Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oWE	17235	2024-10-09	2023-04-27	3.75	3.64	3.54	3.8	0.014	2.47	20.0	0.17	22.52	0.03	1.831	11.09	18.33	1.4	98.6	0.0	-2.67	0.41	0.73	5.00	3.7	0.003	0.81	0.0	0.05	18.24	0.00	2.593	13.52	6.33	7.4	92.6	0.0	-3.82	1.48	0.43	0.76	5.27	2940	385	10	0	0	0	0	logfile
✔	8J75	36027	2024-10-09	2023-04-27	3.6	3.91	3.75	3.9	0.004	0.72	0.0	0.04	20.25	0.00	2.261	16.76	0.00	8.0	91.8	0.2	0.40	0.57	0.69	1.64	3.9	0.003	0.69	0.0	0.04	15.99	0.00	2.439	12.19	5.09	6.4	93.4	0.2	0.59	0.35	0.54	0.71	1.24	3956	515	3	0	4	0	0	logfile
✔	8J77	36030	2024-10-09	2023-04-27	3.7	3.92	3.74	4.0	0.006	1.03	0.0	0.06	15.39	0.01	2.149	13.42	0.27	8.6	91.4	0.0	-0.89	0.59	0.78	2.99	4.0	0.003	0.67	0.0	0.04	15.32	0.00	2.578	7.57	2.65	6.8	93.2	0.0	0.61	0.51	0.55	0.76	2.20	3778	493	3	0	4	0	0	logfile
✔	8J7D	36038	2024-10-11	2023-04-27	2.7	3.41	2.88	3.0	0.009	1.29	18.0	0.09	12.92	0.01	2.294	9.43	1.09	2.1	97.8	0.1	1.29	0.83	0.77	2.43	3.0	0.003	0.63	0.0	0.04	14.88	0.00	2.517	5.92	1.24	2.4	97.6	0.0	1.28	0.78	0.84	0.85	2.63	55522	7168	18	0	6	0	0	logfile
✔	8J7N	36043	2024-10-09	2023-04-27	3.0	3.05	2.62	3.0	0.008	0.82	0.0	0.06	12.26	0.00	2.025	16.74	0.00	13.5	86.5	0.0	-5.22	0.42	0.90	5.56	3.0	0.003	0.69	0.0	0.05	15.66	0.00	2.557	6.91	3.17	10.0	90.0	0.0	-4.12	1.29	0.40	0.91	4.55	3258	405	3	0	0	0	0	logfile
✔	8SMW	40604	2024-10-13	2023-04-26	3.3	3.47	3.30	3.5	0.003	0.53	0.0	0.03	26.23	0.00	1.329	5.51	0.00	2.6	97.4	0.0	1.72	0.73	0.85	3.28	3.5	0.004	0.55	0.0	0.04	26.55	0.00	2.148	4.69	0.93	2.7	97.3	0.0	2.02	1.35	0.71	0.85	2.84	13998	1000	13	294	2	0	0	logfile
✔	8SMY	40606	2024-10-14	2023-04-26	3.2	3.41	3.24	3.4	0.003	0.54	0.0	0.03	26.40	0.01	1.330	5.54	0.00	1.9	98.1	0.0	1.40	0.73	0.85	3.28	3.4	0.003	0.56	0.0	0.04	26.72	0.00	2.194	3.44	1.99	2.8	97.2	0.0	1.46	0.18	0.73	0.86	2.85	13998	1000	13	294	2	0	0	logfile
✔	8SMK	40589	2024-10-13	2023-04-26	3.5	3.69	3.50	3.6	0.011	1.38	0.0	0.06	11.02	0.01	2.043	0.39	0.00	1.5	98.5	0.0	1.26	0.68	0.80	3.28	3.6	0.003	0.64	0.0	0.04	14.29	0.00	2.207	5.26	1.45	2.2	97.8	0.0	1.34	1.45	0.73	0.84	2.63	15298	1982	8	0	8	0	0	logfile
✔	8J6M	36008	2024-10-11	2023-04-26	2.77	2.98	2.81	3.0	0.008	1.10	5.0	0.08	16.07	0.01	1.857	12.21	1.59	2.3	97.6	0.1	0.97	0.60	0.79	4.07	3.0	0.004	0.58	0.0	0.04	16.06	0.00	1.822	7.00	3.18	2.0	98.0	0.0	1.76	1.11	0.65	0.83	3.87	10599	1282	5	0	13	2	0	logfile
✔	8J6J	36006	2024-10-11	2023-04-26	2.8	2.60	2.74	2.9	0.004	0.62	0.0	0.04	14.73	0.00	2.098	8.22	0.21	2.6	97.4	0.0	1.70	0.45	0.63	1.61	2.8	0.003	1.01	1.0	0.04	16.30	0.00	2.347	8.50	3.23	3.6	96.4	0.0	0.73	1.06	0.61	0.78	2.60	8979	1151	6	0	1	0	0	logfile
