Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FLT	4276	2022-12-11	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.005	0.67	0.0	0.05	10.57	0.00	2.300	12.13	0.00	20.7	79.3	0.0	-5.03	2.04	0.41	0.79	4.07	8060	580	10	0	0	0	4100	logfile
✔	6SXo	10344	2022-12-13	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	6.10	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.59	0.0	0.03	16.64	0.00	2.121	10.83	0.70	3.3	96.7	0.0	-1.07	0.68	0.26	0.77	2.06	14894	973	8	326	0	0	0	logfile
✔	5KEL	8240	2022-12-14	2016-06-09	4.3	4.47	—	4.3	0.014	1.80	0.0	0.10	11.20	0.01	1.763	12.88	0.45	3.4	95.3	1.3	1.64	0.78	0.75	—	4.3	0.004	0.83	0.0	0.05	13.04	0.01	2.108	20.33	0.05	8.4	91.1	0.5	-0.90	1.68	0.80	0.81	—	19278	2409	33	0	45	0	0	logfile
✔	6KLL	0711	2022-12-12	2019-07-30	3.0	3.78	—	3.3	0.007	0.78	0.0	0.05	15.55	0.00	1.944	7.72	7.64	5.4	94.6	0.0	-3.74	0.68	0.87	3.00	3.3	0.003	0.60	0.0	0.05	15.79	0.00	1.901	6.26	2.39	3.9	96.1	0.0	-0.17	1.18	0.67	0.89	2.55	11748	1488	8	0	8	0	0	logfile
✔	6UKS	20811	2022-12-20	2019-10-05	3.2	2.36	—	3.2	0.009	0.88	0.0	0.05	14.20	0.01	2.007	2.74	0.32	8.4	91.6	0.0	-3.37	0.76	0.80	3.01	3.2	0.005	0.59	0.0	0.04	16.21	0.00	1.880	7.33	0.05	5.8	94.2	0.0	-0.71	1.08	0.77	0.84	3.12	40838	2534	14	0	14	0	20160	logfile
✔	6o0Y	0584	2022-12-12	2019-02-17	3.37	4.01	—	3.7	0.005	0.74	0.0	0.05	16.71	0.01	2.272	2.52	0.37	5.5	94.5	0.0	-4.11	0.85	0.88	2.93	3.7	0.004	0.58	0.0	0.04	16.91	0.00	2.074	6.10	0.12	4.8	95.2	0.0	-0.28	0.31	0.85	0.88	2.53	11828	1146	5	150	0	0	0	logfile
✔	6o0X	0583	2022-12-12	2019-02-17	3.28	3.97	—	3.6	0.005	0.74	0.0	0.04	16.67	0.01	2.317	2.65	0.14	6.2	93.8	0.0	-4.06	0.85	0.88	2.75	3.6	0.004	0.56	0.0	0.04	17.30	0.00	2.246	6.54	0.14	6.2	93.8	0.0	-0.24	0.89	0.84	0.88	2.78	11257	1112	5	150	0	0	0	logfile
✔	6o0Z	0585	2022-12-12	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.52	0.0	0.03	16.62	0.00	2.157	4.96	0.14	5.7	94.3	0.0	0.16	0.32	0.85	0.88	3.28	11912	1288	4	135	0	0	0	logfile
✔	6oKS	20103	2022-12-13	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.85	0.0	0.05	14.28	0.01	2.144	15.32	0.00	17.5	82.5	0.0	-4.73	2.22	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	5VA2	8651	2022-12-14	2017-03-24	3.8	5.57	—	4.2	0.008	1.08	0.0	0.06	12.47	0.00	1.607	9.81	1.08	7.7	90.7	1.6	-3.86	0.59	0.55	-0.36	4.2	0.003	0.91	0.0	0.05	15.68	0.00	2.166	20.43	0.35	4.7	95.0	0.3	-0.97	1.23	0.64	0.80	0.62	21970	2790	5	0	0	0	0	logfile
