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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6iGM | 9668 | 2023-04-27 | 2018-09-25 | 4.0 | 4.14 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 10.13 | 0.01 | 1.054 | 20.78 | 2.70 | 7.3 | 91.6 | 1.1 | -4.30 | 0.70 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24257 | 3054 | 9 | 0 | 62 | 0 | 0 | logfile |
✔ | 6PVQ | 20497 | 2023-04-24 | 2019-07-21 | 4.75 | 4.68 | — | 4.6 | 0.008 | 1.32 | 0.0 | 0.06 | 13.01 | 0.01 | 2.244 | 9.74 | 1.15 | 14.4 | 85.2 | 0.4 | -5.23 | 0.66 | 0.75 | — | 4.5 | 0.003 | 0.81 | 0.0 | 0.04 | 13.47 | 0.00 | 2.171 | 14.10 | 0.00 | 11.8 | 88.0 | 0.2 | -2.25 | 1.10 | 0.67 | 0.77 | — | 17640 | 2160 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EJ2 | 31149 | 2023-04-25 | 2021-04-01 | 3.3 | 3.53 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.06 | 15.52 | 0.01 | 2.290 | 7.49 | 0.19 | 4.8 | 95.1 | 0.1 | -5.99 | 0.81 | 0.85 | 3.23 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.70 | 0.00 | 2.192 | 8.75 | 0.24 | 2.2 | 97.8 | 0.0 | -1.52 | 0.57 | 0.84 | 0.87 | 2.77 | 20968 | 2728 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2023-04-22 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7S8B | 24892 | 2023-04-25 | 2021-09-17 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21124 | 2448 | 8 | 0 | 46 | 0 | 0 | logfile |
✔ | 6D7S | 7824 | 2023-04-24 | 2018-04-25 | 4.34 | 4.44 | — | 4.3 | 0.007 | 1.16 | 0.0 | 0.06 | 11.86 | 0.01 | 2.248 | 7.14 | 1.17 | 12.1 | 87.8 | 0.2 | -5.61 | 0.77 | 0.79 | — | 4.3 | 0.003 | 0.84 | 0.0 | 0.04 | 13.76 | 0.00 | 2.227 | 15.13 | 0.15 | 10.2 | 89.8 | 0.0 | -1.25 | 1.42 | 0.77 | 0.80 | — | 19018 | 2372 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PPL | 20442 | 2023-04-20 | 2019-07-08 | 3.02 | 3.14 | — | 3.1 | 0.010 | 0.99 | 0.0 | 0.25 | 14.17 | 0.01 | 1.917 | 3.20 | 0.23 | 2.7 | 97.3 | 0.0 | -6.00 | 0.74 | 0.86 | 4.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8155 | 980 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2023-04-22 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.72 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 12.04 | 0.00 | 2.131 | 14.80 | 0.03 | 3.3 | 96.6 | 0.1 | -0.06 | 1.85 | 0.74 | 0.67 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JCU | 6617 | 2023-04-28 | 2016-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✔ | 6V8X | 21111 | 2023-04-27 | 2019-12-12 | 3.0 | 3.33 | — | 3.2 | 0.017 | 1.48 | 9.0 | 0.08 | 9.76 | 0.01 | 2.180 | 4.31 | 0.23 | 8.5 | 90.6 | 0.9 | -3.90 | 0.82 | 0.77 | 2.66 | 3.2 | 0.004 | 0.85 | 0.0 | 0.05 | 14.98 | 0.00 | 2.151 | 12.63 | 3.42 | 7.7 | 92.0 | 0.3 | -1.96 | 1.44 | 0.84 | 0.81 | 2.32 | 24825 | 2997 | 54 | 0 | 105 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-04-22 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2X | 9772 | 2023-04-19 | 2019-01-03 | 3.8 | 3.99 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.12 | 0.00 | 2.220 | 6.65 | 0.00 | 5.8 | 94.1 | 0.1 | -3.52 | 0.80 | 0.70 | 0.49 | 3.9 | 0.004 | 0.78 | 1.0 | 0.04 | 15.31 | 0.00 | 2.050 | 18.52 | 0.40 | 4.7 | 95.2 | 0.1 | -0.69 | 1.88 | 0.84 | 0.78 | 0.88 | 106176 | 13501 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DVZ | 8921 | 2023-04-25 | 2018-06-25 | 4.24 | 4.48 | — | 4.4 | 0.008 | 1.27 | 0.0 | 0.06 | 12.54 | 0.01 | 2.265 | 5.74 | 0.18 | 16.6 | 82.6 | 0.8 | -5.86 | 0.70 | 0.80 | — | 4.4 | 0.003 | 0.81 | 0.0 | 0.04 | 13.96 | 0.00 | 1.621 | 12.77 | 0.00 | 13.5 | 86.1 | 0.4 | -2.24 | 0.88 | 0.70 | 0.80 | — | 20976 | 2572 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7KFB | 22848 | 2023-04-22 | 2020-10-13 | 3.9 | 3.46 | — | 3.4 | 0.022 | 1.85 | 3.0 | 0.12 | 9.42 | 0.01 | 2.486 | 1.66 | 0.22 | 1.3 | 98.2 | 0.6 | 0.66 | 0.69 | 0.82 | 3.59 | 3.4 | 0.004 | 0.77 | 0.0 | 0.05 | 14.38 | 0.01 | 2.090 | 10.34 | 0.65 | 3.1 | 96.6 | 0.4 | -0.81 | 1.37 | 0.67 | 0.76 | 2.69 | 13458 | 1665 | 24 | 0 | 42 | 0 | 0 | logfile |
✔ | 6PW5 | 20499 | 2023-04-27 | 2019-07-22 | 3.45 | 3.53 | — | 3.5 | 0.013 | 1.39 | 0.0 | 0.07 | 14.18 | 0.01 | 2.327 | 4.42 | 1.61 | 11.6 | 87.6 | 0.8 | -6.95 | 0.76 | 0.85 | 3.30 | 3.5 | 0.005 | 0.77 | 0.0 | 0.04 | 16.46 | 0.00 | 2.174 | 9.65 | 0.80 | 9.5 | 90.2 | 0.4 | -1.21 | 1.17 | 0.76 | 0.87 | 2.20 | 24740 | 3032 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7DSH | 30833 | 2023-04-22 | 2020-12-31 | 3.67 | 3.52 | — | 3.6 | 0.007 | 1.08 | 1.0 | 0.06 | 11.35 | 0.01 | 2.099 | 6.74 | 0.46 | 9.5 | 90.4 | 0.1 | -6.04 | 0.67 | 0.76 | 3.10 | 3.6 | 0.004 | 0.71 | 0.0 | 0.05 | 14.22 | 0.00 | 2.164 | 13.77 | 0.31 | 9.0 | 90.9 | 0.1 | -2.97 | 0.59 | 0.68 | 0.77 | 2.17 | 12071 | 1500 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7M8L | 23719 | 2023-04-24 | 2021-03-30 | 3.9 | 3.46 | — | 3.4 | 0.021 | 1.84 | 3.0 | 0.12 | 9.77 | 0.01 | 2.378 | 1.84 | 0.15 | 1.7 | 97.7 | 0.7 | 0.75 | 0.83 | 0.83 | 3.62 | 3.3 | 0.003 | 0.74 | 0.0 | 0.05 | 14.94 | 0.00 | 2.121 | 10.22 | 0.71 | 3.7 | 96.1 | 0.2 | -0.46 | 1.70 | 0.82 | 0.79 | 2.72 | 18753 | 2349 | 30 | 0 | 42 | 0 | 0 | logfile |
✔ | 7TZ0 | 26201 | 2023-04-19 | 2022-02-15 | 4.17 | 3.79 | — | 4.4 | 0.003 | 0.62 | 0.0 | 0.04 | 12.38 | 0.01 | 2.265 | 10.65 | 0.00 | 7.9 | 92.1 | 0.0 | -1.73 | 0.41 | 0.61 | — | 4.0 | 0.004 | 0.77 | 0.0 | 0.05 | 12.39 | 0.00 | 2.106 | 22.26 | 0.35 | 12.2 | 87.8 | 0.0 | -2.19 | 1.41 | 0.44 | 0.64 | — | 2674 | 347 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PZA | 20530 | 2023-04-21 | 2019-07-31 | 3.74 | 3.92 | — | 3.9 | 0.008 | 1.06 | 0.0 | 0.06 | 10.72 | 0.01 | 2.252 | 3.22 | 0.00 | 8.0 | 92.0 | 0.0 | -4.29 | 0.51 | 0.50 | 0.87 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.90 | 0.00 | 2.228 | 9.43 | 0.58 | 5.0 | 95.0 | 0.0 | 0.79 | 1.25 | 0.62 | 0.79 | 0.90 | 9659 | 1441 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WJo | 32547 | 2023-04-22 | 2022-01-07 | 3.2 | 3.40 | — | 3.3 | 0.010 | 0.50 | 0.0 | 0.04 | 10.50 | 0.00 | 2.203 | 4.21 | 0.29 | 4.4 | 95.6 | 0.0 | 1.94 | 0.67 | 0.82 | 2.26 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.49 | 0.00 | 2.235 | 5.93 | 0.15 | 5.0 | 95.0 | 0.0 | 1.36 | 0.53 | 0.68 | 0.85 | 1.72 | 12932 | 1602 | 4 | 0 | 2 | 0 | 0 | logfile |