Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J8J	36071	2024-10-10	2023-05-01	2.76	2.89	2.73	2.9	0.011	1.19	1.0	0.06	19.32	0.00	1.717	4.57	0.00	4.1	95.9	0.0	-2.54	0.65	0.84	2.59	2.9	0.003	0.61	0.0	0.04	17.74	0.00	2.000	3.57	1.79	2.7	97.3	0.0	1.86	0.47	0.65	0.85	2.83	6873	870	6	0	9	0	0	logfile
✔	8J87	36062	2024-10-10	2023-05-01	3.42	4.18	3.44	3.5	0.002	0.54	0.0	0.04	10.98	0.00	2.196	7.33	0.00	3.7	96.3	0.0	-0.40	0.79	0.59	0.98	3.5	0.002	0.59	0.0	0.04	13.64	0.00	2.527	9.63	1.54	5.4	94.6	0.0	0.34	0.99	0.81	0.63	0.52	7846	954	2	0	0	0	0	logfile
✔	8J8B	36066	2024-10-12	2023-05-01	2.43	3.24	2.54	3.1	0.002	0.41	0.0	0.04	9.83	0.00	2.210	5.68	0.15	3.4	96.6	0.0	1.04	0.81	0.87	3.99	3.0	0.003	0.54	0.0	0.04	12.78	0.00	2.571	3.53	0.23	4.6	95.4	0.0	0.70	1.23	0.81	0.88	3.79	12330	1518	2	0	0	0	0	logfile
✔	8J8A	36065	2024-10-12	2023-05-01	2.51	3.34	2.59	3.1	0.003	0.50	0.0	0.04	12.92	0.00	2.197	7.41	0.08	2.0	98.0	0.0	1.03	0.81	0.85	3.53	3.1	0.003	0.57	0.0	0.04	14.65	0.00	2.552	6.18	0.91	2.8	97.2	0.0	0.91	1.93	0.81	0.86	3.70	12222	1502	2	0	0	0	0	logfile
✔	8J8F	36068	2024-10-13	2023-05-01	2.98	3.17	3.03	3.2	0.002	0.46	0.0	0.04	15.40	0.00	1.861	6.73	0.07	4.8	95.2	0.0	0.21	0.68	0.75	2.13	3.2	0.005	0.70	0.0	0.05	18.30	0.00	1.788	10.17	2.57	6.5	93.4	0.1	-0.84	0.55	0.69	0.81	2.62	14159	1642	6	36	4	0	0	logfile
✔	8oXB	17263	2024-10-12	2023-05-01	2.99	3.42	3.04	3.4	0.003	0.58	0.0	0.04	14.73	0.01	1.992	6.25	0.00	3.8	96.2	0.0	-0.48	0.61	0.76	3.61	3.4	0.003	0.64	0.0	0.04	15.99	0.00	2.009	6.43	1.42	3.5	96.5	0.0	0.65	0.44	0.62	0.78	3.08	11137	1363	6	0	8	10	0	logfile
✔	8J88	36063	2024-10-10	2023-05-01	3.49	4.36	3.55	3.5	0.002	0.56	0.0	0.04	11.87	0.00	2.205	5.61	0.00	4.8	95.2	0.0	-0.95	0.81	0.59	0.05	3.5	0.003	0.61	0.0	0.04	14.29	0.00	2.608	10.01	1.07	6.9	93.1	0.0	-0.02	1.09	0.82	0.63	0.63	7846	954	2	0	0	0	0	logfile
✔	8oX4	17256	2024-10-11	2023-05-01	3.4	3.52	3.20	3.5	0.005	0.61	0.0	0.04	15.73	0.00	1.898	5.96	0.00	2.8	97.2	0.0	-0.65	0.60	0.76	1.89	3.5	0.003	0.57	0.0	0.04	16.29	0.00	1.965	7.14	1.33	3.1	96.9	0.0	0.25	0.38	0.65	0.78	1.93	9757	1198	6	0	7	1	0	logfile
✔	8oX5	17257	2024-10-11	2023-05-01	2.9	3.29	2.97	3.3	0.006	1.13	0.0	0.04	14.36	0.00	1.430	9.98	0.00	6.0	94.0	0.0	-1.86	0.53	0.61	1.95	3.3	0.004	0.96	0.0	0.05	16.20	0.00	2.073	13.94	1.34	4.7	95.3	0.0	-1.48	0.52	0.48	0.62	1.33	9751	1197	6	0	8	1	0	logfile
✔	8SoY	40671	2024-10-11	2023-04-30	2.85	2.95	2.81	3.0	0.005	0.73	0.0	0.05	12.14	0.01	2.374	1.86	0.00	2.3	97.7	0.0	-0.69	0.70	0.82	2.95	3.0	0.004	0.61	0.0	0.05	15.27	0.01	2.591	2.76	3.73	2.7	97.3	0.0	-0.10	0.26	0.70	0.83	1.69	10074	1422	6	0	0	0	0	logfile
✔	8J84	36059	2024-10-10	2023-04-30	3.3	4.04	3.29	3.9	0.002	0.58	0.0	0.04	17.27	0.00	2.166	15.78	4.31	5.6	94.4	0.0	-1.01	0.80	0.77	1.33	3.9	0.003	0.63	0.0	0.04	17.44	0.00	2.482	11.62	4.68	5.9	94.1	0.0	-0.98	0.33	0.80	0.77	1.00	7448	906	2	0	0	0	0	logfile
✔	8J86	36061	2024-10-12	2023-04-30	3.22	3.47	3.26	3.4	0.002	0.52	0.0	0.04	17.00	0.00	1.849	11.79	0.00	10.3	89.7	0.0	-1.41	0.64	0.62	1.35	3.4	0.004	0.72	0.0	0.04	18.70	0.00	1.792	15.12	2.09	11.8	88.1	0.1	-2.34	1.06	0.66	0.66	1.56	13367	1552	6	35	3	0	0	logfile
✔	8J7X	36052	2024-10-12	2023-04-28	3.4	3.93	3.38	3.7	0.002	0.45	0.0	0.04	10.17	0.00	2.029	4.79	0.16	2.4	97.5	0.1	1.75	0.74	0.78	1.98	3.7	0.005	0.69	0.0	0.04	14.89	0.00	2.377	7.23	2.90	3.7	96.3	0.0	1.21	1.63	0.77	0.88	2.37	11136	1440	6	0	0	0	0	logfile
✔	8oWK	17239	2024-10-09	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.006	0.85	0.0	0.05	14.40	0.00	2.462	17.09	0.97	6.3	93.7	0.0	-3.39	1.71	0.49	0.74	6.86	3050	400	10	0	0	0	0	logfile
✔	8oWJ	17238	2024-10-09	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.004	0.91	0.0	0.05	16.37	0.00	2.574	17.69	0.36	9.7	90.3	0.0	-3.30	1.91	0.49	0.72	3.13	2720	360	10	0	0	0	0	logfile
✔	8SNX	40641	2024-10-13	2023-04-28	3.4	3.30	3.34	3.3	0.003	0.57	0.0	0.04	15.10	0.00	2.202	10.24	0.33	3.0	97.0	0.0	1.44	0.71	0.84	2.87	3.3	0.007	0.69	1.0	0.04	16.39	0.01	1.828	9.59	2.41	3.2	96.8	0.0	1.44	1.11	0.73	0.87	2.53	13741	1675	6	10	0	0	0	logfile
✔	8oX1	17252	2024-10-12	2023-04-28	2.7	3.00	2.89	3.0	0.009	1.05	1.0	0.06	26.00	0.01	2.326	5.33	0.00	1.8	98.2	0.0	0.87	0.82	0.89	4.59	3.0	0.004	0.57	0.0	0.03	27.18	0.00	2.481	5.45	1.57	1.8	98.2	0.0	2.92	0.90	0.83	0.90	3.46	13258	905	19	290	0	11	0	logfile
✔	8oX0	17251	2024-10-12	2023-04-28	2.52	2.85	2.85	2.9	0.007	0.88	0.0	0.06	27.18	0.01	2.156	2.71	0.00	1.0	99.0	0.0	1.78	0.77	0.79	4.78	2.9	0.005	0.62	0.0	0.04	28.26	0.00	2.030	3.52	1.83	2.1	97.9	0.0	2.50	0.25	0.84	0.89	3.73	12271	787	20	290	0	57	0	logfile
✔	8J7U	36049	2024-10-12	2023-04-28	3.12	3.20	3.07	3.1	0.004	0.83	0.0	0.05	15.33	0.01	1.982	8.65	1.88	3.7	96.3	0.0	0.27	0.60	0.75	2.50	3.1	0.007	0.78	0.0	0.05	16.02	0.01	2.010	11.62	4.49	3.9	96.1	0.0	0.49	0.50	0.65	0.68	2.10	11003	1423	8	0	2	0	0	logfile
✘	8So3	40646	2024-10-14	2023-04-28	3.61	3.84	3.58	3.8	0.005	0.85	1.0	0.05	13.96	0.01	1.803	10.38	0.68	6.5	93.4	0.2	-1.49	0.73	0.72	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16718	1205	8	0	4	0	7947	logfile

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