524	5.19	0.00	9.0	91.0	0.0	-2.95	0.28	0.52	2.07	4.0	0.006	0.95	0.0	0.06	15.07	0.01	2.382	11.24	4.74	10.5	89.5	0.0	-3.41	1.88	0.36	0.80	3.35	6810	894	12	0	0	0	0	logfile
✔	8SYM	40884	2024-09-23	2023-05-25	3.2	2.36	3.28	1.9	0.004	0.54	0.0	0.04	13.67	0.00	2.253	8.35	0.00	1.8	98.2	0.0	1.78	0.77	0.78	2.57	1.9	0.005	0.61	0.0	0.04	16.60	0.00	2.456	8.68	1.40	2.0	98.0	0.0	1.67	0.41	0.78	0.79	2.40	4486	560	2	0	0	0	0	logfile
✔	8SND	40623	2024-09-23	2023-04-27	3.1	3.43	3.22	3.5	0.007	0.59	0.0	0.04	17.17	0.00	2.254	4.23	0.00	1.6	98.2	0.1	1.20	0.60	0.80	2.97	3.4	0.003	0.48	0.0	0.04	16.97	0.00	2.234	3.56	3.80	2.6	97.3	0.1	1.28	0.30	0.62	0.81	2.98	6090	742	4	0	6	8	0	logfile
✔	8TP4	41466	2024-09-26	2023-08-04	3.3	3.25	3.26	3.4	0.020	1.77	7.0	0.10	10.27	0.02	2.221	2.95	0.00	2.6	97.4	0.0	0.69	0.79	0.84	3.98	3.3	0.006	0.70	0.0	0.05	14.61	0.00	2.458	5.04	2.19	3.6	96.3	0.1	0.11	0.72	0.80	0.87	2.96	13472	1678	11	0	18	0	0	logfile
✔	8K2X	36842	2024-09-25	2023-07-14	3.2	3.52	3.20	3.4	0.003	0.57	0.0	0.04	16.75	0.00	2.283	9.17	0.00	4.6	95.4	0.0	0.69	0.83	0.89	2.38	3.4	0.003	0.57	0.0	0.04	17.24	0.00	2.491	6.18	3.64	4.3	95.7	0.0	0.89	0.29	0.82	0.89	2.32	8900	1138	7	0	1	0	0	logfile
✔	8TP7	41469	2024-09-27	2023-08-04	2.8	3.07	2.89	3.1	0.021	1.80	0.0	0.10	10.25	0.01	1.987	1.53	0.00	1.7	98.3	0.0	0.83	0.76	0.85	4.78	3.1	0.004	0.61	0.0	0.04	14.99	0.00	2.456	4.27	2.58	2.2	97.8	0.0	0.51	1.35	0.70	0.84	3.90	17010	2145	15	0	18	0	0	logfile
✔	8TP6	41468	2024-09-27	2023-08-04	3.1	3.47	3.28	3.4	0.021	1.77	3.0	0.11	11.87	0.01	2.326	2.28	0.00	1.2	98.8	0.0	1.02	0.74	0.80	3.71	3.4	0.005	0.86	1.0	0.05	14.34	0.00	2.319	8.21	1.45	3.0	97.0	0.0	0.18	1.80	0.71	0.80	2.87	17008	2126	18	0	27	0	0	logfile
✔	8oTX	17186	2024-09-27	2023-04-21	3.08	3.75	3.14	3.5	0.003	0.44	0.0	0.04	17.93	0.00	2.057	35.10	0.00	6.1	93.9	0.0	2.35	0.74	0.84	1.46	3.6	0.005	0.98	2.0	0.04	17.97	0.00	2.432	8.00	3.07	4.6	95.3	0.1	2.26	0.33	0.76	0.86	1.22	15966	2108	6	0	4	2	0	logfile
✔	8WY4	37915	2024-09-27	2023-10-30	2.81	2.99	2.90	3.0	0.006	1.06	0.0	0.06	15.32	0.01	2.368	2.51	0.00	4.3	95.7	0.0	-3.49	0.69	0.76	2.56	3.0	0.004	0.74	0.0	0.05	17.62	0.00	2.477	5.00	1.87	5.1	94.9	0.0	0.16	0.52	0.69	0.79	2.37	14864	1804	8	0	4	0	0	logfile
