Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S3S	10096	2022-12-12	2019-06-25	4.1	4.29	3.71	4.1	0.007	0.87	0.0	0.05	14.29	0.01	2.141	18.71	0.07	7.8	91.9	0.4	-3.54	0.74	0.83	—	4.1	0.004	0.86	0.0	0.05	14.07	0.00	2.127	17.10	0.00	5.7	94.1	0.2	0.73	1.87	0.74	0.82	—	12321	1569	10	0	0	0	0	logfile
✔	7JG9	22315	2022-12-14	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.55	0.0	0.20	7.47	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.2	0.004	0.98	0.0	0.09	6.50	0.00	2.170	3.19	0.00	14.9	85.0	0.1	-1.92	1.68	0.72	0.70	—	19569	4826	26	0	7	0	0	logfile
✔	7BTE	30177	2022-12-13	2020-04-01	4.2	4.34	—	4.2	0.006	0.70	0.0	0.05	15.02	0.00	1.835	13.95	13.76	12.7	87.3	0.0	-5.33	0.76	0.90	—	4.2	0.003	0.69	0.0	0.04	12.65	0.00	1.904	11.50	0.00	6.6	93.4	0.0	-1.84	1.49	0.75	0.89	—	14814	1894	13	0	10	0	0	logfile
✔	6UVR	20914	2022-12-14	2019-11-04	4.0	3.50	—	3.4	0.011	1.12	0.0	0.06	8.48	0.01	2.237	10.49	0.00	10.4	89.6	0.0	-5.14	0.62	0.76	—	3.4	0.003	0.55	0.0	0.04	12.92	0.00	2.127	6.16	0.00	5.8	94.2	0.0	2.54	1.43	0.65	0.80	—	22692	1920	12	0	0	0	9696	logfile
✔	7JG8	22314	2022-12-14	2020-07-18	3.3	2.35	3.38	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.003	0.83	0.0	0.08	5.47	0.00	2.289	1.81	0.00	7.8	92.1	0.1	-1.42	1.28	0.72	0.70	—	19573	4827	26	0	7	0	0	logfile
✔	6TGC	10498	2022-12-20	2019-11-15	4.1	4.96	—	4.1	0.016	1.86	2.0	0.08	20.20	0.01	1.835	102.01	15.44	22.0	76.1	1.9	-5.63	0.71	0.56	—	4.0	0.006	0.97	0.0	0.05	14.60	0.01	1.991	33.60	0.20	10.8	89.0	0.2	-1.77	1.22	0.73	0.61	—	33282	3806	6	0	808	0	0	logfile
✔	7JG7	22313	2022-12-14	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.15	0.0	0.00	7.25	0.01	2.136	3.94	0.00	14.0	85.9	0.1	-2.12	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✘	6LMK	0917	2022-12-18	2019-12-26	3.7	3.89	—	3.8	0.009	0.96	0.0	0.06	15.10	0.01	2.283	7.19	0.62	6.5	93.5	0.0	-4.19	0.68	0.82	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9240	1178	6	0	0	0	0	logfile
✘	6WBX	21600	2022-12-18	2020-03-27	3.5	3.82	3.55	3.7	0.012	1.07	0.0	0.06	13.49	0.01	2.190	4.07	0.11	7.9	92.0	0.1	-5.51	0.77	0.87	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9170	1264	1	0	2	0	0	logfile
✔	6JPQ	9870	2022-12-15	2019-03-27	4.44	5.93	—	7.2	0.006	1.13	0.0	0.06	12.18	0.01	2.195	10.56	0.57	9.1	90.9	0.0	-5.01	0.81	0.77	—	6.0	0.003	0.82	0.0	0.05	12.82	0.01	2.120	19.42	0.00	8.0	92.0	0.0	-2.05	1.77	0.82	0.80	—	27768	3462	6	0	0	0	0	logfile
✘	6W5U	21548	2022-12-18	2020-03-13	3.9	3.97	—	3.9	0.011	1.50	4.0	0.16	17.07	0.01	1.741	63.68	6.82	8.5	90.5	1.0	-2.76	0.61	0.76	1.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9474	1175	6	0	21	0	0	logfile
✘	6X80	22088	2022-12-19	2020-06-01	3.5	3.69	—	3.5	0.006	0.60	0.0	0.04	13.31	0.00	1.254	8.52	0.01	8.5	91.3	0.2	-2.33	0.48	0.90	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	97482	12628	44	0	374	0	0	logfile
✔	6UVS	20915	2022-12-13	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.65	0.0	0.04	9.80	0.01	1.873	2.08	0.00	11.8	88.2	0.0	1.29	0.87	0.73	0.86	—	17040	1920	12	0	0	0	5976	logfile
✔	6SMH	10235	2022-12-20	2019-08-21	4.3	4.36	—	4.3	0.009	1.33	2.0	0.07	17.19	0.04	0.292	54.51	14.61	12.0	85.8	2.2	-4.97	0.68	0.79	—	4.3	0.007	0.93	0.0	0.05	14.32	0.01	1.992	24.35	0.15	12.6	87.0	0.4	-2.46	2.72	0.69	0.81	—	39744	5025	16	0	0	0	0	logfile
✔	6YRK	10890	2022-12-16	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.68	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	4.1	0.004	0.73	0.0	0.04	14.00	0.00	2.076	22.57	0.00	6.3	93.6	0.1	-1.24	1.89	0.85	0.69	—	15058	1937	2	0	0	0	0	logfile
✔	6W5V	21549	2022-12-13	2020-03-13	4.0	4.11	—	4.0	0.008	1.35	4.0	0.18	17.76	0.01	1.979	62.59	9.99	7.0	92.3	0.7	-2.21	0.63	0.75	—	4.0	0.003	0.84	0.0	0.05	17.36	0.01	2.046	14.12	0.96	5.6	94.4	0.0	-0.47	0.87	0.63	0.77	—	10586	1307	9	0	24	0	0	logfile
✘	6VXM	21444	2022-12-18	2020-02-22	3.06	3.76	—	3.4	0.018	1.02	0.0	0.05	12.84	0.00	2.208	5.67	0.00	3.9	96.1	0.0	-2.02	0.75	0.81	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15064	1939	14	0	21	0	0	logfile
✔	7JG6	22312	2022-12-14	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.003	0.91	0.0	0.00	5.94	0.00	2.230	1.09	0.00	10.6	89.3	0.1	-1.07	1.66	0.70	0.68	—	19320	4819	20	0	11	0	0	logfile
✔	6XE6	22144	2022-12-11	2020-06-12	4.53	4.61	—	4.5	0.011	1.40	2.0	0.07	14.92	0.01	1.098	10.14	1.05	11.3	87.4	1.2	-4.98	0.52	0.76	—	4.5	0.003	0.76	0.0	0.04	13.55	0.00	2.180	13.85	0.00	9.8	89.7	0.5	-1.86	1.21	0.53	0.75	—	6530	826	1	0	6	0	0	logfile
✔	6V5C	21052	2022-12-12	2019-12-04	4.4	4.97	—	4.6	0.007	1.27	7.0	0.07	17.23	0.01	2.023	18.25	1.84	13.7	85.9	0.4	-4.86	0.81	0.80	—	4.6	0.003	0.74	0.0	0.04	15.60	0.00	2.058	16.78	0.00	12.7	87.3	0.0	-2.59	0.70	0.81	0.80	—	12251	1336	4	66	0	0	0	logfile

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