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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PY5 | 13713 | 2023-04-29 | 2021-10-09 | 3.9 | 4.34 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 14.71 | 0.00 | 2.071 | 8.67 | 0.00 | 5.4 | 94.6 | 0.0 | -1.41 | 0.80 | 0.79 | 1.13 | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 16.58 | 0.00 | 1.942 | 11.47 | 0.21 | 5.5 | 94.5 | 0.0 | -0.54 | 0.47 | 0.78 | 0.79 | 1.14 | 29959 | 3832 | 11 | 67 | 3 | 0 | 0 | logfile |
✔ | 7PYK | 13718 | 2023-04-29 | 2021-10-10 | 4.1 | 5.03 | — | 4.4 | 0.004 | 0.77 | 0.0 | 0.05 | 15.31 | 0.01 | 1.512 | 12.77 | 0.04 | 6.7 | 93.3 | 0.0 | -1.75 | 0.89 | 0.85 | — | 4.4 | 0.005 | 0.71 | 0.0 | 0.04 | 15.37 | 0.00 | 1.948 | 20.73 | 0.00 | 7.8 | 92.2 | 0.0 | -1.12 | 0.41 | 0.89 | 0.86 | — | 29342 | 3787 | 10 | 67 | 3 | 0 | 0 | logfile |
✔ | 7PY6 | 13714 | 2023-04-29 | 2021-10-09 | 4.1 | 4.66 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.45 | 0.00 | 2.105 | 10.25 | 0.04 | 4.5 | 95.5 | 0.0 | -1.20 | 0.86 | 0.83 | — | 4.4 | 0.005 | 0.68 | 0.0 | 0.04 | 15.65 | 0.00 | 1.959 | 15.39 | 0.04 | 6.1 | 93.9 | 0.0 | -0.86 | 0.43 | 0.86 | 0.85 | — | 29959 | 3832 | 11 | 67 | 3 | 0 | 0 | logfile |
✘ | 6VVY | 21407 | 2023-04-29 | 2020-02-18 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30033 | 3516 | 12 | 130 | 4 | 0 | 0 | logfile |
✔ | 7PY3 | 13709 | 2023-04-29 | 2021-10-08 | 3.8 | 4.31 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.05 | 15.57 | 0.00 | 2.060 | 8.35 | 0.04 | 6.4 | 93.6 | 0.0 | -1.94 | 0.78 | 0.78 | 1.22 | 4.2 | 0.004 | 0.65 | 0.0 | 0.04 | 17.16 | 0.00 | 1.992 | 13.09 | 0.15 | 8.0 | 91.9 | 0.1 | -1.19 | 0.39 | 0.78 | 0.79 | 1.05 | 29362 | 3787 | 10 | 68 | 3 | 0 | 0 | logfile |
✔ | 7PY7 | 13715 | 2023-04-29 | 2021-10-09 | 4.1 | 4.76 | — | 4.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.13 | 0.00 | 2.097 | 10.86 | 0.04 | 5.7 | 94.2 | 0.1 | -1.49 | 0.86 | 0.83 | — | 4.5 | 0.005 | 0.70 | 0.0 | 0.04 | 15.59 | 0.00 | 2.037 | 16.90 | 0.07 | 7.6 | 92.3 | 0.1 | -1.21 | 0.42 | 0.87 | 0.85 | — | 30000 | 3832 | 11 | 69 | 3 | 0 | 0 | logfile |
✔ | 7M0R | 23613 | 2023-04-29 | 2021-03-11 | 3.7 | 4.13 | — | 3.3 | 0.004 | 0.71 | 0.0 | 0.05 | 12.84 | 0.00 | 2.056 | 16.98 | 1.04 | 4.4 | 95.6 | 0.0 | -2.49 | 0.84 | 0.82 | 1.82 | 3.3 | 0.003 | 0.63 | 0.0 | 0.05 | 14.27 | 0.00 | 2.156 | 15.16 | 0.24 | 3.9 | 96.1 | 0.0 | -1.21 | 1.20 | 0.84 | 0.83 | 1.61 | 30898 | 4228 | 8 | 0 | 134 | 0 | 0 | logfile |
✔ | 7PYJ | 13717 | 2023-04-29 | 2021-10-10 | 4.2 | 5.28 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.05 | 14.77 | 0.00 | 2.087 | 11.88 | 0.04 | 6.7 | 93.3 | 0.1 | -1.32 | 0.90 | 0.85 | — | 4.4 | 0.002 | 0.61 | 0.0 | 0.04 | 15.11 | 0.00 | 2.011 | 15.17 | 0.00 | 6.5 | 93.5 | 0.0 | -0.50 | 0.39 | 0.90 | 0.85 | — | 29362 | 3787 | 10 | 68 | 3 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2023-04-29 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 16.91 | 0.00 | 1.971 | 14.51 | 0.26 | 8.9 | 91.0 | 0.1 | -1.55 | 2.04 | 0.27 | 0.21 | 0.19 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✘ | 6VVX | 21406 | 2023-04-29 | 2020-02-18 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29858 | 3508 | 12 | 128 | 4 | 0 | 0 | logfile |
✔ | 6Q2R | 20578 | 2023-04-29 | 2019-08-08 | 4.3 | 4.92 | — | 4.6 | 0.004 | 0.82 | 0.0 | 0.05 | 8.43 | 0.01 | 1.384 | 4.86 | 0.00 | 5.4 | 94.6 | 0.0 | -3.85 | 0.68 | 0.53 | — | 4.6 | 0.004 | 0.74 | 0.0 | 0.04 | 11.38 | 0.01 | 2.060 | 19.20 | 0.03 | 7.2 | 92.8 | 0.0 | -1.75 | 2.63 | 0.75 | 0.73 | — | 30392 | 3800 | 16 | 0 | 40 | 0 | 0 | logfile |
