Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H16	34426	2022-12-14	2022-09-30	3.35534	3.37	3.29	3.4	0.006	0.84	0.0	0.06	13.42	0.01	2.223	3.09	0.00	3.0	97.0	0.0	-0.98	0.75	0.83	3.12	3.4	0.003	0.55	0.0	0.04	14.66	0.00	2.128	4.54	0.33	3.2	96.8	0.0	-0.20	1.40	0.76	0.85	2.74	21934	2754	6	0	32	0	0	logfile
✔	8H15	34425	2022-12-14	2022-09-30	3.14182	3.18	3.11	3.2	0.011	1.02	1.0	0.07	13.97	0.01	2.182	2.86	0.00	5.5	94.5	0.0	-1.79	0.75	0.83	3.70	3.2	0.003	0.55	0.0	0.04	15.11	0.00	2.121	4.13	0.16	3.2	96.8	0.0	-0.05	1.39	0.75	0.83	2.70	22813	2888	6	0	18	0	0	logfile
✔	8H14	34424	2022-12-15	2022-09-30	3.39	3.39	3.33	3.4	0.005	0.93	6.0	0.06	13.70	0.01	2.177	2.52	1.35	3.6	96.4	0.0	-0.84	0.78	0.84	2.92	3.4	0.004	0.61	0.0	0.05	14.57	0.00	2.200	3.77	0.45	3.1	96.9	0.0	-0.30	0.39	0.80	0.88	2.83	24750	3087	6	0	45	0	0	logfile
✔	8H13	34423	2022-12-14	2022-09-30	4.05	4.03	4.00	4.0	0.004	0.84	0.0	0.05	14.07	0.01	2.254	3.85	0.83	5.0	95.0	0.0	-1.27	0.76	0.79	—	4.0	0.003	0.59	0.0	0.04	13.80	0.00	2.174	7.10	0.00	4.4	95.6	0.0	-0.11	0.44	0.76	0.78	—	22113	2793	6	0	21	0	0	logfile
✔	8H12	34422	2022-12-15	2022-09-30	3.44681	3.52	3.40	3.5	0.006	0.78	0.0	0.06	13.75	0.01	2.253	2.70	0.00	4.0	96.0	0.0	-2.04	0.71	0.84	3.55	3.5	0.003	0.54	0.0	0.05	15.18	0.00	2.068	4.67	0.23	2.9	97.1	0.0	-0.62	0.33	0.71	0.85	2.93	24221	3022	9	0	45	0	0	logfile
✔	8H11	34421	2022-12-15	2022-09-30	2.72	2.91	2.73	2.9	0.006	0.81	0.0	0.05	12.33	0.01	2.250	2.71	0.04	3.4	96.6	0.0	-1.16	0.79	0.85	3.06	2.9	0.003	0.54	0.0	0.04	14.52	0.00	2.146	4.43	1.41	3.4	96.6	0.0	-0.01	0.33	0.80	0.87	2.78	23566	2945	7	0	39	0	0	logfile
✔	8H10	34420	2022-12-15	2022-09-30	2.99	3.22	3.06	3.2	0.008	0.88	0.0	0.05	12.77	0.01	2.304	2.91	0.64	3.1	96.9	0.0	-1.07	0.81	0.85	2.83	3.2	0.003	0.57	0.0	0.04	14.50	0.00	2.227	5.07	1.46	3.3	96.7	0.0	-0.14	0.41	0.81	0.87	2.94	24882	3078	9	0	54	0	0	logfile
✔	8H0Z	34419	2022-12-15	2022-09-30	2.99	3.23	3.00	3.2	0.008	0.90	0.0	0.06	12.37	0.01	2.229	3.28	0.00	4.5	95.5	0.0	-1.47	0.81	0.85	3.39	3.2	0.003	0.57	0.0	0.04	13.97	0.00	2.180	5.12	1.45	3.8	96.2	0.0	-0.52	0.33	0.81	0.86	3.04	25047	3102	9	0	51	0	0	logfile
✘	8H0Y	34418	2022-12-18	2022-09-30	2.85	3.06	2.88	3.0	0.008	0.82	0.0	0.06	13.16	0.01	2.274	2.64	0.00	3.2	96.8	0.0	-1.19	0.81	0.86	3.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24999	3094	6	0	52	0	0	logfile
✔	8H0X	34417	2022-12-15	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.90	0.0	0.06	12.63	0.01	2.257	1.82	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	2.7	0.003	0.59	0.0	0.05	14.25	0.00	2.198	3.43	1.78	3.0	97.0	0.0	0.00	1.17	0.82	0.88	3.72	25122	3117	6	0	48	0	0	logfile
