Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V02	26927	2023-04-24	2022-05-09	4.97	8.16	5.87	4.6	0.006	0.93	0.0	0.06	13.46	0.00	2.048	13.24	0.65	4.8	95.1	0.0	-1.12	0.83	0.64	—	4.7	0.003	0.64	0.0	0.04	13.92	0.00	2.143	22.35	0.00	4.0	96.0	0.0	-0.14	1.11	0.91	0.81	—	17417	2070	9	29	0	0	0	logfile
✔	4UQ8	2676	2023-04-28	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.47	0.00	2.110	23.19	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	7STi	25429	2023-04-24	2021-11-13	4.9	6.34	—	4.3	0.004	0.67	0.0	0.04	13.50	0.00	2.001	25.75	0.20	7.8	92.0	0.2	-1.35	0.89	0.83	—	4.3	0.004	0.65	0.0	0.04	13.42	0.00	2.110	26.65	0.00	9.2	90.6	0.2	-1.29	1.61	0.89	0.84	—	13531	1678	3	0	0	0	0	logfile
✔	7PTL	13630	2023-04-26	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	16.11	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	21.29	0.01	1.737	86.57	0.00	0.0	0.0	0.0	—	3.52	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	8EYY	28724	2023-04-25	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.002	0.57	0.0	0.04	13.19	0.00	2.184	20.45	0.00	6.9	93.1	0.1	-1.01	1.12	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✘	4CE4	2490	2023-04-23	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	6Q0J	20550	2023-04-20	2019-08-01	4.9	4.69	—	4.1	0.012	1.53	3.0	0.09	8.17	0.00	2.229	2.10	0.00	5.4	93.3	1.3	-2.84	0.74	0.63	—	4.2	0.003	0.67	0.0	0.04	8.63	0.00	1.913	6.90	0.00	7.0	92.6	0.4	-0.12	1.64	0.85	0.80	—	8213	1633	8	0	6	0	0	logfile
✔	8EXQ	28659	2023-04-21	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.74	0.0	0.04	12.89	0.00	2.068	17.98	0.00	5.3	94.5	0.2	-0.50	2.54	0.58	0.63	—	9304	1108	4	0	2	0	0	logfile
✔	6oCE	20017	2023-04-22	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.56	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.76	0.0	0.04	12.52	0.01	2.176	12.97	0.00	12.3	87.7	0.0	-2.82	1.19	0.46	0.63	—	11228	1378	2	0	0	0	0	logfile
✔	7ELE	31182	2023-04-21	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	19.44	0.01	2.210	17.86	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.5	0.003	0.75	0.0	0.04	16.18	0.00	2.040	28.54	0.00	9.8	90.0	0.2	-1.98	1.67	0.88	0.77	—	10733	1137	2	83	0	0	0	logfile
✔	8EJ5	28176	2023-04-20	2022-09-16	4.9	4.58	4.63	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.003	0.77	0.0	0.04	14.35	0.00	2.123	17.17	0.00	4.2	95.5	0.3	-0.12	2.26	0.46	0.75	—	5818	727	4	0	0	0	0	logfile
✔	6UPK	20840	2023-04-23	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.94	0.0	0.05	20.35	0.01	1.570	20.39	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.005	0.73	0.0	0.04	22.63	0.00	1.891	37.90	0.00	7.3	92.7	0.0	-2.03	2.96	0.90	0.84	—	13861	1314	10	144	54	0	0	logfile
✔	7PD4	13330	2023-04-20	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.003	0.78	0.0	0.04	13.56	0.00	2.126	18.85	0.00	5.8	94.2	0.0	-0.39	1.28	0.73	0.73	—	6676	842	1	0	0	0	0	logfile
✔	3iZK	5247	2023-04-21	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.75	0.0	0.04	13.81	0.00	2.233	21.48	0.00	2.7	97.3	0.0	-0.42	1.96	0.75	0.55	—	58448	7856	16	0	0	0	0	logfile
✔	6PWC	20505	2023-04-20	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.004	0.75	0.0	0.04	6.37	0.00	2.094	19.59	0.00	7.2	92.8	0.0	-0.38	1.57	0.61	0.59	—	5879	1055	5	0	0	0	0	logfile
✔	5J8V	8073	2023-04-27	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✘	8EP0	28494	2023-04-27	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.79	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✔	7KPW	22990	2023-04-20	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	5LMV	4083	2023-04-21	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.004	0.78	0.0	0.04	17.42	0.01	1.879	35.96	0.04	8.0	91.5	0.5	-1.87	2.22	0.78	0.77	—	59470	3124	30	1612	4	0	0	logfile
✔	7MoA	23922	2023-04-22	2021-05-01	4.9	4.75	—	4.0	0.011	1.37	0.0	0.08	18.23	0.01	1.983	27.58	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.003	0.72	0.0	0.05	13.33	0.00	2.133	15.77	0.00	4.8	95.2	0.1	-1.11	0.92	0.84	0.78	—	12511	1580	5	0	12	0	0	logfile

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