✔ | 5iT9 | 8124 | 2023-04-29 | 2016-03-16 | 3.8 | 3.86 | 3.80 | 3.9 | 0.007 | 1.31 | 42.0 | 0.10 | 21.51 | 0.01 | 0.713 | 10.39 | 9.44 | 11.2 | 84.3 | 4.6 | -3.05 | 0.60 | 0.76 | 0.99 | 3.8 | 0.005 | 0.84 | 0.0 | 0.04 | 19.92 | 0.01 | 1.810 | 19.12 | 1.00 | 11.9 | 86.6 | 1.5 | -2.03 | 1.72 | 0.62 | 0.79 | 1.00 | 80144 | 4848 | 43 | 1972 | 83 | 0 | 0 | logfile |
✔ | 7BAM | 12124 | 2023-04-29 | 2020-12-16 | 3.5 | 3.66 | — | 3.5 | 0.007 | 0.79 | 0.0 | 0.06 | 13.36 | 0.01 | 1.869 | 24.85 | 0.24 | 5.8 | 94.2 | 0.0 | -1.70 | 0.82 | 0.83 | 3.32 | 3.6 | 0.003 | 0.70 | 0.0 | 0.05 | 15.27 | 0.00 | 2.089 | 8.39 | 0.30 | 5.4 | 94.6 | 0.0 | -0.54 | 0.51 | 0.82 | 0.83 | 2.85 | 30612 | 3808 | 12 | 0 | 36 | 0 | 0 | logfile |
✔ | 6ACJ | 9593 | 2023-04-29 | 2018-07-26 | 4.2 | 4.37 | — | 4.2 | 0.010 | 1.33 | 2.0 | 0.07 | 11.28 | 0.01 | 1.731 | 12.04 | 0.61 | 16.8 | 82.7 | 0.6 | -4.76 | 0.74 | 0.71 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.05 | 12.46 | 0.00 | 2.108 | 18.18 | 0.00 | 12.3 | 87.5 | 0.2 | -2.61 | 2.04 | 0.74 | 0.71 | — | 29715 | 3784 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MBP | 23740 | 2023-04-29 | 2021-04-01 | 2.8 | 3.41 | — | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.29 | 0.00 | 2.028 | 7.59 | 0.30 | 2.7 | 97.2 | 0.1 | 1.88 | 0.72 | 0.83 | 3.33 | 3.1 | 0.005 | 0.58 | 0.0 | 0.04 | 13.55 | 0.00 | 2.264 | 6.91 | 0.91 | 3.1 | 96.9 | 0.0 | 2.21 | 1.11 | 0.72 | 0.86 | 2.79 | 30708 | 3984 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6KiV | 9999 | 2023-04-29 | 2019-07-20 | 4.0 | 4.16 | — | 4.0 | 0.007 | 0.90 | 0.0 | 0.05 | 22.52 | 0.01 | 2.263 | 5.24 | 0.00 | 9.6 | 90.4 | 0.0 | -3.80 | 0.75 | 0.75 | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.04 | 24.34 | 0.00 | 2.155 | 13.06 | 0.19 | 6.9 | 93.1 | 0.0 | -1.82 | 0.85 | 0.77 | 0.79 | — | 20719 | 1865 | 16 | 290 | 1 | 0 | 0 | logfile |
✔ | 6GC4 | 4380 | 2023-04-29 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.11 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.008 | 0.89 | 0.0 | 0.04 | 16.38 | 0.01 | 1.958 | 31.29 | 0.04 | 13.2 | 86.6 | 0.2 | -3.03 | 1.05 | 0.81 | 0.80 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 6ACK | 9594 | 2023-04-29 | 2018-07-26 | 4.5 | 4.60 | — | 4.3 | 0.010 | 1.35 | 3.0 | 0.07 | 11.39 | 0.01 | 1.533 | 15.24 | 0.79 | 16.1 | 83.5 | 0.5 | -4.81 | 0.80 | 0.72 | — | 4.3 | 0.004 | 0.80 | 0.0 | 0.05 | 12.31 | 0.00 | 2.057 | 24.53 | 0.00 | 13.4 | 86.3 | 0.3 | -3.00 | 1.55 | 0.80 | 0.72 | — | 29715 | 3784 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QS7 | 4626 | 2023-04-29 | 2019-02-20 | 3.8 | 3.89 | 3.67 | 3.8 | 0.011 | 1.05 | 0.0 | 0.06 | 10.39 | 0.01 | 2.041 | 7.09 | 0.20 | 7.7 | 92.3 | 0.0 | -3.83 | 0.71 | 0.81 | 2.36 | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 15.60 | 0.00 | 1.924 | 13.46 | 0.47 | 6.0 | 94.0 | 0.0 | -0.09 | 1.42 | 0.76 | 0.83 | 1.81 | 28875 | 3603 | 13 | 0 | 43 | 0 | 0 | logfile |
✔ | 6QS8 | 4627 | 2023-04-29 | 2019-02-20 | 3.9 | 4.01 | 3.80 | 3.9 | 0.011 | 1.05 | 0.0 | 0.06 | 10.42 | 0.01 | 2.018 | 5.95 | 0.17 | 6.7 | 93.3 | 0.0 | -3.91 | 0.75 | 0.76 | 2.00 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 15.35 | 0.00 | 1.893 | 13.86 | 0.37 | 5.3 | 94.7 | 0.0 | 0.28 | 1.01 | 0.78 | 0.82 | 1.60 | 28875 | 3603 | 13 | 0 | 43 | 0 | 0 | logfile |