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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PHG | 13415 | 2024-03-11 | 2021-08-17 | 4.3 | 4.13 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 13.71 | 0.00 | 1.916 | 18.40 | 0.00 | 11.9 | 88.1 | 0.0 | -3.68 | 0.78 | 0.67 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.40 | 0.00 | 1.919 | 21.02 | 0.00 | 13.1 | 86.9 | 0.0 | -3.80 | 1.25 | 0.78 | 0.67 | — | 6469 | 427 | 3 | 0 | 0 | 0 | 3160 | logfile |
✘ | 8APJ | 15572 | 2024-03-16 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✔ | 7JJJ | 22354 | 2024-03-11 | 2020-07-26 | 4.5 | 4.63 | 4.47 | 4.5 | 0.020 | 1.79 | 0.0 | 0.13 | 10.01 | 0.01 | 2.377 | 0.90 | 0.07 | 2.0 | 98.0 | 0.0 | 0.68 | 0.79 | 0.80 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.05 | 11.60 | 0.00 | 2.175 | 10.75 | 0.00 | 4.4 | 95.6 | 0.0 | -0.16 | 1.43 | 0.79 | 0.83 | — | 54614 | 6674 | 92 | 0 | 182 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2024-03-10 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UNF | 26623 | 2024-03-14 | 2022-04-10 | 4.08 | 3.35 | — | 3.5 | 0.007 | 0.98 | 0.0 | 0.05 | 15.89 | 0.01 | 2.011 | 4.35 | 0.27 | 4.8 | 95.2 | 0.0 | -5.90 | 0.66 | 0.82 | — | 3.5 | 0.005 | 0.70 | 0.0 | 0.05 | 15.01 | 0.00 | 2.120 | 7.46 | 0.03 | 5.4 | 94.6 | 0.0 | -1.31 | 1.03 | 0.66 | 0.83 | — | 66971 | 8805 | 40 | 0 | 26 | 0 | 0 | logfile |
✔ | 6CB1 | 7445 | 2024-03-15 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 23.82 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.004 | 0.79 | 0.0 | 0.04 | 23.93 | 0.00 | 2.036 | 21.64 | 0.00 | 9.1 | 90.8 | 0.1 | -1.28 | 2.04 | 0.75 | 0.75 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✘ | 7oUi | 13078 | 2024-03-18 | 2021-06-11 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84427 | 8342 | 108 | 0 | 374 | 139 | 0 | logfile |
✘ | 8APD | 15566 | 2024-03-16 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✔ | 7TDT | 25838 | 2024-03-16 | 2022-01-03 | 4.0 | 4.13 | — | 4.0 | 0.002 | 0.57 | 0.0 | 0.04 | 13.40 | 0.00 | 1.908 | 10.09 | 0.00 | 8.2 | 91.7 | 0.1 | -0.53 | 0.63 | 0.69 | — | 4.0 | 0.003 | 0.79 | 0.0 | 0.04 | 15.88 | 0.00 | 2.135 | 15.05 | 2.31 | 9.0 | 91.0 | 0.0 | -0.94 | 1.33 | 0.64 | 0.72 | — | 14444 | 1818 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RFS | 4874 | 2024-03-12 | 2019-04-16 | 4.04 | 4.52 | — | 4.1 | 0.010 | 1.26 | 0.0 | 0.94 | 10.33 | 0.01 | 2.078 | 8.88 | 0.15 | 8.3 | 91.5 | 0.2 | -4.08 | 0.83 | 0.83 | — | 4.1 | 0.008 | 1.57 | 0.0 | 0.29 | 11.90 | 0.00 | 2.039 | 17.07 | 0.02 | 5.8 | 94.1 | 0.0 | -0.56 | 1.37 | 0.83 | 0.84 | — | 60966 | 7685 | 49 | 0 | 12 | 0 | 0 | logfile |
✘ | 8ENM | 28273 | 2024-03-17 | 2022-09-30 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17722 | 1999 | 12 | 0 | 8 | 1693 | 0 | logfile |
✔ | 7N1Y | 24127 | 2024-03-20 | 2021-05-28 | 4.3 | 2.48 | — | 2.0 | 0.016 | 2.11 | 23.0 | 0.15 | 16.16 | 0.01 | 1.099 | 10.84 | 1.91 | 8.5 | 90.8 | 0.6 | -2.82 | 0.78 | 0.64 | — | 2.0 | 0.004 | 0.79 | 0.0 | 0.05 | 13.82 | 0.00 | 2.072 | 15.44 | 0.00 | 6.8 | 93.2 | 0.0 | -1.43 | 0.69 | 0.78 | 0.64 | — | 26636 | 3242 | 31 | 0 | 91 | 0 | 0 | logfile |
✔ | 7Q59 | 13829 | 2024-03-25 | 2021-11-03 | 4.36 | 4.89 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.04 | 10.22 | 0.00 | 1.925 | 6.09 | 0.72 | 3.6 | 96.4 | 0.0 | -0.17 | 0.79 | 0.65 | — | 4.4 | 0.004 | 0.69 | 0.0 | 0.04 | 11.74 | 0.00 | 1.967 | 16.26 | 0.00 | 4.5 | 95.5 | 0.0 | -0.14 | 1.43 | 0.90 | 0.84 | — | 47632 | 6118 | 14 | 0 | 6 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2024-03-21 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.80 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2024-03-10 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 23.50 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.006 | 0.88 | 0.0 | 0.04 | 28.37 | 0.01 | 1.818 | 83.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.72 | 0.95 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 8B0i | 15784 | 2024-03-17 | 2022-09-07 | 4.28 | 5.23 | 4.35 | 4.5 | 0.012 | 1.98 | 1.0 | 0.11 | 24.77 | 0.01 | 1.911 | 8.92 | 0.14 | 5.1 | 94.9 | 0.0 | -1.62 | 0.77 | 0.61 | — | 4.5 | 0.002 | 0.60 | 0.0 | 0.04 | 22.78 | 0.00 | 1.983 | 13.77 | 0.00 | 5.0 | 95.0 | 0.0 | 0.27 | 1.44 | 0.80 | 0.73 | — | 17636 | 1075 | 5 | 103 | 0 | 0 | 7831 | logfile |
✘ | 8AP7 | 15560 | 2024-03-17 | 2022-08-09 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71474 | 4076 | 58 | 0 | 44 | 24 | 33618 | logfile |
✘ | 8APA | 15563 | 2024-03-16 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 7PiW | 13455 | 2024-03-27 | 2021-08-23 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 151508 | 14859 | 161 | 0 | 703 | 0 | 0 | logfile |
✘ | 8APH | 15571 | 2024-03-16 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |