Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5MM2	3528	2021-09-02	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.49	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✘	6MiX	9132	2021-09-06	2018-09-20	3.6	4.57	—	14.0	0.007	1.19	0.0	0.07	16.40	0.01	2.212	9.71	2.30	14.6	85.0	0.4	-5.69	-0.03	0.00	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43120	5348	4	0	0	0	0	logfile
✘	5A7U	3079	2021-09-02	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	28.57	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✘	5X1G	6701	2021-09-02	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✘	5AJ0	2875	2021-09-11	2015-02-19	3.5	11.12	—	—	0.011	1.61	31.0	0.09	16.14	0.01	0.414	42.35	8.00	5.7	89.8	4.5	0.77	0.00	0.00	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	218559	11738	106	5776	355	0	0	logfile
✘	7oJH	12951	2021-09-02	2021-05-15	3.1	2.57	4.81	20.0	0.016	1.03	0.0	0.29	10.92	0.00	2.239	2.98	0.52	2.9	97.1	0.0	0.37	0.00	0.00	-0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8999	1138	4	0	5	0	0	logfile
✘	3JB8	6382	2021-09-18	2015-08-04	3.6	3.59	—	96.0	0.011	1.54	0.0	0.07	11.99	0.01	0.235	173.86	4.85	9.9	87.9	2.2	-2.92	0.00	0.00	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	245880	33000	180	0	0	0	0	logfile
✔	5MSH	3565	2021-09-02	2017-01-04	4.25	3.96	—	20.0	0.014	1.57	0.0	0.07	9.56	0.01	2.323	2.36	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.010	1.26	0.0	0.05	13.26	0.01	2.119	16.20	0.00	7.3	92.5	0.2	-0.97	1.98	0.04	0.16	—	4287	551	2	0	0	0	0	logfile
✔	5M6S	3451	2021-09-02	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.5	0.003	0.64	0.0	0.03	18.57	0.00	1.968	10.68	0.00	4.2	95.8	0.0	1.93	2.66	0.04	0.07	—	1593	98	1	0	0	0	793	logfile
✔	6EK0	3883	2021-09-12	2017-09-24	2.9	3.27	—	40.0	0.012	1.13	0.0	0.06	16.18	0.03	0.883	4.05	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.004	0.83	2.0	0.03	17.28	0.01	1.254	15.49	2.44	8.1	91.9	0.0	-2.27	1.74	0.11	0.15	0.16	219596	11719	128	5861	415	61	0	logfile
✘	7A5K	11646	2021-09-03	2020-08-21	3.7	3.12	3.69	40.0	0.014	1.28	3.0	0.06	17.54	0.01	1.211	7.11	0.05	10.7	88.9	0.3	-4.20	0.03	0.00	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	171126	14163	108	2644	165	0	0	logfile
✔	6KKR	0701	2021-09-02	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.69	0.0	0.04	12.81	0.00	2.153	10.40	2.27	3.4	96.6	0.0	0.87	1.66	0.12	0.11	-0.13	8416	1074	4	0	24	0	0	logfile
✔	5NV3	3699	2021-09-06	2017-05-03	3.39	3.43	—	3.4	0.007	1.21	2.0	0.07	14.58	0.00	2.164	3.27	0.94	5.6	94.2	0.2	-2.82	0.09	0.16	3.78	3.4	0.008	0.91	0.0	0.04	16.56	0.00	2.070	8.47	0.23	2.8	97.2	0.0	-0.11	1.64	0.68	0.77	4.10	37816	4768	24	0	16	0	0	logfile
✔	6KKT	0702	2021-09-02	2019-07-27	2.9	2.94	—	7.1	0.010	1.16	0.0	0.06	10.98	0.01	2.343	4.23	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	20.0	0.012	1.28	0.0	0.04	12.32	0.00	1.528	11.69	1.25	2.9	97.1	0.0	0.60	0.59	0.14	0.05	0.53	8416	1074	4	0	24	0	0	logfile
✔	5YWP	6855	2021-09-04	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	47.18	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	20.0	0.003	0.73	0.0	0.04	11.13	0.00	2.154	12.56	0.00	4.0	95.5	0.4	-0.76	1.33	0.13	0.04	—	19561	2588	10	0	0	0	0	logfile
✔	6KFK	9974	2021-09-03	2019-07-08	4.1	4.28	—	15.0	0.015	2.00	0.0	0.08	10.94	0.01	1.444	19.39	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.88	0.0	0.05	12.92	0.00	2.087	19.28	0.01	9.0	90.1	0.9	-1.32	2.37	0.24	0.30	—	65076	8844	22	0	0	0	0	logfile
✔	5M5H	4155	2021-09-02	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	38.97	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.003	0.94	0.0	0.06	12.83	0.01	2.355	15.13	0.00	10.3	89.7	0.0	-0.57	2.85	0.14	0.13	—	1086	132	1	0	0	0	0	logfile
✔	6Q97	4476	2021-09-12	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.006	0.96	2.0	0.05	20.64	0.01	1.041	22.12	0.12	9.7	90.3	0.0	-3.62	2.64	0.31	0.25	0.31	156609	6124	72	5051	441	2	0	logfile
✔	6FLQ	4275	2021-09-05	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.008	0.94	1.0	0.04	16.93	0.01	2.051	14.94	0.62	8.5	91.4	0.1	-1.49	2.13	0.25	0.20	-0.02	30201	3868	10	91	3	0	0	logfile
✔	6RED	4850	2021-09-05	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.05	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	28.0	0.014	1.28	5.0	0.05	16.27	0.01	1.769	23.00	2.08	5.3	94.6	0.1	-1.34	1.60	0.25	0.19	0.37	33899	4503	25	0	10	0	0	logfile

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