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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HV9 | 0288 | 2022-12-22 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.25 | 0.01 | 1.447 | 9.27 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.008 | 0.85 | 0.0 | 0.04 | 13.45 | 0.00 | 2.033 | 16.06 | 0.02 | 8.6 | 91.4 | 0.1 | -1.61 | 1.66 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2022-12-13 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 13.46 | 0.00 | 2.048 | 13.33 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.04 | 0.00 | 2.133 | 21.48 | 0.05 | 3.7 | 96.3 | 0.0 | -0.22 | 1.12 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2022-12-16 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 67.37 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.50 | 0.00 | 2.103 | 29.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 5VFR | 8665 | 2022-12-17 | 2017-04-09 | 4.9 | 5.02 | — | 4.8 | 0.006 | 1.24 | 5.0 | 0.07 | 11.75 | 0.01 | 2.042 | 10.75 | 0.74 | 9.6 | 89.8 | 0.6 | -4.40 | 0.71 | 0.63 | — | 4.8 | 0.005 | 0.90 | 0.0 | 0.05 | 13.15 | 0.01 | 1.948 | 27.37 | 0.05 | 11.6 | 88.4 | 0.1 | -2.06 | 1.48 | 0.72 | 0.70 | — | 99908 | 12868 | 51 | 0 | 5 | 0 | 0 | logfile |
✔ | 6Q0J | 20550 | 2022-12-12 | 2019-08-01 | 4.9 | 4.69 | — | 4.1 | 0.012 | 1.53 | 3.0 | 0.09 | 8.19 | 0.00 | 2.229 | 2.10 | 0.00 | 5.4 | 93.3 | 1.3 | -2.84 | 0.74 | 0.63 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 8.66 | 0.00 | 1.906 | 7.06 | 0.00 | 7.0 | 92.7 | 0.4 | -0.02 | 1.64 | 0.85 | 0.79 | — | 8213 | 1633 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 5Z58 | 6891 | 2022-12-19 | 2018-01-17 | 4.9 | 5.11 | — | 4.8 | 0.011 | 1.48 | 31.0 | 0.10 | 14.17 | 0.01 | 1.766 | 28.33 | 4.95 | 6.4 | 92.4 | 1.2 | -2.65 | 0.58 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94673 | 12915 | 51 | 390 | 12 | 0 | 0 | logfile |
✔ | 3JAP | 3048 | 2022-12-17 | 2015-06-18 | 4.9 | 5.03 | 5.08 | 5.0 | 0.007 | 1.39 | 79.0 | 0.11 | 22.42 | 0.01 | 1.307 | 9.55 | 13.17 | 10.9 | 85.8 | 3.4 | -1.68 | 0.68 | 0.69 | — | 4.9 | 0.003 | 0.75 | 0.0 | 0.04 | 18.86 | 0.01 | 1.298 | 21.68 | 0.03 | 9.5 | 89.6 | 0.8 | -1.51 | 2.18 | 0.71 | 0.80 | — | 98333 | 7272 | 53 | 1869 | 255 | 0 | 0 | logfile |
✔ | 5LMV | 4083 | 2022-12-12 | 2016-08-01 | 4.9 | 6.86 | 6.64 | 6.7 | 0.008 | 1.34 | 34.0 | 0.11 | 20.12 | 0.01 | 0.977 | 14.24 | 15.18 | 9.6 | 87.9 | 2.5 | -1.98 | 0.70 | 0.58 | — | 6.7 | 0.004 | 0.77 | 0.0 | 0.04 | 17.20 | 0.01 | 1.936 | 37.56 | 0.00 | 7.8 | 91.6 | 0.5 | -1.70 | 1.73 | 0.77 | 0.76 | — | 59470 | 3124 | 30 | 1612 | 4 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2022-12-12 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.76 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.78 | 0.0 | 0.05 | 14.62 | 0.01 | 2.174 | 15.69 | 0.00 | 4.8 | 94.6 | 0.6 | 0.77 | 2.25 | 0.79 | 0.70 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UPK | 20840 | 2022-12-13 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.35 | 0.01 | 1.570 | 20.47 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | 7.0 | 0.003 | 0.64 | 0.0 | 0.04 | 22.09 | 0.00 | 1.979 | 24.37 | 0.00 | 5.6 | 94.4 | 0.0 | -1.29 | 2.94 | 0.90 | 0.83 | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2022-12-12 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.79 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.73 | 0.0 | 0.04 | 13.13 | 0.00 | 2.198 | 24.93 | 0.00 | 3.7 | 96.3 | 0.0 | -0.25 | 1.99 | 0.82 | 0.76 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2022-12-19 | 2013-11-08 | 4.9 | 5.03 | — | 5.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.48 | 0.00 | 1.398 | 13.86 | 2.64 | 5.3 | 94.5 | 0.2 | -2.30 | 0.47 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2022-12-14 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.66 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.71 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 1.17 | 0.0 | 0.04 | 8.49 | 0.00 | 2.196 | 5.78 | 0.32 | 12.5 | 85.4 | 2.2 | -1.41 | 0.81 | 0.75 | 0.75 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oCE | 20017 | 2022-12-12 | 2019-03-23 | 4.9 | 4.11 | — | 4.0 | 0.006 | 0.73 | 0.0 | 0.04 | 8.07 | 0.01 | 1.868 | 8.65 | 0.00 | 9.9 | 90.1 | 0.0 | -4.37 | 0.45 | 0.60 | — | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 12.43 | 0.01 | 2.241 | 11.69 | 0.00 | 12.1 | 87.9 | 0.0 | -2.46 | 1.14 | 0.46 | 0.62 | — | 11228 | 1378 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ZCS | 6913 | 2022-12-22 | 2018-02-20 | 4.9 | 5.50 | — | 6.9 | 0.003 | 0.77 | 0.0 | 0.05 | 9.66 | 0.01 | 2.281 | 3.34 | 0.05 | 5.6 | 94.3 | 0.1 | -5.28 | 0.85 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49176 | 6644 | 8 | 0 | 278 | 0 | 0 | logfile |
✔ | 6PWC | 20505 | 2022-12-11 | 2019-07-22 | 4.9 | 5.55 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.05 | 4.68 | 0.01 | 2.345 | 2.19 | 0.00 | 1.3 | 98.7 | 0.0 | -0.09 | 0.61 | 0.67 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.04 | 6.10 | 0.00 | 2.135 | 11.73 | 0.00 | 5.6 | 94.4 | 0.0 | 0.10 | 1.53 | 0.61 | 0.58 | — | 5879 | 1055 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5U8T | 8519 | 2022-12-20 | 2016-12-15 | 4.9 | 5.42 | — | 5.0 | 0.008 | 1.56 | 0.0 | 0.06 | 15.87 | 0.01 | 1.737 | 40.35 | 8.25 | 10.1 | 88.9 | 1.0 | -4.31 | 0.87 | 0.80 | — | 4.9 | 0.003 | 0.98 | 0.0 | 0.04 | 14.23 | 0.00 | 2.056 | 22.69 | 0.04 | 8.9 | 90.2 | 0.9 | -1.37 | 0.90 | 0.87 | 0.81 | — | 40788 | 5089 | 15 | 14 | 3 | 0 | 0 | logfile |
✔ | 6GNi | 0044 | 2022-12-13 | 2018-05-30 | 4.9 | 4.56 | 4.23 | 4.2 | 0.008 | 1.48 | 0.0 | 0.10 | 15.17 | 0.01 | 1.943 | 21.63 | 3.68 | 6.3 | 91.3 | 2.4 | -3.39 | 0.44 | 0.63 | — | 4.2 | 0.004 | 0.69 | 0.0 | 0.04 | 13.80 | 0.01 | 1.812 | 16.85 | 0.00 | 4.1 | 95.7 | 0.2 | 0.27 | 1.69 | 0.48 | 0.74 | — | 12937 | 1632 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 6P7N | 20267 | 2022-12-20 | 2019-06-06 | 4.9 | 9.02 | 6.14 | 4.9 | 0.002 | 0.53 | 0.0 | 0.04 | 14.46 | 0.00 | 2.152 | 6.68 | 1.33 | 5.6 | 94.4 | 0.0 | -3.30 | 0.81 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20356 | 2352 | 10 | 52 | 4 | 0 | 0 | logfile |
✔ | 6SKM | 10228 | 2022-12-12 | 2019-08-16 | 4.9 | 5.09 | 4.66 | 4.9 | 0.004 | 0.64 | 0.0 | 0.04 | 9.23 | 0.00 | 1.449 | 9.87 | 0.18 | 1.4 | 98.6 | 0.0 | -1.03 | 0.68 | 0.74 | — | 4.9 | 0.004 | 0.79 | 0.0 | 0.05 | 12.82 | 0.01 | 2.123 | 22.27 | 0.18 | 3.4 | 96.6 | 0.0 | 0.10 | 2.75 | 0.70 | 0.80 | — | 10336 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |