Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T4X	25691	2023-08-20	2021-12-10	2.8	3.07	2.83	3.1	0.006	0.93	0.0	0.05	12.97	0.01	2.392	0.82	1.52	1.4	98.6	0.0	-0.26	0.66	0.83	3.93	3.1	0.003	0.52	0.0	0.04	14.77	0.00	2.041	5.58	0.38	2.2	97.8	0.0	1.86	0.91	0.67	0.86	3.21	29234	1778	11	0	7	13	14614	logfile
✔	7YQ4	34019	2023-08-12	2022-08-05	3.95	4.36	4.08	4.3	0.016	1.30	0.0	0.07	17.82	0.02	2.256	4.50	0.53	9.0	91.0	0.0	-4.40	0.72	0.74	1.65	4.3	0.004	0.95	0.0	0.05	18.94	0.01	2.113	10.94	0.79	9.1	90.9	0.0	-2.93	1.12	0.74	0.80	1.46	10618	1243	5	24	0	0	0	logfile
✔	8ESR	24422	2023-08-12	2022-10-14	3.2	3.24	—	3.0	0.002	0.47	0.0	0.03	15.69	0.00	2.118	7.71	0.28	3.0	96.9	0.1	0.71	0.76	0.74	2.20	3.0	0.005	0.57	0.0	0.04	15.74	0.00	2.095	10.25	0.32	4.1	95.9	0.1	1.10	0.34	0.78	0.77	2.07	116762	9286	57	2372	1	0	0	logfile
✔	7UDU	26460	2023-08-14	2022-03-20	4.15	4.18	4.07	4.1	0.004	0.67	0.0	0.05	14.26	0.00	2.186	10.92	0.06	6.0	94.0	0.0	-0.29	0.55	0.65	—	4.1	0.003	0.73	0.0	0.04	14.65	0.00	1.892	13.07	0.18	5.3	94.7	0.0	-0.38	1.44	0.65	0.80	—	15711	1966	9	0	8	0	0	logfile
✔	7S4K	24829	2023-08-26	2021-09-09	2.36	2.82	—	2.6	0.009	1.05	3.0	0.05	18.91	0.00	1.448	13.70	3.29	5.4	94.4	0.2	0.71	0.74	0.82	4.62	2.6	0.005	0.60	0.0	0.05	17.51	0.00	1.941	8.57	2.51	4.4	95.4	0.2	0.88	1.11	0.78	0.91	4.67	22589	2577	27	0	63	110	0	logfile
✔	6QX9	4665	2023-08-23	2019-03-07	3.28	3.33	—	3.3	0.011	1.31	35.0	0.08	16.06	0.01	0.530	12.89	2.29	5.5	94.1	0.3	-3.26	0.46	0.51	1.65	3.3	0.003	0.67	0.0	0.04	16.72	0.00	1.902	14.77	0.23	4.6	95.3	0.0	-0.27	0.86	0.50	0.60	1.55	137494	15560	77	565	36	0	0	logfile
✔	5W7V	8781	2023-08-16	2017-06-20	3.8	3.42	—	3.5	0.007	0.77	0.0	0.06	12.79	0.00	2.365	15.84	0.00	1.4	98.6	0.0	-2.52	0.47	0.74	3.24	3.4	0.006	0.83	0.0	0.06	15.83	0.00	2.285	7.47	2.21	3.3	96.7	0.0	-0.77	1.27	0.54	0.79	3.99	20430	2640	270	0	0	0	0	logfile
✔	7T3A	25652	2023-08-17	2021-12-07	4.0	4.44	—	4.2	0.006	1.20	1.0	0.07	15.37	0.01	2.234	7.29	0.04	9.3	90.7	0.0	-3.22	0.81	0.81	—	4.2	0.003	0.71	0.0	0.04	16.76	0.00	2.134	16.10	0.23	7.8	92.2	0.0	-1.31	0.81	0.81	0.81	—	23310	2897	11	0	1	0	0	logfile
✔	7ZDT	14669	2023-08-11	2022-03-29	2.71	2.89	2.68	2.9	0.005	0.66	0.0	0.04	13.49	0.00	1.945	6.38	0.00	1.3	98.7	0.0	-0.81	0.76	0.90	3.85	2.9	0.004	0.55	0.0	0.04	15.76	0.00	1.944	5.22	1.28	1.7	98.3	0.0	2.14	0.34	0.74	0.91	3.63	9003	1155	3	0	2	0	0	logfile
✔	7TZ5	26202	2023-08-14	2022-02-15	3.41	3.66	—	3.6	0.009	1.18	9.0	0.07	13.20	0.00	2.067	15.18	0.30	10.6	89.0	0.4	-2.38	0.70	0.83	3.89	3.6	0.006	0.73	0.0	0.05	15.03	0.00	2.156	10.83	0.79	10.4	89.6	0.0	-1.61	0.46	0.67	0.82	3.70	16023	2142	9	0	0	0	0	logfile
