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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8iNK | 35599 | 2024-03-28 | 2023-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152807 | 8896 | 54 | 3766 | 2 | 0 | 0 | logfile |
✘ | 8iDY | 35371 | 2024-03-28 | 2023-02-14 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155910 | 8949 | 56 | 3918 | 2 | 0 | 0 | logfile |
✘ | 7PiN | 13444 | 2024-03-28 | 2021-08-22 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152240 | 14846 | 170 | 0 | 721 | 0 | 0 | logfile |
✘ | 5MMM | 3533 | 2024-03-28 | 2016-12-11 | 3.4 | 3.54 | — | 3.4 | 0.008 | 1.13 | 0.0 | 0.05 | 23.72 | 0.01 | 1.757 | 9.01 | 9.93 | 4.9 | 94.8 | 0.3 | -3.33 | 0.90 | 0.86 | 1.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152465 | 6586 | 86 | 4585 | 955 | 0 | 0 | logfile |
✔ | 7PJW | 13462 | 2024-03-28 | 2021-08-24 | 4.0 | 4.18 | 3.62 | 4.0 | 0.007 | 0.94 | 3.0 | 0.05 | 24.06 | 0.02 | 1.344 | 23.05 | 0.46 | 13.5 | 86.3 | 0.2 | -4.51 | 0.71 | 0.76 | — | 4.0 | 0.005 | 0.76 | 1.0 | 0.04 | 23.76 | 0.01 | 1.917 | 20.32 | 4.78 | 9.9 | 90.1 | 0.0 | -2.04 | 1.78 | 0.73 | 0.79 | — | 152719 | 6657 | 61 | 4728 | 2 | 0 | 0 | logfile |
✘ | 7RMC | 24560 | 2024-03-28 | 2021-07-27 | 3.5 | 3.50 | — | 3.6 | 0.013 | 2.05 | 44.0 | 0.15 | 17.28 | 0.02 | 2.304 | 1.80 | 1.65 | 4.6 | 95.1 | 0.4 | -1.78 | 0.26 | 0.38 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106824 | 6732 | 24 | 0 | 24 | 0 | 53244 | logfile |
✔ | 7MSZ | 23972 | 2024-03-28 | 2021-05-12 | 3.1 | 2.44 | — | 2.9 | 0.013 | 1.14 | 1.0 | 0.06 | 22.78 | 0.01 | 1.949 | 3.55 | 0.54 | 9.3 | 90.6 | 0.1 | -4.96 | 0.83 | 0.84 | 3.69 | 2.9 | 0.008 | 0.78 | 0.0 | 0.04 | 22.66 | 0.01 | 1.764 | 8.48 | 4.69 | 8.4 | 91.5 | 0.1 | -2.28 | 0.46 | 0.83 | 0.85 | 2.69 | 152345 | 6171 | 72 | 4836 | 427 | 0 | 0 | logfile |
✔ | 6FTJ | 4317 | 2024-03-28 | 2018-02-22 | 4.7 | 4.88 | — | 4.7 | 0.011 | 1.39 | 18.0 | 0.10 | 25.54 | 0.01 | 0.475 | 12.11 | 11.77 | 9.8 | 87.8 | 2.4 | -4.05 | 0.63 | 0.62 | — | 4.7 | 0.007 | 1.00 | 0.0 | 0.05 | 24.64 | 0.01 | 0.951 | 43.92 | 0.04 | 11.6 | 87.9 | 0.5 | -2.52 | 1.18 | 0.67 | 0.71 | — | 152111 | 8263 | 74 | 3938 | 461 | 0 | 0 | logfile |
✘ | 5KPW | 8281 | 2024-03-28 | 2016-07-05 | 3.9 | 5.27 | 4.08 | 3.8 | 0.007 | 1.11 | 5.0 | 0.09 | 22.51 | 0.01 | 2.191 | 24.08 | 0.79 | 12.9 | 81.4 | 5.7 | -4.53 | 0.90 | 0.77 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 7CKC | 30385 | 2024-03-27 | 2020-07-16 | 2.9 | 2.95 | — | 2.9 | 0.007 | 0.92 | 0.0 | 0.05 | 16.47 | 0.01 | 2.090 | 5.46 | 0.00 | 2.2 | 97.8 | 0.0 | -0.01 | 0.81 | 0.87 | 3.65 | 2.9 | 0.006 | 0.75 | 0.0 | 0.05 | 17.84 | 0.00 | 2.077 | 5.64 | 4.35 | 2.1 | 97.9 | 0.0 | 0.35 | 1.54 | 0.81 | 0.88 | 3.59 | 150300 | 20820 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 5o61 | 3751 | 2024-03-27 | 2017-06-03 | 3.31 | 3.39 | — | 3.3 | 0.007 | 0.99 | 0.0 | 0.04 | 24.46 | 0.01 | 1.579 | 7.50 | 10.91 | 4.7 | 95.1 | 0.2 | -3.02 | 0.83 | 0.88 | 2.03 | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 23.97 | 0.00 | 1.052 | 11.55 | 7.11 | 4.7 | 95.3 | 0.0 | -0.14 | 0.65 | 0.83 | 0.87 | 1.63 | 151463 | 6088 | 73 | 4830 | 631 | 0 | 0 | logfile |
✔ | 6DZi | 8932 | 2024-03-27 | 2018-07-05 | 3.46 | 3.52 | — | 3.5 | 0.011 | 1.05 | 21.0 | 0.07 | 23.51 | 0.01 | 1.028 | 7.00 | 0.62 | 9.8 | 89.5 | 0.8 | -4.46 | 0.78 | 0.79 | 2.41 | 3.5 | 0.003 | 0.62 | 0.0 | 0.03 | 23.45 | 0.00 | 2.010 | 10.85 | 3.27 | 6.7 | 93.3 | 0.0 | -1.34 | 1.22 | 0.82 | 0.84 | 1.68 | 150868 | 6283 | 56 | 4748 | 0 | 0 | 0 | logfile |
✔ | 5A9Z | 6396 | 2024-03-27 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 28.05 | 0.03 | 0.000 | 199.42 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | 4.7 | 0.006 | 0.94 | 0.0 | 0.04 | 25.37 | 0.01 | 0.000 | 36.51 | 0.22 | 20.5 | 77.2 | 2.3 | -4.19 | 2.91 | 0.87 | 0.81 | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✔ | 8AGW | 15426 | 2024-03-27 | 2022-07-20 | 2.6 | 3.24 | 2.70 | 2.7 | 0.006 | 0.90 | 7.0 | 0.06 | 21.72 | 0.01 | 1.371 | 4.13 | 0.98 | 3.8 | 96.1 | 0.1 | -0.36 | 0.92 | 0.89 | 3.19 | 2.6 | 0.005 | 0.61 | 0.0 | 0.04 | 21.64 | 0.00 | 1.893 | 8.41 | 2.31 | 4.5 | 95.5 | 0.0 | 0.63 | 0.46 | 0.94 | 0.92 | 3.22 | 150269 | 9285 | 68 | 3642 | 38 | 0 | 0 | logfile |
✔ | 8AGV | 15425 | 2024-03-27 | 2022-07-20 | 2.6 | 3.24 | 2.71 | 2.7 | 0.006 | 0.91 | 8.0 | 0.06 | 21.64 | 0.01 | 1.419 | 4.95 | 1.56 | 3.7 | 96.2 | 0.1 | 0.07 | 0.92 | 0.89 | 2.99 | 2.7 | 0.005 | 0.64 | 0.0 | 0.04 | 21.66 | 0.00 | 1.874 | 9.29 | 2.45 | 4.2 | 95.8 | 0.0 | 0.54 | 1.19 | 0.94 | 0.92 | 3.18 | 151349 | 9427 | 69 | 3642 | 38 | 0 | 0 | logfile |
✔ | 5ZLU | 6934 | 2024-03-27 | 2018-03-29 | 3.6 | 3.66 | — | 3.6 | 0.008 | 1.26 | 2.0 | 0.07 | 24.87 | 0.01 | 0.401 | 13.10 | 2.52 | 18.9 | 79.1 | 1.9 | -5.90 | 0.78 | 0.77 | 1.74 | 3.6 | 0.004 | 0.84 | 1.0 | 0.04 | 24.65 | 0.01 | 2.059 | 12.70 | 6.90 | 19.8 | 79.4 | 0.7 | -4.50 | 0.55 | 0.78 | 0.78 | 0.91 | 150313 | 6529 | 60 | 4596 | 4 | 0 | 0 | logfile |
✔ | 8AGT | 15423 | 2024-03-27 | 2022-07-20 | 2.6 | 3.22 | 2.67 | 2.6 | 0.006 | 0.90 | 6.0 | 0.05 | 21.62 | 0.01 | 1.011 | 4.89 | 1.63 | 3.6 | 96.3 | 0.1 | 0.14 | 0.92 | 0.88 | 3.20 | 2.6 | 0.003 | 0.60 | 1.0 | 0.04 | 21.63 | 0.00 | 1.973 | 9.10 | 1.76 | 4.1 | 95.8 | 0.0 | 0.64 | 1.16 | 0.93 | 0.91 | 3.03 | 151341 | 9428 | 69 | 3642 | 37 | 0 | 0 | logfile |
✔ | 7LVK | 23539 | 2024-03-27 | 2021-02-25 | 2.2 | 2.31 | — | 2.4 | 0.009 | 0.92 | 8.0 | 0.06 | 23.30 | 0.02 | 1.324 | 2.41 | 0.81 | 5.1 | 94.8 | 0.2 | -2.34 | 0.64 | 0.86 | 5.37 | 2.4 | 0.004 | 0.66 | 0.0 | 0.04 | 23.38 | 0.01 | 1.004 | 5.80 | 2.34 | 4.8 | 95.1 | 0.1 | -0.29 | 0.96 | 0.67 | 0.88 | 5.08 | 151436 | 3222 | 63 | 3016 | 181 | 2716 | 58704 | logfile |
✘ | 8AGZ | 15428 | 2024-03-27 | 2022-07-20 | 2.6 | 3.24 | 2.62 | 2.6 | 0.006 | 0.91 | 7.0 | 0.05 | 21.69 | 0.01 | 1.172 | 5.43 | 1.49 | 3.7 | 96.2 | 0.1 | -0.39 | 0.92 | 0.89 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 151339 | 9427 | 69 | 3640 | 41 | 0 | 0 | logfile |
✔ | 6UZC | 20956 | 2024-03-27 | 2019-11-14 | 4.5 | 5.36 | — | 5.2 | 0.018 | 1.84 | 8.0 | 0.10 | 10.97 | 0.01 | 1.850 | 6.87 | 0.26 | 5.0 | 94.4 | 0.6 | -0.66 | 0.48 | 0.67 | — | 5.2 | 0.003 | 0.80 | 0.0 | 0.05 | 13.33 | 0.00 | 2.066 | 21.54 | 0.03 | 8.5 | 91.4 | 0.1 | -1.22 | 1.80 | 0.51 | 0.72 | — | 150312 | 19473 | 42 | 0 | 0 | 0 | 0 | logfile |