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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6BGo | 7098 | 2022-12-22 | 2017-10-29 | 4.2 | 4.71 | — | 4.0 | 0.007 | 0.99 | 0.0 | 0.05 | 12.93 | 0.01 | 1.245 | 13.74 | 1.01 | 3.0 | 96.9 | 0.1 | -0.26 | 0.83 | 0.75 | — | 4.0 | 0.002 | 0.59 | 0.0 | 0.04 | 12.80 | 0.00 | 2.076 | 6.67 | 0.06 | 2.7 | 97.3 | 0.0 | 2.09 | 1.57 | 0.90 | 0.85 | — | 46500 | 6170 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEF | 20020 | 2022-12-22 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.21 | 0.0 | 0.05 | 6.00 | 0.00 | 2.198 | 8.14 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.49 | 0.80 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 5LDW | 4040 | 2022-12-22 | 2016-06-28 | 4.27 | 4.38 | 4.19 | 4.3 | 0.009 | 1.42 | 20.0 | 1.11 | 14.68 | 0.01 | 1.608 | 7.48 | 3.32 | 8.5 | 88.2 | 3.3 | -4.87 | 0.69 | 0.73 | — | 4.3 | 0.009 | 1.85 | 0.0 | 0.33 | 12.94 | 0.00 | 2.039 | 16.67 | 0.00 | 8.9 | 90.1 | 1.1 | -1.32 | 1.63 | 0.71 | 0.77 | — | 51181 | 5866 | 52 | 0 | 1936 | 0 | 0 | logfile |
✔ | 6BGL | 7097 | 2022-12-22 | 2017-10-28 | 3.4 | 4.36 | — | 3.9 | 0.007 | 0.98 | 0.0 | 0.05 | 12.92 | 0.01 | 1.244 | 14.67 | 0.90 | 2.8 | 97.2 | 0.0 | -0.20 | 0.86 | 0.80 | 1.75 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 15.14 | 0.00 | 2.142 | 7.58 | 0.21 | 2.2 | 97.8 | 0.0 | 1.89 | 1.10 | 0.87 | 0.84 | 2.00 | 46618 | 6174 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 6K61 | 9918 | 2022-12-22 | 2019-05-31 | 2.37 | 2.37 | — | 2.4 | 0.012 | 1.43 | 0.0 | 0.08 | 18.22 | 0.02 | 1.219 | 8.00 | 0.96 | 3.1 | 96.7 | 0.1 | -2.65 | 0.60 | 0.88 | 5.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49283 | 4542 | 44 | 0 | 259 | 0 | 0 | logfile |
✘ | 6iGZ | 9670 | 2022-12-22 | 2018-09-27 | 3.49 | 3.60 | — | 3.5 | 0.018 | 1.56 | 0.0 | 0.09 | 20.24 | 0.01 | 1.206 | 31.97 | 0.33 | 9.3 | 90.1 | 0.6 | -4.96 | 0.68 | 0.73 | 3.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51585 | 4518 | 44 | 0 | 320 | 0 | 0 | logfile |
