Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SMX	40605	2024-10-14	2023-04-26	3.2	3.37	3.21	3.3	0.003	0.57	0.0	0.04	26.38	0.00	1.330	4.49	0.00	1.9	98.1	0.0	1.43	0.74	0.85	2.99	3.3	0.004	0.58	0.0	0.04	26.66	0.00	2.150	4.02	0.93	2.2	97.8	0.0	1.50	0.18	0.73	0.87	2.81	13998	1000	13	294	2	0	0	logfile
✔	8SMV	40603	2024-10-10	2023-04-26	2.74	3.28	2.72	3.2	0.004	0.65	0.0	0.04	12.72	0.00	2.162	1.85	0.00	3.0	97.0	0.0	0.53	0.76	0.85	3.47	3.2	0.004	0.64	0.0	0.05	15.67	0.00	2.403	4.06	2.62	3.1	96.9	0.0	0.82	1.30	0.72	0.88	2.83	8169	1034	6	0	1	0	0	logfile
✔	8SMN	40594	2024-10-10	2023-04-26	3.2	3.28	3.05	3.3	0.005	0.61	0.0	0.04	17.26	0.00	2.239	4.61	0.15	3.7	96.3	0.0	0.81	0.68	0.85	2.71	3.3	0.003	0.54	0.0	0.04	16.97	0.00	2.535	4.45	3.82	3.8	96.2	0.0	1.23	0.33	0.68	0.86	3.09	6138	749	5	0	9	1	0	logfile
✔	8SNA	40618	2024-10-13	2023-04-26	4.0	4.05	3.94	3.9	0.004	0.59	0.0	0.03	25.68	0.00	1.330	10.00	0.00	3.3	96.7	0.0	1.91	0.85	0.86	—	3.9	0.003	0.63	0.0	0.03	26.39	0.00	2.078	9.25	1.85	3.5	96.5	0.0	1.88	0.41	0.86	0.85	—	14591	1076	14	294	2	0	0	logfile
✔	8J6M	36008	2024-10-11	2023-04-26	2.77	2.98	2.81	3.0	0.008	1.10	5.0	0.08	16.07	0.01	1.857	12.21	1.59	2.3	97.6	0.1	0.97	0.60	0.79	4.07	3.0	0.004	0.58	0.0	0.04	16.06	0.00	1.822	7.00	3.18	2.0	98.0	0.0	1.76	1.11	0.65	0.83	3.87	10599	1282	5	0	13	2	0	logfile
✔	8SN2	40610	2024-10-12	2023-04-26	3.6	3.75	3.64	3.8	0.003	0.53	0.0	0.03	25.92	0.00	1.329	7.23	0.00	1.8	98.2	0.0	2.22	0.75	0.83	1.35	3.7	0.004	0.62	0.0	0.04	27.06	0.00	2.136	6.25	1.99	3.9	96.1	0.0	1.69	0.38	0.72	0.84	1.04	13992	1000	13	294	2	0	0	logfile
✔	8SN3	40611	2024-10-13	2023-04-26	3.8	3.89	3.81	3.8	0.003	0.55	0.0	0.03	25.55	0.00	1.329	8.86	0.00	2.6	97.4	0.0	1.98	0.83	0.84	1.28	3.8	0.003	0.63	0.0	0.04	26.49	0.00	2.095	7.93	1.84	2.7	97.3	0.0	1.72	1.39	0.82	0.84	1.08	14612	1078	14	294	2	0	0	logfile
✔	8SN5	40613	2024-10-13	2023-04-26	3.9	4.01	3.84	3.9	0.003	0.57	0.0	0.03	25.64	0.00	1.329	9.43	0.11	2.8	97.2	0.0	2.26	0.85	0.85	1.02	3.9	0.003	0.66	0.0	0.04	26.58	0.00	2.104	9.65	2.16	3.5	96.5	0.0	1.78	1.42	0.85	0.85	0.92	14600	1076	14	294	2	0	0	logfile
✔	8SMK	40589	2024-10-13	2023-04-26	3.5	3.69	3.50	3.6	0.011	1.38	0.0	0.06	11.02	0.01	2.043	0.39	0.00	1.5	98.5	0.0	1.26	0.68	0.80	3.28	3.6	0.003	0.64	0.0	0.04	14.29	0.00	2.207	5.26	1.45	2.2	97.8	0.0	1.34	1.45	0.73	0.84	2.63	15298	1982	8	0	8	0	0	logfile
✔	8SMP	40598	2024-10-10	2023-04-26	3.4	3.42	3.22	3.4	0.002	0.53	0.0	0.04	16.40	0.00	2.186	6.37	0.30	4.1	95.7	0.1	1.14	0.61	0.79	2.42	3.4	0.004	0.61	0.0	0.04	16.89	0.00	1.931	5.62	3.94	4.8	95.0	0.1	0.92	2.17	0.69	0.85	2.38	6097	757	5	1	1	0	0	logfile
✔	8SN4	40612	2024-10-13	2023-04-26	3.7	3.82	3.66	3.7	0.003	0.55	0.0	0.03	25.75	0.00	1.331	8.20	0.00	2.3	97.7	0.0	1.84	0.82	0.85	1.24	3.8	0.003	0.61	0.0	0.03	26.64	0.00	2.072	7.19	2.27	2.9	97.1	0.0	1.75	0.37	0.82	0.86	1.06	14600	1076	14	294	2	0	0	logfile
✘	8SN1	40609	2024-10-14	2023-04-26	3.3	3.44	3.29	3.4	0.003	0.52	0.0	0.03	26.48	0.00	1.329	5.23	0.12	2.0	98.0	0.0	1.60	0.71	0.84	3.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13998	1000	13	294	2	0	0	logfile
✔	8oVM	17223	2024-10-09	2023-04-26	3.24	3.35	1.89	3.4	0.007	0.99	0.0	0.09	11.00	0.00	2.447	9.68	0.00	2.9	97.1	0.0	-3.60	0.43	0.78	4.59	3.4	0.003	0.75	0.0	0.05	14.25	0.00	2.611	7.82	5.71	6.5	93.5	0.0	-3.33	1.51	0.45	0.80	3.88	1360	180	5	0	0	0	0	logfile
✔	8SMZ	40607	2024-10-12	2023-04-26	3.2	3.42	3.24	3.4	0.004	0.57	0.0	0.04	26.57	0.00	1.330	5.43	0.00	2.8	97.2	0.0	1.15	0.73	0.84	3.11	3.4	0.004	0.56	0.0	0.04	26.73	0.00	2.180	4.41	0.58	2.4	97.6	0.0	1.64	0.20	0.70	0.84	2.64	13998	1000	13	294	2	0	0	logfile
✔	8J6F	36003	2024-10-09	2023-04-25	3.3	3.50	3.25	3.5	0.009	1.06	0.0	0.06	14.30	0.01	2.208	7.88	0.00	9.8	90.2	0.0	-3.18	0.64	0.73	2.32	3.5	0.004	0.73	0.0	0.04	15.98	0.01	2.563	13.00	3.19	9.2	90.8	0.0	-2.25	0.40	0.64	0.76	2.55	3870	496	5	0	1	0	0	logfile
✔	8J6D	36001	2024-10-10	2023-04-25	3.1	2.42	3.21	3.1	0.004	0.73	0.0	0.04	12.64	0.00	2.133	7.07	0.38	3.8	96.2	0.0	-1.02	0.77	0.76	3.05	3.1	0.003	0.65	0.0	0.04	14.72	0.00	2.527	7.45	2.54	4.1	95.9	0.0	0.02	1.24	0.77	0.76	2.12	8149	1123	6	0	0	0	0	logfile
✔	8oUZ	17206	2024-10-13	2023-04-25	2.2	2.43	2.22	2.4	0.003	0.56	0.0	0.04	16.59	0.00	1.833	4.42	1.00	3.4	96.6	0.0	1.04	0.75	0.79	4.38	2.4	0.003	0.55	0.0	0.04	16.56	0.00	1.769	3.88	2.00	3.2	96.8	0.0	0.75	0.48	0.73	0.78	4.13	14822	924	11	0	6	142	7373	logfile
✔	8oUW	17204	2024-10-10	2023-04-25	3.75	3.90	3.25	3.5	0.006	0.91	0.0	0.05	14.71	0.01	2.008	0.19	0.38	2.0	98.0	0.0	0.31	0.81	0.65	1.53	3.4	0.003	0.65	0.0	0.04	16.19	0.00	1.912	5.99	1.00	2.7	97.3	0.0	1.33	0.91	0.89	0.82	1.33	53754	6564	25	67	13	0	0	logfile
✘	8oUY	17205	2024-10-13	2023-04-25	3.4	2.97	3.46	3.3	0.002	0.52	0.0	0.04	17.65	0.00	1.811	4.62	0.00	4.5	95.5	0.0	-0.78	0.71	0.78	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14695	925	7	0	6	0	7380	logfile
✔	8J62	35999	2024-10-11	2023-04-24	2.5	3.25	2.43	3.0	0.002	0.46	0.0	0.04	18.88	0.00	2.216	9.71	2.91	0.9	99.1	0.0	1.53	0.80	0.83	3.47	3.0	0.004	0.69	0.0	0.04	18.97	0.00	2.500	8.16	4.51	1.3	98.7	0.0	1.54	1.28	0.78	0.85	3.68	10448	1182	14	38	2	0	0	logfile

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