Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X3F	22021	2024-09-25	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.003	0.62	0.0	0.04	15.83	0.00	2.529	6.00	2.24	3.7	96.3	0.0	-0.31	0.96	0.53	0.84	1.88	9366	1227	6	0	3	0	0	logfile
✔	7XPZ	33386	2024-09-23	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.003	0.66	0.0	0.04	14.17	0.00	2.571	5.96	2.31	4.8	95.2	0.0	-0.96	1.15	0.45	0.77	2.31	3227	402	1	0	0	0	0	logfile
✔	6KiQ	9997	2024-09-27	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.20	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.003	0.77	0.0	0.04	17.69	0.01	2.426	7.29	3.48	9.3	90.1	0.6	-2.36	1.74	0.62	0.74	1.07	15093	968	3	0	0	0	7444	logfile
✔	8GMP	40229	2024-09-26	2023-03-27	2.8	3.00	2.80	3.0	0.006	1.09	0.0	0.05	17.18	0.01	2.034	12.47	2.96	4.8	95.2	0.0	-6.76	0.65	0.82	2.44	3.0	0.003	0.66	0.0	0.04	17.96	0.01	2.615	3.45	1.04	4.7	95.3	0.0	0.61	0.56	0.61	0.81	2.96	13656	1728	16	0	8	0	0	logfile
✔	6oFH	20046	2024-09-25	2019-03-29	3.7	3.79	—	3.8	0.008	0.75	0.0	0.05	7.71	0.01	2.097	3.74	0.00	5.3	94.7	0.0	-6.76	0.59	0.83	1.69	3.7	0.004	0.65	0.0	0.04	16.83	0.00	2.441	7.44	2.55	3.7	96.3	0.0	2.62	1.86	0.60	0.85	0.67	11628	1482	19	0	0	0	0	logfile
✔	7K4A	22662	2024-09-29	2020-09-15	3.26	3.68	—	3.7	0.013	1.44	0.0	0.06	15.27	0.01	2.263	3.83	0.52	10.5	89.4	0.2	-6.74	0.52	0.81	4.18	3.7	0.003	0.73	0.0	0.04	15.58	0.00	2.225	5.53	2.37	9.7	90.3	0.0	-2.22	1.33	0.61	0.86	2.66	20825	2420	8	0	65	0	0	logfile
✔	7XQ0	33387	2024-09-23	2022-05-06	3.0	2.77	3.09	3.2	0.014	1.26	0.0	0.06	13.01	0.01	2.232	7.04	0.86	1.5	98.5	0.0	-6.72	0.49	0.79	4.03	3.2	0.004	0.64	0.0	0.04	14.16	0.00	2.589	6.59	1.73	1.0	99.0	0.0	1.27	1.11	0.46	0.80	3.17	3320	402	2	0	2	0	0	logfile
✔	7V2W	31669	2024-09-29	2021-08-10	3.2	3.43	—	3.4	0.006	1.08	0.0	0.05	15.89	0.01	2.276	2.96	0.24	7.1	92.9	0.1	-6.70	0.74	0.82	2.09	3.4	0.003	0.65	0.0	0.04	17.27	0.00	2.557	4.51	2.03	6.2	93.8	0.0	-1.85	0.62	0.75	0.84	1.39	21619	2655	5	0	0	0	0	logfile
✔	7D10	30542	2024-09-24	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	14.26	0.00	2.558	6.42	3.20	6.2	93.8	0.0	-1.42	1.20	0.63	0.82	2.67	6424	892	4	0	4	0	0	logfile
✔	6TUQ	10594	2024-09-27	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.69	0.0	0.04	12.36	0.00	2.645	9.32	0.44	0.0	100.0	0.0	-0.22	1.65	0.69	0.88	1.06	16100	2300	50	0	0	0	0	logfile
✔	6HYD	0308	2024-09-26	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	4.0	0.003	0.67	0.0	0.04	14.51	0.00	2.390	4.09	3.21	5.9	93.9	0.2	-0.97	1.73	0.76	0.79	1.53	12168	1543	2	0	31	0	0	logfile
✔	5o3L	3741	2024-09-25	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.006	1.18	0.0	0.05	15.33	0.01	2.173	13.91	2.97	15.8	84.2	0.0	-5.62	2.66	0.56	0.74	2.68	11360	730	10	0	0	0	5790	logfile
✔	6PWE	20506	2024-09-25	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.12	0.01	2.264	5.38	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.004	0.63	0.0	0.03	27.77	0.00	2.042	9.50	4.21	3.6	96.4	0.0	-1.20	1.13	0.70	0.80	1.29	11923	744	10	294	0	0	0	logfile
✔	8K0X	36780	2024-09-24	2023-07-10	3.2	3.37	3.16	3.4	0.008	1.04	0.0	0.06	9.78	0.01	2.307	1.16	0.00	7.9	92.1	0.0	-6.65	0.67	0.84	4.34	3.4	0.003	0.62	0.0	0.04	14.09	0.00	2.556	3.61	2.72	5.4	94.6	0.0	-1.68	1.26	0.66	0.86	2.54	8447	1084	3	0	1	0	0	logfile
✔	6QM5	4588	2024-09-25	2019-02-01	3.6	3.74	3.61	3.7	0.007	0.83	0.0	0.05	15.76	0.01	2.311	4.02	0.00	4.1	95.9	0.0	-6.65	0.70	0.85	2.84	3.7	0.003	0.64	0.0	0.04	16.97	0.00	2.250	4.99	1.73	3.0	97.0	0.0	-0.40	0.51	0.70	0.85	2.18	10874	1346	4	0	4	0	0	logfile
✔	6H3J	0134	2024-09-28	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.38	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.60	0.0	0.04	13.57	0.00	2.264	50.41	2.03	17.9	82.1	0.0	-5.00	2.68	0.77	0.86	2.67	20301	2511	3	0	0	0	212	logfile
✔	8GA3	29885	2024-09-24	2023-02-22	3.1	3.32	3.21	3.3	0.005	0.89	0.0	0.05	14.76	0.01	2.294	4.25	0.00	7.0	93.0	0.0	-6.60	0.65	0.81	2.52	3.3	0.003	0.68	0.0	0.04	15.73	0.00	2.532	6.18	0.91	6.6	93.4	0.0	-0.73	0.40	0.60	0.81	1.58	6590	886	4	0	4	0	0	logfile
✔	8iET	35393	2024-09-25	2023-02-15	3.5	3.56	3.44	3.6	0.006	0.88	0.0	0.06	13.90	0.01	2.207	3.18	0.45	5.9	93.9	0.2	-6.60	0.65	0.84	3.54	3.6	0.002	0.59	0.0	0.04	15.53	0.00	2.502	3.90	2.15	3.1	96.9	0.0	-1.73	0.42	0.64	0.83	2.35	10184	1306	2	0	0	0	0	logfile
✔	7DV5	30870	2024-09-25	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	14.00	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	3.7	0.005	0.96	2.0	0.04	16.39	0.01	1.978	8.81	4.35	6.8	93.2	0.0	-3.53	1.58	0.63	0.79	1.04	9319	1189	2	0	2	0	0	logfile
✔	7YKS	33896	2024-09-28	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.004	0.80	0.0	0.04	16.62	0.00	2.364	7.21	1.33	4.4	95.6	0.0	-0.50	2.17	0.60	0.80	1.50	18984	2364	4	0	0	0	0	logfile

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