Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BGo	7098	2022-12-22	2017-10-29	4.2	4.71	—	4.0	0.007	0.99	0.0	0.05	12.93	0.01	1.245	13.74	1.01	3.0	96.9	0.1	-0.26	0.83	0.75	—	4.0	0.002	0.59	0.0	0.04	12.80	0.00	2.076	6.67	0.06	2.7	97.3	0.0	2.09	1.57	0.90	0.85	—	46500	6170	35	0	0	0	0	logfile
✔	6oEF	20020	2022-12-22	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.21	0.0	0.05	6.00	0.00	2.198	8.14	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	5LDW	4040	2022-12-22	2016-06-28	4.27	4.38	4.19	4.3	0.009	1.42	20.0	1.11	14.68	0.01	1.608	7.48	3.32	8.5	88.2	3.3	-4.87	0.69	0.73	—	4.3	0.009	1.85	0.0	0.33	12.94	0.00	2.039	16.67	0.00	8.9	90.1	1.1	-1.32	1.63	0.71	0.77	—	51181	5866	52	0	1936	0	0	logfile
✔	6BGL	7097	2022-12-22	2017-10-28	3.4	4.36	—	3.9	0.007	0.98	0.0	0.05	12.92	0.01	1.244	14.67	0.90	2.8	97.2	0.0	-0.20	0.86	0.80	1.75	3.9	0.003	0.73	0.0	0.04	15.14	0.00	2.142	7.58	0.21	2.2	97.8	0.0	1.89	1.10	0.87	0.84	2.00	46618	6174	42	0	0	0	0	logfile
✘	6K61	9918	2022-12-22	2019-05-31	2.37	2.37	—	2.4	0.012	1.43	0.0	0.08	18.22	0.02	1.219	8.00	0.96	3.1	96.7	0.1	-2.65	0.60	0.88	5.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49283	4542	44	0	259	0	0	logfile
✘	6iGZ	9670	2022-12-22	2018-09-27	3.49	3.60	—	3.5	0.018	1.56	0.0	0.09	20.24	0.01	1.206	31.97	0.33	9.3	90.1	0.6	-4.96	0.68	0.73	3.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51585	4518	44	0	320	0	0	logfile
✔	6R70	4738	2022-12-22	2019-03-28	3.5	3.64	—	3.6	0.008	1.07	3.0	0.06	12.89	0.01	2.135	4.86	0.52	3.7	96.1	0.3	-2.76	0.79	0.79	2.26	3.6	0.005	0.77	0.0	0.05	15.51	0.00	2.125	13.59	0.67	4.6	95.4	0.0	-0.19	1.29	0.79	0.80	1.78	48581	6211	28	0	0	0	0	logfile
✔	6UQK	20849	2022-12-22	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.003	0.60	0.0	0.04	12.63	0.00	2.251	4.46	0.41	7.5	92.5	0.0	1.15	0.61	0.75	0.81	1.93	51567	8032	8	0	188	0	0	logfile
✔	5LC5	4032	2022-12-22	2016-06-19	4.35	4.47	4.28	4.3	0.009	1.47	18.0	1.11	14.59	0.01	1.587	7.31	3.67	8.6	87.7	3.7	-4.81	0.69	0.71	—	4.3	0.010	1.92	0.0	0.33	13.18	0.01	2.032	22.08	0.00	11.2	87.9	0.9	-1.81	1.68	0.71	0.78	—	51718	5916	52	0	1988	0	0	logfile
✔	5o31	3731	2022-12-22	2017-05-23	4.13	4.19	—	4.1	0.008	1.37	11.0	1.11	13.96	0.01	2.512	4.01	2.22	9.3	88.3	2.4	-4.78	0.70	0.73	—	4.1	0.010	1.84	0.0	0.33	12.95	0.01	2.028	16.95	0.08	10.6	89.1	0.4	-1.69	2.18	0.71	0.77	—	52703	7006	52	0	816	0	0	logfile
✔	6T9i	10412	2022-12-22	2019-10-28	3.9	3.67	—	3.4	0.007	1.00	0.0	0.06	15.35	0.01	1.047	6.73	0.97	7.5	92.5	0.1	-4.38	0.80	0.74	1.54	3.4	0.003	0.70	0.0	0.04	16.40	0.00	1.969	11.75	0.15	6.6	93.4	0.0	-0.23	1.26	0.81	0.77	1.19	48821	6047	12	0	0	0	0	logfile
✔	6C3o	7338	2022-12-22	2018-01-10	3.9	3.58	—	3.6	0.006	0.92	0.0	0.05	10.43	0.00	1.661	15.44	0.32	7.4	92.6	0.0	-3.06	0.40	0.56	1.23	3.5	0.004	0.77	0.0	0.04	15.55	0.00	1.937	13.78	0.86	5.1	94.9	0.0	0.22	2.03	0.63	0.71	1.15	49055	6472	16	0	23	0	0	logfile
✔	6CND	7532	2022-12-22	2018-03-08	4.8	4.76	—	4.5	0.006	1.14	3.0	0.06	14.17	0.01	2.023	38.78	0.72	18.0	80.4	1.6	-5.18	0.75	0.67	—	4.5	0.004	0.87	0.0	0.05	15.23	0.00	2.036	24.31	0.04	12.7	86.4	0.9	-2.26	0.85	0.85	0.80	—	47836	5695	27	112	69	0	0	logfile
✔	6CNB	7530	2022-12-22	2018-03-08	4.1	4.34	—	4.2	0.007	1.15	2.0	0.06	13.97	0.01	1.836	32.45	0.60	17.4	81.2	1.4	-5.08	0.73	0.68	—	4.2	0.003	0.84	0.0	0.04	15.25	0.00	2.082	17.78	0.02	10.8	88.1	1.1	-2.13	1.49	0.83	0.81	—	47837	5695	27	112	69	0	0	logfile
✔	6CNC	7531	2022-12-22	2018-03-08	4.1	4.33	—	4.2	0.007	1.15	6.0	0.06	13.92	0.01	1.869	33.65	0.60	16.8	81.7	1.5	-5.05	0.74	0.69	—	4.2	0.003	0.83	0.0	0.05	15.32	0.01	2.140	17.57	0.02	11.2	87.8	1.0	-2.37	2.51	0.82	0.81	—	47836	5695	27	112	69	0	0	logfile
✘	6ADQ	9610	2022-12-22	2018-08-01	3.5	3.66	3.51	3.6	0.018	1.74	0.0	0.07	16.83	0.03	1.170	9.77	0.51	9.8	90.1	0.1	-4.62	0.67	0.81	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48946	6026	44	0	74	0	0	logfile
✔	6CNF	7533	2022-12-22	2018-03-08	4.5	4.70	—	4.4	0.006	1.16	9.0	0.06	13.86	0.01	1.905	40.33	0.74	17.9	80.5	1.6	-5.23	0.74	0.65	—	4.4	0.004	0.88	0.0	0.05	15.16	0.01	2.024	23.60	0.00	12.3	86.8	0.9	-2.74	1.48	0.85	0.80	—	47675	5695	27	104	69	0	0	logfile
✔	5N61	3593	2022-12-22	2017-02-14	3.4	3.59	—	3.5	0.012	1.19	0.0	0.05	14.76	0.01	0.343	36.53	7.23	9.1	88.8	2.1	-4.08	0.72	0.65	2.60	3.5	0.003	0.75	0.0	0.05	16.28	0.01	1.983	15.32	0.34	5.6	94.1	0.2	-0.45	2.75	0.81	0.84	1.97	48547	5887	27	79	9	0	0	logfile
✔	6TE8	10476	2022-12-22	2019-11-11	3.32	3.40	—	3.3	0.004	0.72	0.0	0.05	13.24	0.00	2.170	15.63	0.98	8.7	90.9	0.4	-5.43	0.82	0.87	2.69	3.3	0.003	0.69	0.0	0.04	15.27	0.00	2.138	13.22	0.72	6.6	93.4	0.0	-1.02	1.61	0.80	0.88	1.95	49164	6504	24	0	0	0	0	logfile
✔	6TFJ	10492	2022-12-22	2019-11-14	2.9	3.01	2.90	3.0	0.002	0.43	0.0	0.04	9.89	0.00	2.013	6.81	0.11	8.4	91.6	0.0	-2.53	0.70	0.73	2.51	3.0	0.003	0.55	0.0	0.04	15.02	0.00	1.958	8.87	1.38	7.0	93.0	0.1	-0.74	1.32	0.70	0.76	2.18	48340	3058	4	0	0	0	24098	logfile

• Page 1 of 443
• next →