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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6CNN | 7538 | 2024-03-16 | 2018-03-08 | 3.5 | 3.63 | — | 3.6 | 0.008 | 1.07 | 0.0 | 0.05 | 12.90 | 0.01 | 2.016 | 1.24 | 0.00 | 4.0 | 96.0 | 0.0 | -4.29 | 0.66 | 0.83 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15740 | 2024 | 16 | 0 | 28 | 0 | 0 | logfile |
✘ | 8C06 | 16355 | 2024-03-19 | 2022-12-16 | 2.7 | 2.32 | 2.57 | 2.7 | 0.003 | 0.76 | 0.0 | 0.05 | 13.59 | 0.01 | 2.333 | 2.28 | 0.00 | 5.5 | 94.5 | 0.0 | -1.51 | 0.67 | 0.75 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25324 | 3298 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 5W9o | 8790 | 2024-03-22 | 2017-06-23 | 4.5 | 4.59 | 4.45 | 4.5 | 0.013 | 1.66 | 0.0 | 0.08 | 10.49 | 0.01 | 1.325 | 7.98 | 0.08 | 3.9 | 95.4 | 0.7 | 1.29 | 0.73 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KAF | 9957 | 2024-03-21 | 2019-06-22 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104363 | 9607 | 104 | 0 | 552 | 0 | 0 | logfile |
✘ | 6PK7 | 20355 | 2024-03-17 | 2019-06-28 | 3.1 | 3.55 | — | 3.5 | 0.011 | 1.25 | 8.0 | 0.07 | 12.86 | 0.01 | 1.655 | 11.20 | 0.41 | 8.6 | 91.2 | 0.2 | -4.98 | 0.66 | 0.81 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17820 | 2228 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 5XNM | 6742 | 2024-03-19 | 2017-05-23 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92842 | 8712 | 90 | 0 | 486 | 0 | 0 | logfile |
✘ | 6VFi | 21173 | 2024-03-11 | 2020-01-05 | 4.54 | 4.63 | 4.96 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58488 | 7560 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 8B5L | 15860 | 2024-03-22 | 2022-09-23 | 2.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145148 | 7621 | 64 | 3890 | 183 | 0 | 0 | logfile |
✘ | 6Zoo | 11326 | 2024-03-23 | 2020-07-07 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38497 | 3341 | 33 | 0 | 243 | 2 | 0 | logfile |
✘ | 7BR7 | 30158 | 2024-03-16 | 2020-03-26 | 4.3 | 3.99 | — | 4.0 | 0.006 | 0.94 | 0.0 | 0.06 | 15.20 | 0.01 | 1.573 | 8.92 | 0.70 | 6.8 | 93.2 | 0.0 | -4.57 | 0.44 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73138 | 9263 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VPV | 21320 | 2024-03-18 | 2020-02-04 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72192 | 6753 | 60 | 0 | 384 | 0 | 0 | logfile |
✘ | 7M6Q | 23704 | 2024-03-16 | 2021-03-26 | 2.91 | 3.75 | 2.97 | 3.5 | 0.009 | 1.16 | 5.0 | 0.07 | 15.90 | 0.01 | 2.289 | 5.71 | 0.00 | 3.1 | 96.9 | 0.0 | -0.39 | 0.82 | 0.82 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14725 | 1800 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 7BiN | 12192 | 2024-03-18 | 2021-01-12 | 3.2 | 1.68 | 3.08 | 3.1 | 0.010 | 0.90 | 0.0 | 0.05 | 15.16 | 0.01 | 1.043 | 16.06 | 0.04 | 9.8 | 90.1 | 0.1 | -0.58 | 0.53 | 0.67 | 1.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81721 | 10887 | 56 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YEZ | 10798 | 2024-03-24 | 2020-03-25 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39217 | 3438 | 35 | 0 | 244 | 2 | 0 | logfile |
✘ | 5W9J | 8785 | 2024-03-22 | 2017-06-23 | 4.8 | 4.91 | 5.09 | 4.7 | 0.013 | 1.57 | 0.0 | 0.07 | 11.98 | 0.02 | 1.881 | 5.79 | 0.90 | 4.0 | 94.8 | 1.2 | 0.53 | 0.78 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7TLD | 25988 | 2024-03-19 | 2022-01-18 | 2.89 | 3.35 | — | 3.3 | 0.013 | 1.80 | 0.0 | 0.09 | 13.31 | 0.01 | 2.524 | 0.07 | 0.94 | 5.2 | 94.6 | 0.2 | -1.25 | 0.33 | 0.48 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22812 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7FDi | 31544 | 2024-03-11 | 2021-07-16 | 3.12 | 3.24 | — | 3.2 | 0.005 | 0.64 | 0.0 | 0.05 | 15.54 | 0.00 | 2.109 | 15.52 | 0.15 | 3.7 | 96.3 | 0.0 | -0.19 | 0.61 | 0.78 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6403 | 788 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 8AG4 | 15415 | 2024-03-15 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BLZ | 12228 | 2024-03-15 | 2021-01-19 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55800 | 2817 | 41 | 0 | 206 | 249 | 21916 | logfile |
✘ | 5XNL | 6741 | 2024-03-20 | 2017-05-23 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |