Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BP3	30143	2023-02-17	2020-03-21	3.8	4.06	—	4.1	0.007	1.05	0.0	0.06	16.16	0.01	2.235	6.34	0.00	7.4	92.6	0.0	-4.77	0.48	0.75	0.86	4.1	0.004	0.88	0.0	0.05	17.93	0.00	2.102	16.43	0.31	6.3	93.7	0.0	-0.15	1.32	0.49	0.74	1.21	6080	788	2	0	0	0	0	logfile
✔	7BX8	30236	2023-02-22	2020-04-17	3.6	3.87	3.75	3.8	0.008	1.31	0.0	0.08	13.92	0.01	2.299	10.31	1.37	11.6	88.4	0.1	-4.54	0.66	0.80	1.62	3.8	0.004	0.78	0.0	0.04	15.22	0.00	2.141	12.69	0.93	7.0	93.0	0.0	-1.05	1.74	0.67	0.83	1.55	16304	2232	4	0	0	0	0	logfile
✔	6NBH	0411	2023-02-19	2018-12-07	3.5	4.06	—	4.0	0.005	0.86	0.0	0.05	8.34	0.00	2.357	1.79	0.20	2.6	97.4	0.0	-1.51	0.62	0.76	1.73	4.0	0.003	0.72	0.0	0.04	15.72	0.00	2.193	11.77	0.51	2.7	97.3	0.0	0.46	2.20	0.58	0.74	1.66	9502	1159	7	0	10	0	0	logfile
✔	7VGJ	31971	2023-02-20	2021-09-16	3.98	3.67	—	3.5	0.007	0.91	0.0	0.05	15.32	0.01	2.160	26.07	0.48	16.4	83.6	0.0	-3.55	0.62	0.78	2.06	3.5	0.003	0.71	0.0	0.04	16.65	0.00	2.182	15.76	0.40	10.9	89.1	0.0	-1.97	0.44	0.61	0.77	1.69	11460	1414	3	0	1	0	0	logfile
✔	6V6D	21071	2023-02-20	2019-12-05	3.77	3.87	—	3.8	0.005	0.95	0.0	0.06	13.31	0.01	2.280	6.03	0.00	2.0	98.0	0.0	-2.17	0.63	0.85	3.10	3.8	0.003	0.69	0.0	0.04	16.07	0.00	2.153	6.45	0.30	2.1	97.9	0.0	1.50	0.66	0.63	0.85	2.95	11739	1463	7	0	0	0	0	logfile
✔	7XEW	33161	2023-02-23	2022-03-31	2.59	3.02	2.88	3.0	0.003	0.70	0.0	0.04	13.28	0.01	2.210	10.97	1.10	5.5	94.0	0.5	0.26	0.75	0.85	2.67	3.0	0.003	0.67	0.0	0.04	16.08	0.00	2.306	7.85	2.80	4.1	95.8	0.2	1.06	0.46	0.73	0.86	2.29	19988	2456	4	0	0	0	0	logfile
✔	6NBi	0412	2023-02-19	2018-12-07	4.0	4.43	—	4.3	0.005	0.88	0.0	0.05	8.85	0.00	2.337	2.35	0.31	2.8	97.2	0.0	-1.70	0.62	0.74	—	4.3	0.003	0.79	0.0	0.04	16.22	0.00	2.115	18.96	0.72	2.7	97.3	0.0	-0.13	2.54	0.64	0.78	—	9195	1141	7	0	3	0	0	logfile
✔	7D7E	30606	2023-02-21	2020-10-03	3.4	3.70	—	3.6	0.007	0.75	0.0	0.05	16.50	0.00	1.870	8.29	10.81	8.8	91.0	0.2	-3.24	0.65	0.84	2.83	3.6	0.003	0.61	0.0	0.04	16.14	0.00	2.168	5.23	0.42	6.0	94.0	0.0	0.16	1.21	0.75	0.89	2.51	15501	1878	8	0	13	0	0	logfile
✔	6iRA	9714	2023-02-24	2018-11-12	4.5	5.18	—	5.1	0.009	1.42	13.0	0.07	8.45	0.01	1.413	20.24	0.12	10.0	89.1	0.9	-3.53	0.60	0.69	—	5.1	0.004	0.81	0.0	0.05	12.47	0.00	2.118	21.30	0.08	8.8	90.9	0.3	-1.42	2.19	0.61	0.73	—	23932	3080	4	0	0	0	0	logfile
✔	7Q3G	13791	2023-02-23	2021-10-27	3.5	4.05	3.44	3.7	0.004	0.64	0.0	0.05	13.01	0.00	2.142	10.52	0.00	6.6	93.4	0.0	-0.94	0.71	0.71	3.02	3.7	0.004	0.64	0.0	0.04	14.82	0.00	2.174	10.58	0.10	6.1	93.9	0.0	-0.19	0.67	0.77	0.85	2.76	19570	2585	10	0	5	0	0	logfile
✔	7ZGo	14709	2023-02-18	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.84	0.00	2.170	9.40	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.6	0.002	0.50	0.0	0.04	16.48	0.00	2.254	8.96	0.52	3.1	96.9	0.0	2.18	1.09	0.53	0.79	3.51	7754	940	6	0	21	24	0	logfile
✔	6W5V	21549	2023-02-22	2020-03-13	4.0	4.11	—	4.0	0.008	1.35	4.0	0.18	17.76	0.01	1.979	62.54	9.99	7.0	92.3	0.7	-2.21	0.63	0.75	—	4.0	0.003	0.85	0.0	0.05	17.25	0.01	2.049	15.50	0.35	5.7	94.3	0.0	-0.42	0.87	0.63	0.77	—	10586	1307	9	0	24	0	0	logfile
✔	7ZRD	14911	2023-02-20	2022-05-04	3.3	3.45	3.22	3.4	0.004	0.81	0.0	0.05	15.86	0.01	2.272	5.42	0.00	4.1	95.9	0.0	-0.83	0.70	0.84	1.89	3.4	0.004	0.56	0.0	0.04	16.03	0.00	2.168	9.28	0.26	4.0	96.0	0.0	0.91	0.36	0.69	0.86	2.02	11037	1452	6	0	12	0	0	logfile
✔	6LRS	0960	2023-02-27	2020-01-16	3.37	2.99	—	3.4	0.006	1.04	0.0	0.06	10.05	0.01	2.260	10.82	0.38	6.7	93.3	0.0	-5.21	0.63	0.74	2.94	3.4	0.003	0.69	0.0	0.04	15.06	0.00	2.117	19.64	0.76	4.7	95.3	0.0	-1.74	0.72	0.66	0.78	2.42	30156	3832	12	0	0	0	0	logfile
✔	7XoY	33363	2023-02-20	2022-05-01	4.25	4.23	4.31	4.3	0.006	0.73	0.0	0.05	12.51	0.00	2.255	45.15	8.23	10.2	88.7	1.2	-2.66	0.80	0.81	—	4.3	0.003	0.72	0.0	0.04	11.97	0.01	2.081	12.49	0.00	8.4	91.6	0.1	-1.07	0.85	0.81	0.83	—	13264	1832	8	0	4	0	0	logfile
✔	7XER	33158	2023-02-23	2022-03-31	2.47	2.87	2.81	2.9	0.003	0.74	0.0	0.04	13.01	0.00	2.219	12.08	0.23	5.3	94.5	0.2	-0.04	0.73	0.82	2.14	2.9	0.004	0.61	0.0	0.04	16.27	0.00	2.174	8.26	1.47	3.9	95.9	0.2	0.87	1.51	0.72	0.85	2.11	20084	2456	8	0	4	0	0	logfile
✔	7FHo	31588	2023-02-23	2021-07-29	2.8	2.98	—	3.1	0.002	0.57	0.0	0.04	12.96	0.00	2.179	6.20	0.17	3.1	96.9	0.0	1.34	0.64	0.80	3.27	3.0	0.003	0.56	0.0	0.04	15.70	0.00	2.142	6.86	0.61	2.8	97.2	0.0	2.82	1.11	0.65	0.84	2.97	10648	1294	4	0	6	0	0	logfile
✔	6M79	30128	2023-02-27	2020-03-18	3.1	3.20	3.11	3.2	0.008	0.75	0.0	0.05	14.66	0.00	2.067	5.52	3.99	3.9	96.1	0.0	-0.35	0.74	0.80	2.93	3.2	0.005	0.65	0.0	0.04	15.56	0.00	2.134	5.39	0.44	3.3	96.7	0.0	0.58	0.51	0.75	0.85	3.03	15324	1842	8	0	8	0	0	logfile
✔	6QM9	4592	2023-02-19	2019-02-01	3.6	3.72	3.65	3.7	0.005	0.89	0.0	0.05	15.52	0.01	2.275	3.74	0.00	3.2	96.8	0.0	-6.09	0.74	0.84	2.64	3.7	0.003	0.66	0.0	0.04	16.73	0.00	2.167	8.54	0.52	3.5	96.5	0.0	0.54	0.56	0.75	0.84	1.82	10878	1346	4	0	4	0	0	logfile
✔	6F07	4163	2023-02-19	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.559	5.81	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.003	0.65	0.0	0.04	15.63	0.00	2.144	10.92	0.44	4.0	96.0	0.0	0.95	1.54	0.56	0.70	0.71	10149	1227	4	0	2	0	0	logfile

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