✔	8SMP	40598	2024-10-10	2023-04-26	3.4	3.42	3.22	3.4	0.002	0.53	0.0	0.04	16.40	0.00	2.186	6.37	0.30	4.1	95.7	0.1	1.14	0.61	0.79	2.42	3.4	0.004	0.61	0.0	0.04	16.89	0.00	1.931	5.62	3.94	4.8	95.0	0.1	0.92	2.17	0.69	0.85	2.38	6097	757	5	1	1	0	0	logfile
✔	8SMN	40594	2024-10-10	2023-04-26	3.2	3.28	3.05	3.3	0.005	0.61	0.0	0.04	17.26	0.00	2.239	4.61	0.15	3.7	96.3	0.0	0.81	0.68	0.85	2.71	3.3	0.003	0.54	0.0	0.04	16.97	0.00	2.535	4.45	3.82	3.8	96.2	0.0	1.23	0.33	0.68	0.86	3.09	6138	749	5	0	9	1	0	logfile
✔	8SN4	40612	2024-10-13	2023-04-26	3.7	3.82	3.66	3.7	0.003	0.55	0.0	0.03	25.75	0.00	1.331	8.20	0.00	2.3	97.7	0.0	1.84	0.82	0.85	1.24	3.8	0.003	0.61	0.0	0.03	26.64	0.00	2.072	7.19	2.27	2.9	97.1	0.0	1.75	0.37	0.82	0.86	1.06	14600	1076	14	294	2	0	0	logfile
✔	8SNA	40618	2024-10-13	2023-04-26	4.0	4.05	3.94	3.9	0.004	0.59	0.0	0.03	25.68	0.00	1.330	10.00	0.00	3.3	96.7	0.0	1.91	0.85	0.86	—	3.9	0.003	0.63	0.0	0.03	26.39	0.00	2.078	9.25	1.85	3.5	96.5	0.0	1.88	0.41	0.86	0.85	—	14591	1076	14	294	2	0	0	logfile
✔	8SN9	40617	2024-10-13	2023-04-26	3.9	3.90	3.78	3.8	0.003	0.55	0.0	0.03	25.89	0.00	1.329	7.72	0.00	2.5	97.5	0.0	1.88	0.83	0.84	0.89	3.8	0.004	0.63	0.0	0.04	26.32	0.00	2.126	7.76	0.87	2.4	97.6	0.0	1.63	1.37	0.83	0.84	0.58	14591	1076	14	294	2	0	0	logfile
✔	8SN0	40608	2024-10-12	2023-04-26	3.2	3.37	3.21	3.4	0.004	0.56	0.0	0.04	26.42	0.00	1.331	5.43	0.00	2.4	97.6	0.0	1.04	0.75	0.85	2.59	3.4	0.005	0.58	0.0	0.04	26.90	0.00	2.118	4.10	1.17	2.6	97.4	0.0	1.55	0.21	0.74	0.87	2.39	13989	1000	13	294	2	0	0	logfile
✔	8oVK	17218	2024-10-09	2023-04-26	2.88	3.04	1.81	3.2	0.012	1.80	0.0	0.11	14.99	0.01	2.386	4.35	12.90	5.3	94.7	0.0	-1.83	0.53	0.84	5.68	3.1	0.003	0.67	0.0	0.05	18.10	0.00	2.546	9.87	4.84	2.4	97.6	0.0	-3.00	0.65	0.53	0.85	5.87	3060	400	10	0	0	0	0	logfile
✔	8J6Q	36011	2024-10-11	2023-04-26	2.6	2.86	2.68	2.8	0.005	0.69	0.0	0.05	13.24	0.00	2.191	7.12	0.00	2.7	97.3	0.0	0.40	0.69	0.81	4.26	2.8	0.003	0.57	0.0	0.04	15.50	0.00	2.491	7.67	1.51	3.0	97.0	0.0	0.87	0.39	0.68	0.84	4.14	9187	1151	6	0	5	1	0	logfile
✔	8oVM	17223	2024-10-09	2023-04-26	3.24	3.35	1.89	3.4	0.007	0.99	0.0	0.09	11.00	0.00	2.447	9.68	0.00	2.9	97.1	0.0	-3.60	0.43	0.78	4.59	3.4	0.003	0.75	0.0	0.05	14.25	0.00	2.611	7.82	5.71	6.5	93.5	0.0	-3.33	1.51	0.45	0.80	3.88	1360	180	5	0	0	0	0	logfile
✔	8SMX	40605	2024-10-14	2023-04-26	3.2	3.37	3.21	3.3	0.003	0.57	0.0	0.04	26.38	0.00	1.330	4.49	0.00	1.9	98.1	0.0	1.43	0.74	0.85	2.99	3.3	0.004	0.58	0.0	0.04	26.66	0.00	2.150	4.02	0.93	2.2	97.8	0.0	1.50	0.18	0.73	0.87	2.81	13998	1000	13	294	2	0	0	logfile

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