Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSE	22451	2023-08-13	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.9	0.007	1.10	0.0	0.09	14.86	0.00	2.156	11.87	0.00	20.1	79.9	0.0	-3.21	2.77	0.87	0.64	—	13288	3168	24	32	0	0	0	logfile
✔	8FEL	29032	2023-08-11	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.55	0.0	0.04	12.77	0.00	2.288	10.75	0.00	3.8	96.2	0.0	0.13	1.69	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	7T8C	25744	2023-08-20	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	11.08	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	6NF8	9362	2023-08-13	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.08	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.64	0.0	0.04	15.73	0.00	2.030	12.29	0.35	5.3	94.7	0.0	-0.24	2.59	0.84	0.79	1.22	65776	5509	32	952	147	0	0	logfile
✔	7SAM	24952	2023-08-09	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	8FEJ	29029	2023-08-11	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.253	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.5	0.002	0.56	0.0	0.04	12.24	0.00	2.204	9.64	0.00	6.1	93.7	0.2	-0.44	1.31	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	6XLH	22244	2023-08-13	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.004	0.62	0.0	0.04	16.39	0.00	1.913	9.37	1.67	3.1	96.9	0.0	-0.57	0.88	0.77	0.88	3.86	13608	1675	6	0	6	0	0	logfile
✔	7SQV	25396	2023-08-09	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	6NEQ	9358	2023-08-13	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.33	0.00	2.089	13.57	0.39	5.4	94.5	0.1	-0.36	2.01	0.85	0.85	1.39	65776	5509	32	952	147	0	0	logfile
✔	5N6W	3595	2023-08-25	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.003	0.69	0.0	0.04	11.38	0.01	1.946	14.52	0.13	11.9	87.4	0.7	-3.87	1.92	0.71	0.71	—	40752	2512	16	0	0	0	20032	logfile
✔	6HD5	0201	2023-08-11	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	8H8B	34541	2023-08-10	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	7JLX	22383	2023-08-09	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6X34	22017	2023-08-24	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.80	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.002	0.62	0.0	0.04	9.56	0.00	2.078	9.67	0.00	3.4	96.6	0.0	0.83	0.84	0.80	0.79	—	97888	13956	12	0	1320	0	0	logfile
✔	6X32	22015	2023-08-12	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.9	0.004	0.67	0.0	0.04	13.24	0.00	2.114	9.22	0.43	3.1	96.9	0.0	0.55	1.68	0.60	0.74	1.86	114280	14744	16	0	1416	0	0	logfile
✔	7TBH	25799	2023-08-27	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.17	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.004	0.67	0.0	0.04	13.73	0.00	2.121	8.34	0.61	1.9	97.7	0.4	2.87	0.96	0.81	0.87	2.93	51768	6288	48	0	0	0	0	logfile
✔	6XLG	22243	2023-08-12	2020-06-28	2.71	2.81	—	2.8	0.001	0.36	0.0	0.04	10.12	0.00	2.105	5.84	0.00	1.3	98.7	0.0	-3.01	0.73	0.81	4.05	2.8	0.003	0.58	0.0	0.04	16.70	0.00	1.943	10.00	2.08	2.2	97.8	0.0	-0.25	3.18	0.78	0.89	4.23	12258	1504	6	0	6	0	0	logfile
✔	8C91	16498	2023-08-11	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	12.73	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.006	0.73	0.0	0.04	16.77	0.01	1.945	34.49	0.00	10.9	89.0	0.1	-2.26	0.98	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	8C96	16503	2023-08-26	2023-01-21	4.43	5.03	4.86	4.4	0.001	0.36	0.0	0.03	13.38	0.00	1.928	6.57	0.08	3.8	96.1	0.1	0.57	0.83	0.79	—	4.4	0.004	0.62	0.0	0.03	16.25	0.00	2.022	29.49	0.00	7.1	92.9	0.0	-1.60	0.88	0.84	0.85	—	44214	1607	16	1475	0	0	0	logfile
✔	8C93	16500	2023-08-27	2023-01-21	4.17	4.72	4.51	4.3	0.001	0.36	0.0	0.03	13.25	0.00	1.053	6.07	0.07	4.9	95.1	0.0	0.52	0.84	0.79	—	4.1	0.005	0.65	0.0	0.03	15.97	0.00	1.948	27.75	0.00	8.3	91.6	0.1	-1.47	0.75	0.86	0.85	—	50320	1657	17	1740	0	0	0	logfile

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