Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6iGM	9668	2023-04-27	2018-09-25	4.0	4.14	—	4.1	0.004	0.88	0.0	0.05	10.13	0.01	1.054	20.78	2.70	7.3	91.6	1.1	-4.30	0.70	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24257	3054	9	0	62	0	0	logfile
✔	6PVQ	20497	2023-04-24	2019-07-21	4.75	4.68	—	4.6	0.008	1.32	0.0	0.06	13.01	0.01	2.244	9.74	1.15	14.4	85.2	0.4	-5.23	0.66	0.75	—	4.5	0.003	0.81	0.0	0.04	13.47	0.00	2.171	14.10	0.00	11.8	88.0	0.2	-2.25	1.10	0.67	0.77	—	17640	2160	4	0	0	0	0	logfile
✔	7EJ2	31149	2023-04-25	2021-04-01	3.3	3.53	—	3.4	0.009	0.94	0.0	0.06	15.52	0.01	2.290	7.49	0.19	4.8	95.1	0.1	-5.99	0.81	0.85	3.23	3.4	0.003	0.67	0.0	0.04	15.70	0.00	2.192	8.75	0.24	2.2	97.8	0.0	-1.52	0.57	0.84	0.87	2.77	20968	2728	12	0	4	0	0	logfile
✘	5GW5	9541	2023-04-22	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	7S8B	24892	2023-04-25	2021-09-17	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21124	2448	8	0	46	0	0	logfile
✔	6D7S	7824	2023-04-24	2018-04-25	4.34	4.44	—	4.3	0.007	1.16	0.0	0.06	11.86	0.01	2.248	7.14	1.17	12.1	87.8	0.2	-5.61	0.77	0.79	—	4.3	0.003	0.84	0.0	0.04	13.76	0.00	2.227	15.13	0.15	10.2	89.8	0.0	-1.25	1.42	0.77	0.80	—	19018	2372	4	0	0	0	0	logfile
✘	6PPL	20442	2023-04-20	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	14.17	0.01	1.917	3.20	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8155	980	6	0	4	0	0	logfile
✔	6KS7	0759	2023-04-22	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✘	3JCU	6617	2023-04-28	2016-03-10	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile
✔	6V8X	21111	2023-04-27	2019-12-12	3.0	3.33	—	3.2	0.017	1.48	9.0	0.08	9.76	0.01	2.180	4.31	0.23	8.5	90.6	0.9	-3.90	0.82	0.77	2.66	3.2	0.004	0.85	0.0	0.05	14.98	0.00	2.151	12.63	3.42	7.7	92.0	0.3	-1.96	1.44	0.84	0.81	2.32	24825	2997	54	0	105	0	0	logfile
✘	5GW4	9540	2023-04-22	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	6J2X	9772	2023-04-19	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.65	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.78	1.0	0.04	15.31	0.00	2.050	18.52	0.40	4.7	95.2	0.1	-0.69	1.88	0.84	0.78	0.88	106176	13501	47	0	0	0	0	logfile
✔	6DVZ	8921	2023-04-25	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.54	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.81	0.0	0.04	13.96	0.00	1.621	12.77	0.00	13.5	86.1	0.4	-2.24	0.88	0.70	0.80	—	20976	2572	8	0	12	0	0	logfile
✔	7KFB	22848	2023-04-22	2020-10-13	3.9	3.46	—	3.4	0.022	1.85	3.0	0.12	9.42	0.01	2.486	1.66	0.22	1.3	98.2	0.6	0.66	0.69	0.82	3.59	3.4	0.004	0.77	0.0	0.05	14.38	0.01	2.090	10.34	0.65	3.1	96.6	0.4	-0.81	1.37	0.67	0.76	2.69	13458	1665	24	0	42	0	0	logfile
✔	6PW5	20499	2023-04-27	2019-07-22	3.45	3.53	—	3.5	0.013	1.39	0.0	0.07	14.18	0.01	2.327	4.42	1.61	11.6	87.6	0.8	-6.95	0.76	0.85	3.30	3.5	0.005	0.77	0.0	0.04	16.46	0.00	2.174	9.65	0.80	9.5	90.2	0.4	-1.21	1.17	0.76	0.87	2.20	24740	3032	8	0	12	0	0	logfile
✔	7DSH	30833	2023-04-22	2020-12-31	3.67	3.52	—	3.6	0.007	1.08	1.0	0.06	11.35	0.01	2.099	6.74	0.46	9.5	90.4	0.1	-6.04	0.67	0.76	3.10	3.6	0.004	0.71	0.0	0.05	14.22	0.00	2.164	13.77	0.31	9.0	90.9	0.1	-2.97	0.59	0.68	0.77	2.17	12071	1500	4	0	5	0	0	logfile
✔	7M8L	23719	2023-04-24	2021-03-30	3.9	3.46	—	3.4	0.021	1.84	3.0	0.12	9.77	0.01	2.378	1.84	0.15	1.7	97.7	0.7	0.75	0.83	0.83	3.62	3.3	0.003	0.74	0.0	0.05	14.94	0.00	2.121	10.22	0.71	3.7	96.1	0.2	-0.46	1.70	0.82	0.79	2.72	18753	2349	30	0	42	0	0	logfile
✔	7TZ0	26201	2023-04-19	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.004	0.77	0.0	0.05	12.39	0.00	2.106	22.26	0.35	12.2	87.8	0.0	-2.19	1.41	0.44	0.64	—	2674	347	2	0	0	0	0	logfile
✔	6PZA	20530	2023-04-21	2019-07-31	3.74	3.92	—	3.9	0.008	1.06	0.0	0.06	10.72	0.01	2.252	3.22	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	3.8	0.003	0.68	0.0	0.04	14.90	0.00	2.228	9.43	0.58	5.0	95.0	0.0	0.79	1.25	0.62	0.79	0.90	9659	1441	3	0	2	0	0	logfile
✔	7WJo	32547	2023-04-22	2022-01-07	3.2	3.40	—	3.3	0.010	0.50	0.0	0.04	10.50	0.00	2.203	4.21	0.29	4.4	95.6	0.0	1.94	0.67	0.82	2.26	3.4	0.003	0.56	0.0	0.04	14.49	0.00	2.235	5.93	0.15	5.0	95.0	0.0	1.36	0.53	0.68	0.85	1.72	12932	1602	4	0	2	0	0	logfile

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