✔	7S4J	24828	2023-08-26	2021-09-09	2.16	2.44	—	2.5	0.009	1.07	1.0	0.05	19.63	0.00	1.948	13.88	4.30	5.2	94.3	0.5	0.65	0.75	0.84	4.80	2.4	0.002	0.59	0.0	0.04	17.26	0.00	1.987	9.16	2.70	4.5	95.3	0.2	0.80	0.36	0.77	0.90	4.57	22780	2577	27	0	63	304	0	logfile
✔	7NVT	12612	2023-08-26	2021-03-16	2.9	3.03	2.87	2.9	0.003	0.47	0.0	0.04	15.56	0.00	1.979	4.90	0.00	2.8	97.2	0.0	1.40	0.75	0.75	3.26	2.9	0.004	0.65	0.0	0.04	18.28	0.00	2.028	11.46	1.72	3.2	96.8	0.0	0.63	2.20	0.78	0.82	2.79	44114	5249	30	100	11	0	0	logfile
✔	7EGB	31111	2023-08-11	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✔	7SBB	24976	2023-08-20	2021-09-24	3.1	2.42	—	2.1	0.013	2.09	97.0	0.14	17.08	0.02	2.030	4.28	3.53	4.6	95.2	0.1	-2.12	0.75	0.77	3.72	2.9	0.004	0.76	0.0	0.04	18.53	0.00	2.080	12.04	0.74	3.4	96.6	0.0	0.12	0.73	0.77	0.81	2.68	28938	3435	13	76	0	0	0	logfile
✔	8EUP	24410	2023-08-19	2022-10-19	3.1	3.34	—	3.2	0.004	0.56	0.0	0.04	17.14	0.00	2.108	12.23	0.40	5.3	94.6	0.1	-0.11	0.72	0.69	1.81	3.2	0.002	0.55	0.0	0.03	17.05	0.00	1.996	13.56	0.35	4.1	95.8	0.1	0.45	0.40	0.73	0.71	1.64	78722	6156	41	1623	1	0	0	logfile
✔	8DG7	27417	2023-08-14	2022-06-23	3.32	3.61	3.39	3.5	0.007	1.11	1.0	0.06	17.48	0.01	1.980	8.83	1.24	8.7	91.2	0.1	-2.75	0.70	0.70	0.47	3.5	0.003	0.66	0.0	0.04	17.26	0.00	1.930	14.66	0.12	6.7	93.1	0.2	-0.62	0.94	0.71	0.71	0.47	15609	1816	7	47	9	0	0	logfile
✔	8D48	27177	2023-08-09	2022-06-01	3.7	3.91	3.59	3.9	0.005	0.81	1.0	0.05	15.51	0.01	1.565	11.86	0.00	7.2	92.8	0.0	-1.11	0.72	0.79	2.07	3.9	0.003	0.69	0.0	0.05	15.92	0.00	2.223	8.73	0.16	5.9	94.1	0.0	-0.65	0.98	0.72	0.80	1.97	5545	714	4	0	2	0	0	logfile
✔	6ZFP	11185	2023-08-20	2020-06-17	3.24	3.95	3.34	3.7	0.006	0.70	0.0	0.05	14.34	0.00	2.198	9.71	0.12	8.4	91.5	0.1	-1.19	0.83	0.83	1.85	3.7	0.002	0.61	0.0	0.04	15.64	0.00	2.202	7.49	0.22	5.8	94.1	0.1	0.31	0.76	0.80	0.77	1.22	29385	3676	1	0	28	0	0	logfile
✔	7KC0	22803	2023-08-15	2020-10-04	3.2	3.58	—	3.3	0.005	0.66	0.0	0.05	15.92	0.00	2.210	11.20	2.90	6.0	94.0	0.0	-3.23	0.84	0.79	1.65	3.3	0.004	0.63	0.0	0.04	17.18	0.00	1.991	13.01	0.29	6.5	93.5	0.0	-1.18	0.53	0.85	0.82	1.75	19553	2334	10	47	4	0	0	logfile
✔	6WUA	21908	2023-08-13	2020-05-04	3.2	2.89	—	2.7	0.007	0.81	0.0	0.05	16.54	0.01	1.992	9.24	14.80	15.4	84.5	0.1	-4.41	0.72	0.80	2.77	2.7	0.005	0.71	0.0	0.04	16.19	0.01	1.987	8.64	0.29	12.8	87.2	0.0	-1.73	1.65	0.75	0.84	2.24	15195	833	9	402	1	0	0	logfile

• Page 1 of 542
• next →