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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FLT | 4276 | 2022-12-11 | 2018-01-28 | 3.42 | 3.32 | — | 3.5 | 0.014 | 1.15 | 0.0 | 0.06 | 8.31 | 0.00 | 2.330 | 9.03 | 0.00 | 14.3 | 85.7 | 0.0 | -5.36 | 0.44 | 0.74 | 2.91 | 3.5 | 0.005 | 0.67 | 0.0 | 0.05 | 10.57 | 0.00 | 2.300 | 12.13 | 0.00 | 20.7 | 79.3 | 0.0 | -5.03 | 2.04 | 0.41 | 0.79 | 4.07 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 6SXo | 10344 | 2022-12-13 | 2019-09-26 | 3.3 | 3.36 | — | 3.3 | 0.009 | 1.35 | 0.0 | 0.07 | 16.45 | 0.01 | 2.142 | 6.10 | 1.16 | 4.7 | 95.3 | 0.0 | -4.39 | 0.26 | 0.72 | 2.92 | 3.3 | 0.003 | 0.59 | 0.0 | 0.03 | 16.64 | 0.00 | 2.121 | 10.83 | 0.70 | 3.3 | 96.7 | 0.0 | -1.07 | 0.68 | 0.26 | 0.77 | 2.06 | 14894 | 973 | 8 | 326 | 0 | 0 | 0 | logfile |
✔ | 5KEL | 8240 | 2022-12-14 | 2016-06-09 | 4.3 | 4.47 | — | 4.3 | 0.014 | 1.80 | 0.0 | 0.10 | 11.20 | 0.01 | 1.763 | 12.88 | 0.45 | 3.4 | 95.3 | 1.3 | 1.64 | 0.78 | 0.75 | — | 4.3 | 0.004 | 0.83 | 0.0 | 0.05 | 13.04 | 0.01 | 2.108 | 20.33 | 0.05 | 8.4 | 91.1 | 0.5 | -0.90 | 1.68 | 0.80 | 0.81 | — | 19278 | 2409 | 33 | 0 | 45 | 0 | 0 | logfile |
✔ | 6KLL | 0711 | 2022-12-12 | 2019-07-30 | 3.0 | 3.78 | — | 3.3 | 0.007 | 0.78 | 0.0 | 0.05 | 15.55 | 0.00 | 1.944 | 7.72 | 7.64 | 5.4 | 94.6 | 0.0 | -3.74 | 0.68 | 0.87 | 3.00 | 3.3 | 0.003 | 0.60 | 0.0 | 0.05 | 15.79 | 0.00 | 1.901 | 6.26 | 2.39 | 3.9 | 96.1 | 0.0 | -0.17 | 1.18 | 0.67 | 0.89 | 2.55 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6UKS | 20811 | 2022-12-20 | 2019-10-05 | 3.2 | 2.36 | — | 3.2 | 0.009 | 0.88 | 0.0 | 0.05 | 14.20 | 0.01 | 2.007 | 2.74 | 0.32 | 8.4 | 91.6 | 0.0 | -3.37 | 0.76 | 0.80 | 3.01 | 3.2 | 0.005 | 0.59 | 0.0 | 0.04 | 16.21 | 0.00 | 1.880 | 7.33 | 0.05 | 5.8 | 94.2 | 0.0 | -0.71 | 1.08 | 0.77 | 0.84 | 3.12 | 40838 | 2534 | 14 | 0 | 14 | 0 | 20160 | logfile |
✔ | 6o0Y | 0584 | 2022-12-12 | 2019-02-17 | 3.37 | 4.01 | — | 3.7 | 0.005 | 0.74 | 0.0 | 0.05 | 16.71 | 0.01 | 2.272 | 2.52 | 0.37 | 5.5 | 94.5 | 0.0 | -4.11 | 0.85 | 0.88 | 2.93 | 3.7 | 0.004 | 0.58 | 0.0 | 0.04 | 16.91 | 0.00 | 2.074 | 6.10 | 0.12 | 4.8 | 95.2 | 0.0 | -0.28 | 0.31 | 0.85 | 0.88 | 2.53 | 11828 | 1146 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 6o0X | 0583 | 2022-12-12 | 2019-02-17 | 3.28 | 3.97 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.04 | 16.67 | 0.01 | 2.317 | 2.65 | 0.14 | 6.2 | 93.8 | 0.0 | -4.06 | 0.85 | 