✔	8GWo	34318	2022-12-14	2022-09-17	3.8	4.21	3.91	4.0	0.008	0.82	0.0	0.05	15.18	0.01	1.755	15.78	0.66	8.8	91.1	0.1	-2.55	0.81	0.82	1.08	4.0	0.003	0.63	0.0	0.04	15.52	0.00	2.170	12.56	0.44	6.9	93.1	0.0	-1.58	0.51	0.82	0.82	0.85	21880	2655	12	53	9	0	0	logfile
✘	8GWA	34307	2022-12-20	2022-09-16	2.9	3.13	3.01	7.0	0.017	1.77	0.0	0.16	16.93	0.02	1.107	14.98	0.00	5.7	94.2	0.2	-1.01	0.17	-0.02	0.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37660	4006	27	0	160	0	0	logfile
✔	8GVK	32099	2022-12-11	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.005	0.91	0.0	0.05	15.61	0.01	2.211	9.60	3.49	5.3	93.8	0.9	-1.03	0.88	0.74	0.85	6.27	3567	476	8	0	0	19	0	logfile
✔	8GUY	34281	2022-12-13	2022-09-14	4.18	4.57	4.26	4.3	0.005	1.00	0.0	0.06	14.55	0.01	2.249	6.18	0.12	10.0	90.0	0.0	-4.23	0.83	0.80	—	4.3	0.002	0.66	0.0	0.04	13.79	0.00	2.197	10.97	0.25	7.7	92.3	0.0	-2.21	1.63	0.83	0.79	—	14222	1762	6	0	0	0	0	logfile
✔	8GUD	34273	2022-12-11	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.80	0.01	2.116	20.53	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.003	0.65	0.0	0.04	17.30	0.00	2.157	17.22	2.51	4.9	95.1	0.0	-1.29	1.14	0.49	0.57	1.10	6814	835	1	0	1	0	0	logfile
✔	8GUB	34272	2022-12-12	2022-09-11	2.73	2.94	2.82	3.0	0.008	0.62	0.0	0.04	14.24	0.00	1.994	34.74	0.17	4.8	95.2	0.0	-0.28	0.51	0.65	3.44	3.0	0.004	0.60	0.0	0.04	17.14	0.00	2.182	9.33	2.00	3.8	96.2	0.0	-0.04	1.20	0.66	0.78	3.20	10358	1253	3	0	1	0	0	logfile
✔	8GS6	34221	2022-12-15	2022-09-05	2.86	3.44	2.87	3.3	0.004	0.59	0.0	0.05	14.61	0.00	2.140	6.33	0.00	4.4	95.6	0.0	-0.45	0.83	0.84	2.81	3.3	0.003	0.59	0.0	0.05	15.82	0.00	2.162	6.04	1.20	4.9	95.1	0.0	-0.26	0.32	0.83	0.85	2.68	24538	3058	11	0	41	0	0	logfile
✔	8GS2	34218	2022-12-13	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.58	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.003	0.51	0.0	0.04	15.16	0.00	2.176	6.79	1.74	1.8	98.2	0.0	1.33	1.32	0.74	0.90	4.27	16935	1916	7	64	4	0	0	logfile
✔	8GQY	34203	2022-12-12	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.003	0.66	0.0	0.04	15.13	0.00	2.173	7.42	0.60	1.6	98.4	0.0	-0.24	1.07	0.66	0.86	2.16	9515	1265	5	0	0	0	0	logfile
✔	8GoF	34177	2022-12-11	2022-08-24	3.0	2.97	3.06	3.1	0.006	0.80	0.0	0.05	12.71	0.01	2.269	7.05	0.00	2.5	97.5	0.0	-6.52	0.44	0.81	3.59	3.1	0.003	0.56	0.0	0.04	14.48	0.00	2.245	8.70	0.57	2.0	98.0	0.0	1.14	1.49	0.44	0.82	2.90	3299	407	1	0	1	0	0	logfile

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