✔	8T8M	41099	2024-09-26	2023-06-22	3.0	3.51	—	3.4	0.003	0.56	0.0	0.04	14.01	0.00	2.230	6.14	0.00	4.3	95.7	0.0	0.12	0.80	0.81	3.02	3.4	0.006	0.68	0.0	0.05	15.75	0.00	2.441	5.47	1.82	5.0	95.0	0.0	0.41	0.28	0.82	0.86	2.78	13146	1770	6	0	2	0	0	logfile
✔	8CAD	16524	2024-09-27	2023-01-24	2.85	2.57	2.81	2.7	0.003	0.59	0.0	0.05	11.54	0.00	2.115	5.66	0.00	1.8	98.2	0.0	0.82	0.69	0.81	3.81	2.7	0.005	0.78	0.0	0.04	14.28	0.00	2.134	3.61	1.28	2.9	97.1	0.0	0.74	0.61	0.70	0.85	3.83	64084	3816	30	0	78	766	31062	logfile
✔	8SDA	40350	2024-09-24	2023-04-06	3.32	3.41	3.16	3.4	0.008	1.11	0.0	0.04	15.99	0.00	2.225	15.46	0.00	2.7	97.3	0.0	1.62	0.63	0.81	2.02	3.5	0.003	0.57	0.0	0.04	16.06	0.00	2.557	7.63	1.63	2.0	98.0	0.0	3.09	0.95	0.65	0.85	1.67	7414	939	8	0	19	0	0	logfile
✔	8EKS	28212	2024-09-28	2022-09-21	3.1	3.47	3.18	3.5	0.003	0.62	0.0	0.04	13.55	0.00	2.215	3.64	0.00	1.9	98.1	0.0	-2.29	0.72	0.84	3.39	3.5	0.002	0.46	0.0	0.03	14.92	0.00	2.629	4.40	0.91	1.8	98.2	0.0	2.23	0.37	0.65	0.82	3.14	20484	2504	8	0	4	0	0	logfile
✔	8oXo	17266	2024-09-30	2023-05-02	3.0	3.84	3.29	3.6	0.003	0.51	0.0	0.04	14.35	0.00	2.081	7.05	0.00	2.2	97.8	0.0	1.76	0.79	0.85	2.01	3.6	0.003	0.70	0.0	0.04	16.12	0.00	1.973	7.65	1.72	2.6	97.4	0.0	2.58	1.04	0.80	0.87	1.75	23986	2966	6	0	6	0	0	logfile
✘	8U14	41801	2024-09-28	2023-08-30	3.9	4.27	3.88	4.0	0.003	0.65	0.0	0.04	26.36	0.00	1.330	14.66	0.00	3.3	96.7	0.0	0.65	0.88	0.83	1.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13995	1006	13	293	2	0	0	logfile
✘	8P4X	17429	2024-09-24	2023-05-23	2.57	2.74	2.57	2.8	0.004	0.56	0.0	0.04	13.12	0.00	2.112	1.65	0.00	3.6	96.4	0.0	-0.11	0.74	0.85	5.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8756	1052	6	0	4	84	0	logfile
✔	8PoG	17791	2024-09-23	2023-07-04	4.15	4.36	4.10	4.3	0.003	0.59	0.0	0.04	15.83	0.01	2.242	5.44	0.00	2.3	97.7	0.0	0.40	0.77	0.80	—	4.3	0.003	0.57	0.0	0.04	16.33	0.00	2.571	4.62	0.00	3.1	96.9	0.0	2.26	1.93	0.76	0.79	—	4964	624	4	0	0	0	0	logfile
✘	8Q8S	18259	2024-09-25	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10611	684	9	0	0	0	5409	logfile

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