0.88 | 2.75 | 3.6 | 0.004 | 0.56 | 0.0 | 0.04 | 17.30 | 0.00 | 2.246 | 6.54 | 0.14 | 6.2 | 93.8 | 0.0 | -0.24 | 0.89 | 0.84 | 0.88 | 2.78 | 11257 | 1112 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 6o0Z | 0585 | 2022-12-12 | 2019-02-17 | 3.3 | 3.94 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.04 | 16.28 | 0.00 | 2.302 | 2.58 | 0.27 | 6.3 | 93.7 | 0.0 | -4.11 | 0.86 | 0.88 | 3.46 | 3.6 | 0.002 | 0.52 | 0.0 | 0.03 | 16.62 | 0.00 | 2.157 | 4.96 | 0.14 | 5.7 | 94.3 | 0.0 | 0.16 | 0.32 | 0.85 | 0.88 | 3.28 | 11912 | 1288 | 4 | 135 | 0 | 0 | 0 | logfile |
✔ | 6oKS | 20103 | 2022-12-13 | 2019-04-15 | 4.2 | 4.44 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 2.299 | 5.88 | 9.80 | 18.3 | 81.7 | 0.0 | -5.50 | 0.78 | 0.81 | — | 4.3 | 0.004 | 0.85 | 0.0 | 0.05 | 14.28 | 0.01 | 2.144 | 15.32 | 0.00 | 17.5 | 82.5 | 0.0 | -4.73 | 2.22 | 0.79 | 0.82 | — | 13244 | 1610 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VA2 | 8651 | 2022-12-14 | 2017-03-24 | 3.8 | 5.57 | — | 4.2 | 0.008 | 1.08 | 0.0 | 0.06 | 12.47 | 0.00 | 1.607 | 9.81 | 1.08 | 7.7 | 90.7 | 1.6 | -3.86 | 0.59 | 0.55 | -0.36 | 4.2 | 0.003 | 0.91 | 0.0 | 0.05 | 15.68 | 0.00 | 2.166 | 20.43 | 0.35 | 4.7 | 95.0 | 0.3 | -0.97 | 1.23 | 0.64 | 0.80 | 0.62 | 21970 | 2790 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E0H | 8948 | 2022-12-12 | 2018-07-06 | 4.05 | 4.18 | — | 4.0 | 0.009 | 1.16 | 0.0 | 0.06 | 11.25 | 0.01 | 2.262 | 5.16 | 0.40 | 7.6 | 92.4 | 0.0 | -5.82 | 0.79 | 0.80 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 12.34 | 0.00 | 2.195 | 8.54 | 0.00 | 4.8 | 95.2 | 0.0 | -0.48 | 0.90 | 0.79 | 0.80 | — | 9524 | 1172 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6KLN | 0712 | 2022-12-12 | 2019-07-30 | 3.4 | 4.21 | — | 3.7 | 0.009 | 0.86 | 0.0 | 0.05 | 16.34 | 0.00 | 1.903 | 12.23 | 11.46 | 8.4 | 91.6 | 0.0 | -4.65 | 0.70 | 0.88 | 2.12 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 15.14 | 0.00 | 1.900 | 8.58 | 0.16 | 4.8 | 95.2 | 0.0 | -0.39 | 0.57 | 0.71 | 0.90 | 1.95 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6CND | 7532 | 2022-12-22 | 2018-03-08 | 4.8 | 4.76 | — | 4.5 | 0.006 | 1.14 | 3.0 | 0.06 | 14.17 | 0.01 | 2.023 | 38.78 | 0.72 | 18.0 | 80.4 | 1.6 | -5.18 | 0.75 | 0.67 | — | 4.5 | 0.004 | 0.87 | 0.0 | 0.05 | 15.23 | 0.00 | 2.036 | 24.31 | 0.04 | 12.7 | 86.4 | 0.9 | -2.26 | 0.85 | 0.85 | 0.80 | — | 47836 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 6CNB | 7530 | 2022-12-22 | 2018-03-08 | 4.1 | 4.34 | — | 4.2 | 0.007 | 1.15 | 2.0 | 0.06 | 13.97 | 0.01 | 1.836 | 32.45 | 0.60 | 17.4 | 81.2 | 1.4 | -5.08 | 0.73 | 0.68 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.04 | 15.25 | 0.00 | 2.082 | 17.78 | 0.02 | 10.8 | 88.1 | 1.1 | -2.13 | 1.49 | 0.83 | 0.81 | — | 47837 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 6CNC | 7531 | 2022-12-22 | 2018-03-08 | 4.1 | 4.33 | — | 4.2 | 0.007 | 1.15 | 6.0 | 0.06 | 13.92 | 0.01 | 1.869 | 33.65 | 0.60 | 16.8 | 81.7 | 1.5 | -5.05 | 0.74 | 0.69 | — | 4.2 | 0.003 | 0.83 | 0.0 | 0.05 | 15.32 | 0.01 | 2.140 | 17.57 | 0.02 | 11.2 | 87.8 | 1.0 | -2.37 | 2.51 | 0.82 | 0.81 | — | 47836 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 6DBT | 7849 | 2022-12-14 | 2018-05-03 | 4.3 | 4.48 | — | 4.3 | 0.005 | 0.82 | 0.0 | 0.04 | 24.07 | 0.01 | 1.860 | 22.20 | 0.12 | 9.2 | 90.6 | 0.2 | -4.16 | 0.85 | 0.82 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 21.61 | 0.00 | 1.845 | 15.81 | 0.06 | 6.8 | 93.1 | 0.1 | -1.10 | 1.74 | 0.85 | 0.83 | — | 19896 | 1930 | 10 | 222 | 6 | 0 | 0 | logfile |
✔ | 6CNF | 7533 | 2022-12-22 | 2018-03-08 | 4.5 | 4.70 | — | 4.4 | 0.006 | 1.16 | 9.0 | 0.06 | 13.86 | 0.01 | 1.905 | 40.33 | 0.74 | 17.9 | 80.5 | 1.6 | -5.23 | 0.74 | 0.65 | — | 4.4 | 0.004 | 0.88 | 0.0 | 0.05 | 15.16 | 0.01 | 2.024 | 23.60 | 0.00 | 12.3 | 86.8 | 0.9 | -2.74 | 1.48 | 0.85 | 0.80 | — | 47675 | 5695 | 27 | 104 | 69 | 0 | 0 | logfile |
✔ | 6o2N | 0609 | 2022-12-14 | 2019-02-24 | 3.7 | 3.87 | — | 3.8 | 0.006 | 0.93 | 0.0 | 0.06 | 15.00 | 0.01 | 2.266 | 4.97 | 0.55 | 9.7 | 90.3 | 0.0 | -4.61 | 0.78 | 0.85 | 1.59 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 15.96 | 0.00 | 2.064 | 9.88 | 0.29 | 7.8 | 92.2 | 0.0 | -2.63 | 0.45 | 0.78 | 0.85 | 1.22 | 72637 | 9218 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o2o | 0610 | 2022-12-14 | 2019-02-24 | 4.53 | 4.47 | — | 4.3 | 0.006 | 1.00 | 1.0 | 0.06 | 14.75 | 0.01 | 2.191 | 7.85 | 0.42 | 11.2 | 88.8 | 0.0 | -4.31 | 0.78 | 0.80 | — | 4.3 | 0.004 | 0.72 | 0.0 | 0.05 | 13.77 | 0.00 | 2.013 | 15.63 | 0.01 | 12.0 | 88.0 | 0.0 | -2.88 | 0.58 | 0.78 | 0.81 | — | 72637 | 9218 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A6F | 3063 | 2022-12-12 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.7 | 0.002 | 0.57 | 0.0 | 0.04 | 10.94 | 0.00 | 2.010 | 10.19 | 0.00 | 5.1 | 94.9 | 0.0 | -1.00 | 0.99 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |