Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KiV	9999	2022-12-16	2019-07-20	4.0	4.16	—	4.0	0.007	0.90	0.0	0.05	22.52	0.01	2.263	5.31	0.00	9.6	90.4	0.0	-3.80	0.75	0.75	—	4.0	0.003	0.70	0.0	0.04	24.39	0.00	2.152	13.11	0.44	6.9	93.1	0.0	-1.78	0.86	0.77	0.78	—	20719	1865	16	290	1	0	0	logfile
✔	6KiU	9998	2022-12-16	2019-07-20	3.2	3.29	—	3.2	0.007	0.86	0.0	0.05	21.95	0.01	2.178	3.27	0.00	6.6	93.4	0.0	-3.67	0.72	0.78	2.19	3.2	0.003	0.60	0.0	0.04	23.69	0.00	2.138	9.03	0.19	4.8	95.2	0.0	-1.42	1.25	0.74	0.83	1.78	20503	1839	16	290	1	0	0	logfile
✔	6KiQ	9997	2022-12-13	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.33	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.004	0.78	0.0	0.04	17.28	0.01	2.003	12.07	0.24	12.3	87.1	0.6	-2.76	1.16	0.62	0.75	1.43	15093	968	3	0	0	0	7444	logfile
✔	6Kio	9996	2022-12-13	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.34	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.72	0.0	0.04	17.11	0.00	2.004	11.80	0.12	7.1	92.5	0.4	-1.30	1.67	0.65	0.77	1.34	15091	968	3	0	0	0	7442	logfile
✔	6KHJ	9990	2022-12-16	2019-07-15	3.0	3.14	—	3.1	0.009	1.30	0.0	0.06	15.80	0.01	2.258	7.70	0.41	7.8	92.1	0.0	-4.07	0.73	0.86	3.41	3.0	0.003	0.66	0.0	0.04	16.58	0.00	2.127	13.06	1.44	7.6	92.3	0.0	0.08	1.14	0.74	0.88	2.50	31027	3877	26	0	20	0	0	logfile
✔	6KHi	9989	2022-12-18	2019-07-15	3.0	3.34	—	3.3	0.008	1.25	0.0	0.09	16.08	0.01	2.257	8.27	0.27	8.9	91.0	0.0	-4.35	0.73	0.84	2.98	3.3	0.004	0.71	0.0	0.04	16.73	0.00	2.151	14.02	2.28	8.7	91.3	0.0	-0.61	1.13	0.74	0.86	2.72	32635	4095	29	0	19	0	0	logfile
✔	6KG7	9975	2022-12-21	2019-07-11	3.8	4.04	—	3.8	0.003	0.59	0.0	0.04	12.94	0.00	2.223	9.33	0.00	5.7	94.3	0.0	-1.77	0.76	0.83	2.35	3.8	0.002	0.61	0.0	0.04	14.51	0.00	2.125	9.17	0.14	4.8	95.2	0.0	0.87	0.43	0.76	0.83	1.87	44892	5451	6	0	12	0	0	logfile
✘	6KFK	9974	2022-12-19	2019-07-08	4.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68034	9246	23	0	0	0	0	logfile
✔	6KFH	9973	2022-12-14	2019-07-07	3.6	3.70	—	3.7	0.007	0.73	0.0	0.05	14.75	0.00	2.255	9.85	0.00	12.3	87.7	0.0	-3.15	0.66	0.82	0.94	3.7	0.003	0.73	0.0	0.04	17.63	0.00	2.094	9.87	0.63	8.3	91.7	0.0	0.08	0.63	0.63	0.82	1.07	20840	2544	8	0	0	0	0	logfile
✔	6KFG	9972	2022-12-14	2019-07-07	3.8	3.91	—	3.9	0.007	0.77	0.0	0.05	14.04	0.00	2.148	13.10	0.67	11.5	88.5	0.0	-4.38	0.63	0.82	1.64	3.9	0.004	0.77	0.0	0.04	16.57	0.00	2.157	13.06	0.92	8.7	91.3	0.0	-0.44	1.36	0.63	0.81	1.60	22264	2704	8	0	0	0	0	logfile
✔	6KFF	9971	2022-12-14	2019-07-07	3.8	3.93	—	3.9	0.004	0.60	0.0	0.04	15.08	0.00	2.182	8.35	0.35	9.2	90.8	0.0	-2.57	0.67	0.82	1.08	3.9	0.004	0.67	0.0	0.04	17.31	0.00	2.194	10.18	0.93	8.5	91.5	0.0	0.14	0.59	0.63	0.82	0.76	21192	2576	8	0	0	0	0	logfile
✔	6KF3	9960	2022-12-15	2019-07-06	3.9	4.00	3.77	4.0	0.008	1.33	1.0	0.07	12.71	0.01	2.102	4.59	4.74	13.7	85.5	0.8	-5.00	0.71	0.74	1.75	4.0	0.003	0.81	0.0	0.05	15.66	0.01	1.996	11.56	0.39	12.3	87.6	0.2	-2.48	2.21	0.72	0.76	1.17	26375	3297	15	0	6	0	0	logfile
✔	7CGP	9958	2022-12-12	2020-07-01	3.7	3.87	—	3.8	0.006	0.66	0.0	0.04	14.71	0.00	1.852	10.54	0.53	5.1	94.9	0.0	-2.68	0.68	0.81	1.54	3.8	0.005	0.97	0.0	0.05	17.65	0.00	2.092	17.48	0.75	4.2	95.8	0.0	0.45	1.49	0.69	0.82	1.03	12433	1569	16	0	1	0	0	logfile
✘	6KAF	9957	2022-12-19	2019-06-22	3.73	3.95	—	3.7	0.014	1.69	0.0	0.10	16.92	0.01	1.212	7.91	0.62	10.0	90.0	0.1	-3.68	0.78	0.73	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104363	9607	104	0	552	0	0	logfile
✘	6KAD	9956	2022-12-19	2019-06-21	3.4	3.59	—	3.5	0.011	1.60	0.0	0.07	16.10	0.02	1.201	7.96	0.67	7.4	92.6	0.0	-5.09	0.77	0.84	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105342	9734	94	0	560	0	0	logfile
✘	6KAC	9955	2022-12-19	2019-06-21	2.7	2.84	—	2.8	0.011	1.49	0.0	0.07	14.98	0.02	1.198	8.41	0.64	4.9	95.0	0.1	-4.64	0.72	0.84	4.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77947	7858	126	0	318	595	0	logfile
✔	6KA4	9954	2022-12-13	2019-06-20	3.4	3.49	—	3.4	0.006	0.82	0.0	0.05	13.68	0.01	2.076	15.29	0.00	5.0	95.0	0.0	-0.10	0.77	0.83	1.80	3.4	0.003	0.57	0.0	0.04	16.06	0.00	2.162	8.46	0.15	3.4	96.6	0.0	1.24	0.48	0.79	0.85	1.09	17500	2136	4	0	0	0	0	logfile
✔	6K9Q	9952	2022-12-15	2019-06-17	3.1	3.28	—	3.5	0.007	1.09	4.0	0.06	11.35	0.01	1.554	9.56	0.29	6.3	93.6	0.1	-3.33	0.51	0.77	2.45	3.5	0.003	0.69	0.0	0.04	14.56	0.00	2.075	17.03	0.53	5.4	94.6	0.0	-1.21	0.58	0.51	0.80	1.91	76902	10451	26	0	0	0	0	logfile
✔	6K9L	9950	2022-12-16	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.79	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.67	0.0	0.04	9.90	0.00	2.097	10.64	0.00	6.5	93.5	0.0	0.79	1.78	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6K9F	9948	2022-12-13	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.16	0.0	0.05	17.89	0.00	2.058	27.39	0.42	1.2	98.8	0.0	-0.22	3.70	0.67	0.84	0.57	8484	1044	12	0	0	0	0	logfile

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