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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8HC8 | 34655 | 2024-03-10 | 2022-11-01 | 3.95 | 4.00 | 3.84 | 4.0 | 0.003 | 0.71 | 0.0 | 0.05 | 16.60 | 0.01 | 2.317 | 5.70 | 0.56 | 4.2 | 95.8 | 0.0 | -1.17 | 0.64 | 0.70 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4832 | 628 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6oo5 | 20146 | 2024-03-17 | 2019-04-22 | 4.2 | 4.30 | 4.10 | 4.2 | 0.012 | 1.05 | 0.0 | 0.06 | 10.64 | 0.01 | 2.246 | 3.18 | 0.00 | 4.5 | 95.5 | 0.0 | -2.74 | 0.65 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17548 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7TES | 25851 | 2024-03-21 | 2022-01-05 | 4.7 | 8.44 | 4.80 | 4.3 | 0.004 | 0.92 | 0.0 | 0.05 | 14.89 | 0.01 | 2.261 | 9.08 | 1.27 | 8.9 | 90.9 | 0.3 | -4.01 | 0.82 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31306 | 3986 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LX0 | 23563 | 2024-03-16 | 2021-03-02 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72462 | 6699 | 60 | 0 | 447 | 0 | 0 | logfile |
✘ | 7CH9 | 30372 | 2024-03-16 | 2020-07-05 | 3.5 | 3.92 | — | 3.8 | 0.005 | 0.82 | 0.0 | 0.04 | 18.11 | 0.00 | 2.032 | 18.63 | 10.34 | 9.6 | 90.4 | 0.0 | -4.56 | 0.69 | 0.78 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15978 | 2126 | 19 | 0 | 10 | 0 | 0 | logfile |
✘ | 7TJ9 | 25920 | 2024-03-15 | 2022-01-14 | 2.9 | 3.19 | — | 3.1 | 0.017 | 1.02 | 0.0 | 0.06 | 18.48 | 0.01 | 2.167 | 6.06 | 0.09 | 5.0 | 95.0 | 0.0 | 0.12 | 0.56 | 0.82 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10975 | 1273 | 5 | 0 | 24 | 0 | 0 | logfile |
✘ | 7MD3 | 23764 | 2024-03-14 | 2021-04-03 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45992 | 3133 | 13 | 0 | 8 | 0 | 22961 | logfile |
✘ | 7VDD | 31914 | 2024-03-15 | 2021-09-06 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11940 | 1044 | 10 | 0 | 0 | 0 | 3736 | logfile |
✘ | 6LMK | 0917 | 2024-03-14 | 2019-12-26 | 3.7 | 3.89 | — | 3.8 | 0.009 | 0.96 | 0.0 | 0.06 | 15.10 | 0.01 | 2.283 | 7.02 | 0.62 | 6.5 | 93.5 | 0.0 | -4.19 | 0.68 | 0.82 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9240 | 1178 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F7X | 28912 | 2024-03-11 | 2022-11-20 | 3.28 | 3.38 | 3.18 | 3.4 | 0.004 | 0.88 | 0.0 | 0.05 | 8.64 | 0.01 | 2.274 | 2.87 | 0.10 | 2.1 | 97.9 | 0.0 | 0.54 | 0.59 | 0.78 | 2.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8902 | 1145 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CS9 | 26960 | 2024-03-12 | 2022-05-12 | 2.74 | 1.95 | — | 1.6 | 0.006 | 0.85 | 0.0 | 0.05 | 18.63 | 0.01 | 2.218 | 10.20 | 3.66 | 2.2 | 97.5 | 0.3 | 0.33 | 0.82 | 0.81 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60944 | 7677 | 39 | 0 | 27 | 268 | 0 | logfile |
✘ | 7Z10 | 14436 | 2024-03-15 | 2022-02-24 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12574 | 1556 | 13 | 0 | 9 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2024-03-10 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 7L1S | 23117 | 2024-03-19 | 2020-12-15 | 3.6 | 2.22 | — | 2.3 | 0.011 | 1.81 | 37.0 | 0.12 | 14.87 | 0.01 | 2.011 | 4.65 | 4.07 | 3.3 | 96.6 | 0.2 | -0.43 | 0.62 | 0.68 | 1.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24176 | 3118 | 12 | 0 | 11 | 0 | 0 | logfile |
✘ | 6M5U | 30093 | 2024-03-15 | 2020-03-11 | 3.8 | 3.78 | — | 3.8 | 0.007 | 0.86 | 1.0 | 0.05 | 16.07 | 0.00 | 2.210 | 18.52 | 5.59 | 9.0 | 90.8 | 0.2 | -3.03 | 0.62 | 0.81 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10549 | 1359 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2024-03-14 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 14.79 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |
✘ | 7WY8 | 32887 | 2024-03-11 | 2022-02-15 | 2.83 | 2.24 | — | 2.0 | 0.007 | 0.81 | 0.0 | 0.05 | 12.03 | 0.01 | 2.220 | 1.00 | 0.00 | 4.1 | 95.9 | 0.0 | -0.39 | 0.76 | 0.76 | 3.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8049 | 1015 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6CNB | 7530 | 2024-03-25 | 2018-03-08 | 4.1 | 4.34 | — | 4.2 | 0.007 | 1.15 | 2.0 | 0.06 | 14.17 | 0.01 | 1.836 | 32.34 | 0.60 | 17.4 | 81.2 | 1.4 | -5.08 | 0.73 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47837 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✘ | 8B4o | 15851 | 2024-03-10 | 2022-09-20 | 2.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6156 | 772 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 7WGX | 32491 | 2024-03-19 | 2021-12-29 | 3.5 | 3.82 | — | 3.8 | 0.017 | 1.20 | 0.0 | 0.05 | 13.51 | 0.00 | 2.256 | 4.67 | 0.00 | 3.9 | 95.6 | 0.5 | -0.06 | 0.79 | 0.83 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25629 | 3165 | 21 | 0 | 60 | 0 | 0 | logfile |