✔ | 6R70 | 4738 | 2022-12-22 | 2019-03-28 | 3.5 | 3.64 | — | 3.6 | 0.008 | 1.07 | 3.0 | 0.06 | 12.89 | 0.01 | 2.135 | 4.86 | 0.52 | 3.7 | 96.1 | 0.3 | -2.76 | 0.79 | 0.79 | 2.26 | 3.6 | 0.005 | 0.77 | 0.0 | 0.05 | 15.51 | 0.00 | 2.125 | 13.59 | 0.67 | 4.6 | 95.4 | 0.0 | -0.19 | 1.29 | 0.79 | 0.80 | 1.78 | 48581 | 6211 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UQK | 20849 | 2022-12-22 | 2019-10-20 | 3.77 | 4.46 | 4.11 | 4.3 | 0.003 | 0.53 | 0.0 | 0.04 | 9.91 | 0.00 | 2.196 | 0.22 | 0.00 | 5.0 | 95.0 | 0.0 | -1.84 | 0.74 | 0.78 | 1.71 | 4.3 | 0.003 | 0.60 | 0.0 | 0.04 | 12.63 | 0.00 | 2.251 | 4.46 | 0.41 | 7.5 | 92.5 | 0.0 | 1.15 | 0.61 | 0.75 | 0.81 | 1.93 | 51567 | 8032 | 8 | 0 | 188 | 0 | 0 | logfile |
✔ | 5LC5 | 4032 | 2022-12-22 | 2016-06-19 | 4.35 | 4.47 | 4.28 | 4.3 | 0.009 | 1.47 | 18.0 | 1.11 | 14.59 | 0.01 | 1.587 | 7.31 | 3.67 | 8.6 | 87.7 | 3.7 | -4.81 | 0.69 | 0.71 | — | 4.3 | 0.010 | 1.92 | 0.0 | 0.33 | 13.18 | 0.01 | 2.032 | 22.08 | 0.00 | 11.2 | 87.9 | 0.9 | -1.81 | 1.68 | 0.71 | 0.78 | — | 51718 | 5916 | 52 | 0 | 1988 | 0 | 0 | logfile |
✔ | 5o31 | 3731 | 2022-12-22 | 2017-05-23 | 4.13 | 4.19 | — | 4.1 | 0.008 | 1.37 | 11.0 | 1.11 | 13.96 | 0.01 | 2.512 | 4.01 | 2.22 | 9.3 | 88.3 | 2.4 | -4.78 | 0.70 | 0.73 | — | 4.1 | 0.010 | 1.84 | 0.0 | 0.33 | 12.95 | 0.01 | 2.028 | 16.95 | 0.08 | 10.6 | 89.1 | 0.4 | -1.69 | 2.18 | 0.71 | 0.77 | — | 52703 | 7006 | 52 | 0 | 816 | 0 | 0 | logfile |
✔ | 6T9i | 10412 | 2022-12-22 | 2019-10-28 | 3.9 | 3.67 | — | 3.4 | 0.007 | 1.00 | 0.0 | 0.06 | 15.35 | 0.01 | 1.047 | 6.73 | 0.97 | 7.5 | 92.5 | 0.1 | -4.38 | 0.80 | 0.74 | 1.54 | 3.4 | 0.003 | 0.70 | 0.0 | 0.04 | 16.40 | 0.00 | 1.969 | 11.75 | 0.15 | 6.6 | 93.4 | 0.0 | -0.23 | 1.26 | 0.81 | 0.77 | 1.19 | 48821 | 6047 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C3o | 7338 | 2022-12-22 | 2018-01-10 | 3.9 | 3.58 | — | 3.6 | 0.006 | 0.92 | 0.0 | 0.05 | 10.43 | 0.00 | 1.661 | 15.44 | 0.32 | 7.4 | 92.6 | 0.0 | -3.06 | 0.40 | 0.56 | 1.23 | 3.5 | 0.004 | 0.77 | 0.0 | 0.04 | 15.55 | 0.00 | 1.937 | 13.78 | 0.86 | 5.1 | 94.9 | 0.0 | 0.22 | 2.03 | 0.63 | 0.71 | 1.15 | 49055 | 6472 | 16 | 0 | 23 | 0 | 0 | logfile |
✔ | 6CND | 7532 | 2022-12-22 | 2018-03-08 | 4.8 | 4.76 | — | 4.5 | 0.006 | 1.14 | 3.0 | 0.06 | 14.17 | 0.01 | 2.023 | 38.78 | 0.72 | 18.0 | 80.4 | 1.6 | -5.18 | 0.75 | 0.67 | — | 4.5 | 0.004 | 0.87 | 0.0 | 0.05 | 15.23 | 0.00 | 2.036 | 24.31 | 0.04 | 12.7 | 86.4 | 0.9 | -2.26 | 0.85 | 0.85 | 0.80 | — | 47836 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 6CNB | 7530 | 2022-12-22 | 2018-03-08 | 4.1 | 4.34 | — | 4.2 | 0.007 | 1.15 | 2.0 | 0.06 | 13.97 | 0.01 | 1.836 | 32.45 | 0.60 | 17.4 | 81.2 | 1.4 | -5.08 | 0.73 | 0.68 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.04 | 15.25 | 0.00 | 2.082 | 17.78 | 0.02 | 10.8 | 88.1 | 1.1 | -2.13 | 1.49 | 0.83 | 0.81 | — | 47837 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 6CNC | 7531 | 2022-12-22 | 2018-03-08 | 4.1 | 4.33 | — | 4.2 | 0.007 | 1.15 | 6.0 | 0.06 | 13.92 | 0.01 | 1.869 | 33.65 | 0.60 | 16.8 | 81.7 | 1.5 | -5.05 | 0.74 | 0.69 | — | 4.2 | 0.003 | 0.83 | 0.0 | 0.05 | 15.32 | 0.01 | 2.140 | 17.57 | 0.02 | 11.2 | 87.8 | 1.0 | -2.37 | 2.51 | 0.82 | 0.81 | — | 47836 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✘ | 6ADQ | 9610 | 2022-12-22 | 2018-08-01 | 3.5 | 3.66 | 3.51 | 3.6 | 0.018 | 1.74 | 0.0 | 0.07 | 16.83 | 0.03 | 1.170 | 9.77 | 0.51 | 9.8 | 90.1 | 0.1 | -4.62 | 0.67 | 0.81 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48946 | 6026 | 44 | 0 | 74 | 0 | 0 | logfile |
✔ | 6CNF | 7533 | 2022-12-22 | 2018-03-08 | 4.5 | 4.70 | — | 4.4 | 0.006 | 1.16 | 9.0 | 0.06 | 13.86 | 0.01 | 1.905 | 40.33 | 0.74 | 17.9 | 80.5 | 1.6 | -5.23 | 0.74 | 0.65 | — | 4.4 | 0.004 | 0.88 | 0.0 | 0.05 | 15.16 | 0.01 | 2.024 | 23.60 | 0.00 | 12.3 | 86.8 | 0.9 | -2.74 | 1.48 | 0.85 | 0.80 | — | 47675 | 5695 | 27 | 104 | 69 | 0 | 0 | logfile |
✔ | 5N61 | 3593 | 2022-12-22 | 2017-02-14 | 3.4 | 3.59 | — | 3.5 | 0.012 | 1.19 | 0.0 | 0.05 | 14.76 | 0.01 | 0.343 | 36.53 | 7.23 | 9.1 | 88.8 | 2.1 | -4.08 | 0.72 | 0.65 | 2.60 | 3.5 | 0.003 | 0.75 | 0.0 | 0.05 | 16.28 | 0.01 | 1.983 | 15.32 | 0.34 | 5.6 | 94.1 | 0.2 | -0.45 | 2.75 | 0.81 | 0.84 | 1.97 | 48547 | 5887 | 27 | 79 | 9 | 0 | 0 | logfile |
✔ | 6TE8 | 10476 | 2022-12-22 | 2019-11-11 | 3.32 | 3.40 | — | 3.3 | 0.004 | 0.72 | 0.0 | 0.05 | 13.24 | 0.00 | 2.170 | 15.63 | 0.98 | 8.7 | 90.9 | 0.4 | -5.43 | 0.82 | 0.87 | 2.69 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 15.27 | 0.00 | 2.138 | 13.22 | 0.72 | 6.6 | 93.4 | 0.0 | -1.02 | 1.61 | 0.80 | 0.88 | 1.95 | 49164 | 6504 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TFJ | 10492 | 2022-12-22 | 2019-11-14 | 2.9 | 3.01 | 2.90 | 3.0 | 0.002 | 0.43 | 0.0 | 0.04 | 9.89 | 0.00 | 2.013 | 6.81 | 0.11 | 8.4 | 91.6 | 0.0 | -2.53 | 0.70 | 0.73 | 2.51 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 15.02 | 0.00 | 1.958 | 8.87 | 1.38 | 7.0 | 93.0 | 0.1 | -0.74 | 1.32 | 0.70 | 0.76 | 2.18 | 48340 | 3058 | 4 | 0 | 0 | 0 | 24098 | logfile |