Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PY5	13713	2023-04-29	2021-10-09	3.9	4.34	—	4.2	0.002	0.62	0.0	0.04	14.71	0.00	2.071	8.67	0.00	5.4	94.6	0.0	-1.41	0.80	0.79	1.13	4.2	0.003	0.63	0.0	0.04	16.58	0.00	1.942	11.47	0.21	5.5	94.5	0.0	-0.54	0.47	0.78	0.79	1.14	29959	3832	11	67	3	0	0	logfile
✔	7PYK	13718	2023-04-29	2021-10-10	4.1	5.03	—	4.4	0.004	0.77	0.0	0.05	15.31	0.01	1.512	12.77	0.04	6.7	93.3	0.0	-1.75	0.89	0.85	—	4.4	0.005	0.71	0.0	0.04	15.37	0.00	1.948	20.73	0.00	7.8	92.2	0.0	-1.12	0.41	0.89	0.86	—	29342	3787	10	67	3	0	0	logfile
✔	7PY6	13714	2023-04-29	2021-10-09	4.1	4.66	—	4.4	0.003	0.65	0.0	0.04	15.45	0.00	2.105	10.25	0.04	4.5	95.5	0.0	-1.20	0.86	0.83	—	4.4	0.005	0.68	0.0	0.04	15.65	0.00	1.959	15.39	0.04	6.1	93.9	0.0	-0.86	0.43	0.86	0.85	—	29959	3832	11	67	3	0	0	logfile
✘	6VVY	21407	2023-04-29	2020-02-18	3.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30033	3516	12	130	4	0	0	logfile
✔	7PY3	13709	2023-04-29	2021-10-08	3.8	4.31	—	4.2	0.003	0.67	0.0	0.05	15.57	0.00	2.060	8.35	0.04	6.4	93.6	0.0	-1.94	0.78	0.78	1.22	4.2	0.004	0.65	0.0	0.04	17.16	0.00	1.992	13.09	0.15	8.0	91.9	0.1	-1.19	0.39	0.78	0.79	1.05	29362	3787	10	68	3	0	0	logfile
✔	7PY7	13715	2023-04-29	2021-10-09	4.1	4.76	—	4.5	0.003	0.65	0.0	0.04	15.13	0.00	2.097	10.86	0.04	5.7	94.2	0.1	-1.49	0.86	0.83	—	4.5	0.005	0.70	0.0	0.04	15.59	0.00	2.037	16.90	0.07	7.6	92.3	0.1	-1.21	0.42	0.87	0.85	—	30000	3832	11	69	3	0	0	logfile
✔	7M0R	23613	2023-04-29	2021-03-11	3.7	4.13	—	3.3	0.004	0.71	0.0	0.05	12.84	0.00	2.056	16.98	1.04	4.4	95.6	0.0	-2.49	0.84	0.82	1.82	3.3	0.003	0.63	0.0	0.05	14.27	0.00	2.156	15.16	0.24	3.9	96.1	0.0	-1.21	1.20	0.84	0.83	1.61	30898	4228	8	0	134	0	0	logfile
✔	7PYJ	13717	2023-04-29	2021-10-10	4.2	5.28	—	4.4	0.003	0.68	0.0	0.05	14.77	0.00	2.087	11.88	0.04	6.7	93.3	0.1	-1.32	0.90	0.85	—	4.4	0.002	0.61	0.0	0.04	15.11	0.00	2.011	15.17	0.00	6.5	93.5	0.0	-0.50	0.39	0.90	0.85	—	29362	3787	10	68	3	0	0	logfile
✔	6FLQ	4275	2023-04-29	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.003	0.76	0.0	0.04	16.91	0.00	1.971	14.51	0.26	8.9	91.0	0.1	-1.55	2.04	0.27	0.21	0.19	30201	3868	10	91	3	0	0	logfile
✘	6VVX	21406	2023-04-29	2020-02-18	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29858	3508	12	128	4	0	0	logfile
✔	6Q2R	20578	2023-04-29	2019-08-08	4.3	4.92	—	4.6	0.004	0.82	0.0	0.05	8.43	0.01	1.384	4.86	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	4.6	0.004	0.74	0.0	0.04	11.38	0.01	2.060	19.20	0.03	7.2	92.8	0.0	-1.75	2.63	0.75	0.73	—	30392	3800	16	0	40	0	0	logfile
✔	5iT9	8124	2023-04-29	2016-03-16	3.8	3.86	3.80	3.9	0.007	1.31	42.0	0.10	21.51	0.01	0.713	10.39	9.44	11.2	84.3	4.6	-3.05	0.60	0.76	0.99	3.8	0.005	0.84	0.0	0.04	19.92	0.01	1.810	19.12	1.00	11.9	86.6	1.5	-2.03	1.72	0.62	0.79	1.00	80144	4848	43	1972	83	0	0	logfile
✔	7BAM	12124	2023-04-29	2020-12-16	3.5	3.66	—	3.5	0.007	0.79	0.0	0.06	13.36	0.01	1.869	24.85	0.24	5.8	94.2	0.0	-1.70	0.82	0.83	3.32	3.6	0.003	0.70	0.0	0.05	15.27	0.00	2.089	8.39	0.30	5.4	94.6	0.0	-0.54	0.51	0.82	0.83	2.85	30612	3808	12	0	36	0	0	logfile
✔	6ACJ	9593	2023-04-29	2018-07-26	4.2	4.37	—	4.2	0.010	1.33	2.0	0.07	11.28	0.01	1.731	12.04	0.61	16.8	82.7	0.6	-4.76	0.74	0.71	—	4.2	0.003	0.76	0.0	0.05	12.46	0.00	2.108	18.18	0.00	12.3	87.5	0.2	-2.61	2.04	0.74	0.71	—	29715	3784	4	0	0	0	0	logfile
✔	7MBP	23740	2023-04-29	2021-04-01	2.8	3.41	—	3.1	0.003	0.56	0.0	0.04	12.29	0.00	2.028	7.59	0.30	2.7	97.2	0.1	1.88	0.72	0.83	3.33	3.1	0.005	0.58	0.0	0.04	13.55	0.00	2.264	6.91	0.91	3.1	96.9	0.0	2.21	1.11	0.72	0.86	2.79	30708	3984	8	0	12	0	0	logfile
✔	6KiV	9999	2023-04-29	2019-07-20	4.0	4.16	—	4.0	0.007	0.90	0.0	0.05	22.52	0.01	2.263	5.24	0.00	9.6	90.4	0.0	-3.80	0.75	0.75	—	4.0	0.003	0.71	0.0	0.04	24.34	0.00	2.155	13.06	0.19	6.9	93.1	0.0	-1.82	0.85	0.77	0.79	—	20719	1865	16	290	1	0	0	logfile
✔	6GC4	4380	2023-04-29	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.89	0.0	0.04	16.38	0.01	1.958	31.29	0.04	13.2	86.6	0.2	-3.03	1.05	0.81	0.80	—	80165	2836	26	2705	0	0	0	logfile
✔	6ACK	9594	2023-04-29	2018-07-26	4.5	4.60	—	4.3	0.010	1.35	3.0	0.07	11.39	0.01	1.533	15.24	0.79	16.1	83.5	0.5	-4.81	0.80	0.72	—	4.3	0.004	0.80	0.0	0.05	12.31	0.00	2.057	24.53	0.00	13.4	86.3	0.3	-3.00	1.55	0.80	0.72	—	29715	3784	4	0	0	0	0	logfile
✔	6QS7	4626	2023-04-29	2019-02-20	3.8	3.89	3.67	3.8	0.011	1.05	0.0	0.06	10.39	0.01	2.041	7.09	0.20	7.7	92.3	0.0	-3.83	0.71	0.81	2.36	3.8	0.004	0.71	0.0	0.04	15.60	0.00	1.924	13.46	0.47	6.0	94.0	0.0	-0.09	1.42	0.76	0.83	1.81	28875	3603	13	0	43	0	0	logfile
✔	6QS8	4627	2023-04-29	2019-02-20	3.9	4.01	3.80	3.9	0.011	1.05	0.0	0.06	10.42	0.01	2.018	5.95	0.17	6.7	93.3	0.0	-3.91	0.75	0.76	2.00	3.9	0.003	0.72	0.0	0.04	15.35	0.00	1.893	13.86	0.37	5.3	94.7	0.0	0.28	1.01	0.78	0.82	1.60	28875	3603	13	0	43	0	0	logfile

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