✔	6E0H	8948	2022-12-12	2018-07-06	4.05	4.18	—	4.0	0.009	1.16	0.0	0.06	11.25	0.01	2.262	5.16	0.40	7.6	92.4	0.0	-5.82	0.79	0.80	—	4.0	0.003	0.76	0.0	0.04	12.34	0.00	2.195	8.54	0.00	4.8	95.2	0.0	-0.48	0.90	0.79	0.80	—	9524	1172	4	0	4	0	0	logfile
✔	6KLN	0712	2022-12-12	2019-07-30	3.4	4.21	—	3.7	0.009	0.86	0.0	0.05	16.34	0.00	1.903	12.23	11.46	8.4	91.6	0.0	-4.65	0.70	0.88	2.12	3.7	0.004	0.65	0.0	0.04	15.14	0.00	1.900	8.58	0.16	4.8	95.2	0.0	-0.39	0.57	0.71	0.90	1.95	11748	1488	8	0	8	0	0	logfile
✔	6CND	7532	2022-12-22	2018-03-08	4.8	4.76	—	4.5	0.006	1.14	3.0	0.06	14.17	0.01	2.023	38.78	0.72	18.0	80.4	1.6	-5.18	0.75	0.67	—	4.5	0.004	0.87	0.0	0.05	15.23	0.00	2.036	24.31	0.04	12.7	86.4	0.9	-2.26	0.85	0.85	0.80	—	47836	5695	27	112	69	0	0	logfile
✔	6CNB	7530	2022-12-22	2018-03-08	4.1	4.34	—	4.2	0.007	1.15	2.0	0.06	13.97	0.01	1.836	32.45	0.60	17.4	81.2	1.4	-5.08	0.73	0.68	—	4.2	0.003	0.84	0.0	0.04	15.25	0.00	2.082	17.78	0.02	10.8	88.1	1.1	-2.13	1.49	0.83	0.81	—	47837	5695	27	112	69	0	0	logfile
✔	6CNC	7531	2022-12-22	2018-03-08	4.1	4.33	—	4.2	0.007	1.15	6.0	0.06	13.92	0.01	1.869	33.65	0.60	16.8	81.7	1.5	-5.05	0.74	0.69	—	4.2	0.003	0.83	0.0	0.05	15.32	0.01	2.140	17.57	0.02	11.2	87.8	1.0	-2.37	2.51	0.82	0.81	—	47836	5695	27	112	69	0	0	logfile
✔	6DBT	7849	2022-12-14	2018-05-03	4.3	4.48	—	4.3	0.005	0.82	0.0	0.04	24.07	0.01	1.860	22.20	0.12	9.2	90.6	0.2	-4.16	0.85	0.82	—	4.3	0.003	0.72	0.0	0.04	21.61	0.00	1.845	15.81	0.06	6.8	93.1	0.1	-1.10	1.74	0.85	0.83	—	19896	1930	10	222	6	0	0	logfile
✔	6CNF	7533	2022-12-22	2018-03-08	4.5	4.70	—	4.4	0.006	1.16	9.0	0.06	13.86	0.01	1.905	40.33	0.74	17.9	80.5	1.6	-5.23	0.74	0.65	—	4.4	0.004	0.88	0.0	0.05	15.16	0.01	2.024	23.60	0.00	12.3	86.8	0.9	-2.74	1.48	0.85	0.80	—	47675	5695	27	104	69	0	0	logfile
✔	6o2N	0609	2022-12-14	2019-02-24	3.7	3.87	—	3.8	0.006	0.93	0.0	0.06	15.00	0.01	2.266	4.97	0.55	9.7	90.3	0.0	-4.61	0.78	0.85	1.59	3.8	0.003	0.65	0.0	0.04	15.96	0.00	2.064	9.88	0.29	7.8	92.2	0.0	-2.63	0.45	0.78	0.85	1.22	72637	9218	14	0	0	0	0	logfile
✔	6o2o	0610	2022-12-14	2019-02-24	4.53	4.47	—	4.3	0.006	1.00	1.0	0.06	14.75	0.01	2.191	7.85	0.42	11.2	88.8	0.0	-4.31	0.78	0.80	—	4.3	0.004	0.72	0.0	0.05	13.77	0.00	2.013	15.63	0.01	12.0	88.0	0.0	-2.88	0.58	0.78	0.81	—	72637	9218	14	0	0	0	0	logfile
✔	5A6F	3063	2022-12-12	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.7	0.002	0.57	0.0	0.04	10.94	0.00	2.010	10.19	0.00	5.1	94.9	0.0	-1.00	0.99	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile

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