Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HV9	0288	2022-12-22	2018-10-10	4.98	4.88	—	4.5	0.012	1.86	14.0	0.09	12.25	0.01	1.447	9.27	0.49	10.9	88.8	0.3	-4.02	0.78	0.66	—	4.5	0.008	0.85	0.0	0.04	13.45	0.00	2.033	16.06	0.02	8.6	91.4	0.1	-1.61	1.66	0.79	0.68	—	47617	6040	18	49	4	0	0	logfile
✔	7V02	26927	2022-12-13	2022-05-09	4.97	8.16	5.87	4.6	0.006	0.93	0.0	0.06	13.46	0.00	2.048	13.33	0.65	4.8	95.1	0.0	-1.12	0.83	0.64	—	4.7	0.003	0.65	0.0	0.04	14.04	0.00	2.133	21.48	0.05	3.7	96.3	0.0	-0.22	1.12	0.91	0.81	—	17417	2070	9	29	0	0	0	logfile
✔	4UQ8	2676	2022-12-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	67.37	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.103	29.65	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	5VFR	8665	2022-12-17	2017-04-09	4.9	5.02	—	4.8	0.006	1.24	5.0	0.07	11.75	0.01	2.042	10.75	0.74	9.6	89.8	0.6	-4.40	0.71	0.63	—	4.8	0.005	0.90	0.0	0.05	13.15	0.01	1.948	27.37	0.05	11.6	88.4	0.1	-2.06	1.48	0.72	0.70	—	99908	12868	51	0	5	0	0	logfile
✔	6Q0J	20550	2022-12-12	2019-08-01	4.9	4.69	—	4.1	0.012	1.53	3.0	0.09	8.19	0.00	2.229	2.10	0.00	5.4	93.3	1.3	-2.84	0.74	0.63	—	4.2	0.003	0.67	0.0	0.04	8.66	0.00	1.906	7.06	0.00	7.0	92.7	0.4	-0.02	1.64	0.85	0.79	—	8213	1633	8	0	6	0	0	logfile
✘	5Z58	6891	2022-12-19	2018-01-17	4.9	5.11	—	4.8	0.011	1.48	31.0	0.10	14.17	0.01	1.766	28.33	4.95	6.4	92.4	1.2	-2.65	0.58	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94673	12915	51	390	12	0	0	logfile
✔	3JAP	3048	2022-12-17	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.55	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.003	0.75	0.0	0.04	18.86	0.01	1.298	21.68	0.03	9.5	89.6	0.8	-1.51	2.18	0.71	0.80	—	98333	7272	53	1869	255	0	0	logfile
✔	5LMV	4083	2022-12-12	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.12	0.01	0.977	14.24	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.004	0.77	0.0	0.04	17.20	0.01	1.936	37.56	0.00	7.8	91.6	0.5	-1.70	1.73	0.77	0.76	—	59470	3124	30	1612	4	0	0	logfile
✔	3J1B	5391	2022-12-12	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.76	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.78	0.0	0.05	14.62	0.01	2.174	15.69	0.00	4.8	94.6	0.6	0.77	2.25	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	6UPK	20840	2022-12-13	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.94	0.0	0.05	20.35	0.01	1.570	20.47	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.003	0.64	0.0	0.04	22.09	0.00	1.979	24.37	0.00	5.6	94.4	0.0	-1.29	2.94	0.90	0.83	—	13861	1314	10	144	54	0	0	logfile
✔	3iZK	5247	2022-12-12	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.79	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.73	0.0	0.04	13.13	0.00	2.198	24.93	0.00	3.7	96.3	0.0	-0.25	1.99	0.82	0.76	—	58448	7856	16	0	0	0	0	logfile
✘	4CE4	2490	2022-12-19	2013-11-08	4.9	5.03	—	5.0	0.004	0.79	0.0	0.04	14.48	0.00	1.398	13.86	2.64	5.3	94.5	0.2	-2.30	0.47	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	5J8V	8073	2022-12-14	2016-04-08	4.9	4.81	—	4.7	0.024	2.66	214.0	0.16	10.17	0.01	1.145	73.71	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	1.17	0.0	0.04	8.49	0.00	2.196	5.78	0.32	12.5	85.4	2.2	-1.41	0.81	0.75	0.75	—	73616	13812	4	0	0	0	0	logfile
✔	6oCE	20017	2022-12-12	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.65	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.74	0.0	0.04	12.43	0.01	2.241	11.69	0.00	12.1	87.9	0.0	-2.46	1.14	0.46	0.62	—	11228	1378	2	0	0	0	0	logfile
✘	5ZCS	6913	2022-12-22	2018-02-20	4.9	5.50	—	6.9	0.003	0.77	0.0	0.05	9.66	0.01	2.281	3.34	0.05	5.6	94.3	0.1	-5.28	0.85	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49176	6644	8	0	278	0	0	logfile
✔	6PWC	20505	2022-12-11	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.65	0.0	0.04	6.10	0.00	2.135	11.73	0.00	5.6	94.4	0.0	0.10	1.53	0.61	0.58	—	5879	1055	5	0	0	0	0	logfile
✔	5U8T	8519	2022-12-20	2016-12-15	4.9	5.42	—	5.0	0.008	1.56	0.0	0.06	15.87	0.01	1.737	40.35	8.25	10.1	88.9	1.0	-4.31	0.87	0.80	—	4.9	0.003	0.98	0.0	0.04	14.23	0.00	2.056	22.69	0.04	8.9	90.2	0.9	-1.37	0.90	0.87	0.81	—	40788	5089	15	14	3	0	0	logfile
✔	6GNi	0044	2022-12-13	2018-05-30	4.9	4.56	4.23	4.2	0.008	1.48	0.0	0.10	15.17	0.01	1.943	21.63	3.68	6.3	91.3	2.4	-3.39	0.44	0.63	—	4.2	0.004	0.69	0.0	0.04	13.80	0.01	1.812	16.85	0.00	4.1	95.7	0.2	0.27	1.69	0.48	0.74	—	12937	1632	6	0	4	0	0	logfile
✘	6P7N	20267	2022-12-20	2019-06-06	4.9	9.02	6.14	4.9	0.002	0.53	0.0	0.04	14.46	0.00	2.152	6.68	1.33	5.6	94.4	0.0	-3.30	0.81	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20356	2352	10	52	4	0	0	logfile
✔	6SKM	10228	2022-12-12	2019-08-16	4.9	5.09	4.66	4.9	0.004	0.64	0.0	0.04	9.23	0.00	1.449	9.87	0.18	1.4	98.6	0.0	-1.03	0.68	0.74	—	4.9	0.004	0.79	0.0	0.05	12.82	0.01	2.123	22.27	0.18	3.4	96.6	0.0	0.10	2.75	0.70	0.80	—	10336	1320	6	0	0	0	0	logfile

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