Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SDE	23517	2021-11-01	2021-09-29	3.2	3.37	—	3.3	0.004	0.92	1.0	0.06	17.03	0.00	2.201	25.84	8.60	10.6	89.1	0.3	-4.65	0.74	0.77	2.50	3.3	0.005	0.79	0.0	0.04	17.42	0.01	2.165	10.50	0.17	7.2	92.8	0.0	-0.25	0.61	0.75	0.79	2.41	5734	726	2	0	0	0	0	logfile
✔	7VH3	31985	2021-11-02	2021-09-20	3.6	3.70	—	3.7	0.005	1.09	0.0	0.06	11.49	0.01	2.257	7.95	0.90	8.5	91.0	0.4	-4.84	0.68	0.69	1.85	3.6	0.011	1.13	1.0	0.04	15.52	0.00	2.190	13.24	0.21	7.6	92.3	0.1	-1.20	1.67	0.70	0.73	1.24	12749	1612	1	0	0	0	0	logfile
✔	7VH1	31983	2021-11-02	2021-09-20	4.2	4.15	—	4.0	0.009	1.32	0.0	0.07	12.24	0.01	2.222	5.93	0.74	11.9	87.8	0.2	-5.32	0.79	0.75	—	4.0	0.003	0.74	0.0	0.04	12.82	0.00	2.155	11.51	0.00	8.3	91.7	0.0	-1.77	3.34	0.79	0.76	—	13156	1661	2	0	2	0	0	logfile
✔	7VGQ	31975	2021-11-02	2021-09-18	4.0	4.26	—	4.2	0.009	1.27	2.0	0.07	12.16	0.01	2.211	7.11	0.74	13.9	85.9	0.2	-5.44	0.71	0.75	—	4.2	0.004	0.75	0.0	0.04	15.07	0.01	2.128	9.16	0.20	7.4	92.5	0.1	-2.07	0.72	0.70	0.76	—	13156	1661	2	0	2	0	0	logfile
✘	7PQE	13591	2021-11-02	2021-09-17	3.7	3.72	—	3.6	0.006	0.68	0.0	0.04	13.13	0.00	2.107	12.28	0.09	5.6	94.4	0.0	-1.09	0.81	0.82	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10746	1365	5	0	2	0	0	logfile
✔	7VG3	31964	2021-11-01	2021-09-14	3.73	3.86	—	3.8	0.006	1.15	2.0	0.06	12.99	0.01	1.935	7.51	5.13	10.8	88.7	0.6	-4.51	0.80	0.84	3.10	3.8	0.004	0.74	0.0	0.04	14.84	0.01	2.270	9.83	0.39	9.2	90.8	0.0	-1.16	1.09	0.79	0.84	1.75	8118	860	4	62	3	0	0	logfile
✔	7VG2	31963	2021-11-01	2021-09-14	3.1	2.73	—	3.0	0.016	1.43	1.0	0.09	12.86	0.01	1.822	17.56	1.74	8.0	91.8	0.2	-3.84	0.72	0.79	3.83	3.0	0.004	0.67	0.0	0.04	14.08	0.01	2.163	14.49	0.27	6.9	93.1	0.0	0.00	1.24	0.72	0.79	2.22	8203	845	4	71	3	0	0	logfile
✘	7PPo	13583	2021-11-02	2021-09-14	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10991	1382	5	0	3	0	1	logfile
✔	7S65	24850	2021-11-03	2021-09-13	3.2	3.04	3.23	3.3	0.014	1.46	0.0	0.07	11.66	0.01	1.385	8.25	0.26	2.0	98.0	0.0	0.19	0.64	0.74	3.55	3.2	0.012	0.89	0.0	0.04	15.78	0.01	1.895	10.39	0.35	2.7	97.3	0.0	0.25	0.70	0.66	0.79	3.13	22049	2760	12	0	24	0	0	logfile
✔	7S66	24851	2021-11-03	2021-09-13	2.8	3.06	2.88	3.1	0.013	1.34	0.0	0.06	10.54	0.01	1.770	2.28	0.00	1.4	98.6	0.0	0.50	0.75	0.83	3.82	3.0	0.004	0.54	0.0	0.04	16.37	0.00	1.940	5.64	2.29	1.8	98.2	0.0	0.93	1.37	0.75	0.86	3.51	23242	2910	12	0	24	0	0	logfile
✔	7S67	24852	2021-11-03	2021-09-13	3.8	3.64	3.80	3.9	0.013	1.39	0.0	0.07	11.90	0.01	1.815	5.58	0.00	1.5	98.5	0.0	0.25	0.70	0.73	2.10	3.8	0.004	0.76	0.0	0.05	16.27	0.01	1.977	14.79	0.78	2.6	97.4	0.0	-0.13	2.77	0.71	0.80	1.45	23058	2892	12	0	24	0	0	logfile
✔	7PMY	13544	2021-11-02	2021-09-04	3.8	4.01	3.75	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.005	0.59	0.0	0.04	12.34	0.00	1.955	8.00	0.18	3.8	96.2	0.0	0.89	0.82	0.65	0.80	1.82	10499	659	2	0	0	0	5276	logfile
✔	7PN1	13545	2021-11-02	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.008	1.19	0.0	0.04	14.95	0.01	1.932	9.35	0.18	2.2	97.8	0.0	1.43	0.99	0.61	0.80	0.84	10384	657	1	0	0	0	5237	logfile
✔	7PMX	13543	2021-11-02	2021-09-03	3.5	3.85	3.50	3.7	0.003	0.54	0.0	0.04	10.52	0.00	2.134	6.34	2.13	3.2	96.8	0.0	0.60	0.61	0.80	1.97	3.7	0.003	0.57	0.0	0.04	13.10	0.00	2.069	9.22	0.35	4.9	95.1	0.0	1.16	1.02	0.61	0.79	1.48	10417	659	2	0	0	0	5253	logfile
✔	7PMW	13542	2021-11-02	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.004	0.57	0.0	0.04	11.62	0.00	1.995	11.04	0.00	4.3	95.7	0.0	0.80	1.21	0.58	0.76	—	10153	643	2	0	0	0	5123	logfile
✔	7S1W	24806	2021-11-24	2021-09-02	3.09	3.45	—	3.4	0.011	0.89	0.0	0.05	9.15	0.01	2.104	12.21	0.22	1.5	98.5	0.0	-1.53	0.77	0.86	5.52	3.4	0.005	0.64	0.0	0.04	13.97	0.00	2.112	9.15	0.43	2.2	97.8	0.0	-0.22	0.63	0.76	0.87	4.89	248700	31200	120	0	60	0	0	logfile
✔	7S0C	24786	2021-11-04	2021-08-30	3.25	3.47	—	3.5	0.012	0.92	2.0	0.06	13.34	0.01	1.762	13.58	0.19	5.1	94.7	0.2	-0.32	0.69	0.81	2.60	3.4	0.013	0.89	1.0	0.05	14.23	0.01	1.801	12.22	0.19	3.5	96.4	0.2	0.34	0.92	0.68	0.78	2.30	29598	3818	16	0	31	0	0	logfile
✔	7S0D	24787	2021-11-04	2021-08-30	3.5	3.80	—	3.7	0.005	0.88	2.0	0.05	13.46	0.01	1.969	18.29	0.13	6.0	93.4	0.6	-0.74	0.66	0.78	1.75	3.7	0.010	1.07	2.0	0.05	15.51	0.01	2.058	15.22	0.30	5.9	93.9	0.1	-0.52	0.57	0.67	0.80	1.65	33623	4383	9	0	0	0	0	logfile
✔	7S0E	24788	2021-11-01	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.74	0.0	0.05	13.06	0.00	2.128	19.30	0.00	8.5	91.3	0.2	-1.68	1.27	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✔	7RZ5	24751	2021-11-02	2021-08-27	3.3	3.18	—	3.4	0.009	2.21	0.0	0.05	15.98	0.01	2.368	1.91	0.35	3.5	96.5	0.0	-5.41	0.72	0.83	3.34	3.4	0.003	0.97	0.0	0.04	14.65	0.00	2.116	4.33	0.17	1.8	98.2	0.0	0.98	1.18	0.72	0.85	3.13	16770	2046	8	0	28	0	0	logfile

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