Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HV9	0288	2022-07-08	2018-10-10	4.98	4.88	—	4.5	0.012	1.86	14.0	0.09	12.25	0.01	1.447	9.27	0.49	10.9	88.8	0.3	-4.02	0.78	0.66	—	4.5	0.010	0.99	1.0	0.04	13.60	0.01	1.541	18.29	0.04	8.9	91.1	0.1	-1.85	1.66	0.79	0.68	—	47617	6040	18	49	4	0	0	logfile
✔	4UQ8	2676	2022-07-06	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.100	23.02	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	5VFR	8665	2022-07-06	2017-04-09	4.9	5.02	—	4.8	0.006	1.24	5.0	0.07	11.75	0.01	2.042	10.75	0.74	9.6	89.8	0.6	-4.40	0.71	0.63	—	4.8	0.003	0.81	0.0	0.05	13.09	0.00	2.038	20.59	0.06	9.4	90.6	0.1	-1.74	1.26	0.71	0.69	—	99908	12868	51	0	5	0	0	logfile
✘	6UXB	20932	2022-07-03	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✘	6FVX	4323	2022-07-03	2018-03-05	4.9	4.97	—	4.9	0.036	3.46	834.0	0.21	17.27	0.03	1.000	2.07	2.81	5.4	92.9	1.7	-2.42	0.52	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	110471	14020	53	0	12	0	0	logfile
✘	5Z58	6891	2022-07-06	2018-01-17	4.9	5.11	—	4.8	0.011	1.47	31.0	0.09	14.16	0.01	1.413	28.33	4.95	6.4	92.4	1.2	-2.65	0.58	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94673	12915	51	390	12	0	0	logfile
✔	5U8T	8519	2022-07-07	2016-12-15	4.9	5.42	—	5.0	0.008	1.56	0.0	0.06	15.87	0.01	1.737	40.35	8.25	10.1	88.9	1.0	-4.31	0.87	0.80	—	5.0	0.003	0.96	0.0	0.04	14.20	0.00	2.090	22.68	0.04	8.9	90.1	0.9	-1.32	0.90	0.87	0.81	—	40788	5089	15	14	3	0	0	logfile
✘	4CE4	2490	2022-07-04	2013-11-08	4.9	5.03	—	5.0	0.004	0.79	0.0	0.04	14.48	0.00	1.398	13.86	2.64	5.3	94.5	0.2	-2.30	0.47	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	3J1B	5391	2022-07-03	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.76	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.80	0.0	0.05	14.96	0.01	2.173	13.93	0.00	5.4	93.8	0.8	0.69	2.24	0.78	0.69	—	62992	8304	16	0	0	0	0	logfile
✔	6GNi	0044	2022-07-03	2018-05-30	4.9	4.56	4.23	4.2	0.008	1.48	0.0	0.10	15.17	0.01	1.943	21.63	3.68	6.3	91.3	2.4	-3.39	0.44	0.63	—	4.2	0.003	0.65	0.0	0.04	13.71	0.01	1.875	13.47	0.07	2.9	97.0	0.2	0.79	1.66	0.48	0.73	—	12937	1632	6	0	4	0	0	logfile
✘	6P7N	20267	2022-07-07	2019-06-06	4.9	9.02	6.14	4.9	0.002	0.53	0.0	0.04	14.46	0.00	2.152	6.68	1.33	5.6	94.4	0.0	-3.30	0.81	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20356	2352	10	52	4	0	0	logfile
✔	6PWC	20505	2022-07-03	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.71	0.0	0.04	6.38	0.00	2.135	12.03	0.00	6.0	94.0	0.0	-0.57	2.41	0.61	0.58	—	5879	1055	5	0	0	0	0	logfile
✘	6Q0J	20550	2022-07-03	2019-08-01	4.9	4.69	—	4.1	0.012	1.51	3.0	0.09	7.93	0.00	1.185	2.10	0.00	5.4	93.3	1.3	-2.84	0.74	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8213	1633	8	0	6	0	0	logfile
✔	6UPK	20840	2022-07-04	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.94	0.0	0.05	20.35	0.01	1.570	20.47	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.003	0.67	0.0	0.04	22.35	0.00	1.960	22.67	0.00	5.1	94.9	0.0	-1.43	2.95	0.90	0.83	—	13861	1314	10	144	54	0	0	logfile
✔	3iZK	5247	2022-07-03	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.79	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.0	0.003	0.75	0.0	0.04	13.21	0.00	2.241	26.30	0.00	3.5	96.5	0.0	-0.57	1.99	0.82	0.75	—	58448	7856	16	0	0	0	0	logfile
✘	5LMV	4083	2022-07-03	2016-08-01	4.9	6.86	6.64	6.7	0.007	1.33	34.0	0.11	20.11	0.01	0.977	14.23	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59470	3124	30	1612	4	0	0	logfile
✔	6SKM	10228	2022-07-03	2019-08-16	4.9	5.09	4.66	4.9	0.004	0.64	0.0	0.04	9.23	0.00	1.449	9.87	0.18	1.4	98.6	0.0	-1.03	0.68	0.74	—	4.9	0.004	0.81	0.0	0.05	12.83	0.01	2.119	21.20	0.18	3.1	96.9	0.0	0.18	2.76	0.70	0.80	—	10336	1320	6	0	0	0	0	logfile
✔	6oCE	20017	2022-07-03	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.65	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.74	0.0	0.04	12.55	0.01	2.180	10.99	0.00	12.6	87.4	0.0	-2.56	1.12	0.46	0.62	—	11228	1378	2	0	0	0	0	logfile
✔	7KPW	22990	2022-07-03	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	3JAP	3048	2022-07-06	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.55	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.004	0.80	0.0	0.04	19.12	0.01	1.219	25.22	0.03	10.0	89.2	0.8	-1.85	2.20	0.72	0.80	—	98333	7272	53	1869	255	0	0	logfile

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