Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QK5	14038	2023-02-19	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.63	0.0	0.05	18.16	0.01	2.237	3.82	1.88	3.9	96.1	0.0	-1.69	1.47	0.36	0.82	7.53	10485	666	18	0	36	0	5337	logfile
✔	7N8o	24239	2023-02-22	2021-06-15	1.93	1.73	—	1.9	0.024	2.36	0.0	0.10	20.29	0.01	1.522	14.75	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.005	0.83	0.0	0.05	18.83	0.01	2.005	12.99	1.51	3.0	97.0	0.0	0.85	0.34	0.75	0.77	5.43	54656	5544	113	0	228	1236	0	logfile
✘	7A5V	11657	2023-02-23	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✔	7QKW	14055	2023-02-17	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.50	0.0	0.05	16.64	0.00	2.420	1.91	2.54	4.4	95.6	0.0	-2.76	1.36	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	7VD9	31911	2023-02-22	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7UUR	26801	2023-02-21	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	4.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	2.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	7RCV	24407	2023-02-22	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.10	20.33	0.01	1.915	13.92	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.004	0.81	0.0	0.05	18.81	0.01	2.061	12.36	1.93	2.6	97.4	0.0	0.83	0.91	0.81	0.84	5.21	54656	5544	114	0	228	1236	0	logfile
✔	7M4U	23666	2023-02-21	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.76	0.0	0.04	16.09	0.01	1.732	5.99	2.36	3.6	96.2	0.2	0.59	1.72	0.82	0.81	3.40	51764	2386	27	1528	84	191	0	logfile
✔	7PQU	13605	2023-02-19	2021-09-20	3.03	1.80	—	3.4	0.008	0.88	0.0	0.05	16.74	0.01	0.051	14.73	5.14	7.9	92.0	0.1	-3.95	0.77	0.80	2.84	3.5	0.003	0.62	0.0	0.04	16.43	0.01	2.258	9.01	0.18	6.0	94.0	0.0	-0.28	0.99	0.75	0.79	2.45	10798	1312	12	0	8	14	0	logfile
✔	6ZGL	11210	2023-02-21	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	7P6A	13223	2023-02-17	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.15	0.00	2.293	4.99	0.00	4.7	95.3	0.0	-2.61	0.38	0.55	0.89	7.74	4166	540	10	0	0	76	0	logfile
✘	6RiC	11824	2023-02-27	2019-04-23	2.8	1.94	—	49.0	0.006	0.75	0.0	0.05	14.01	0.01	2.068	5.10	0.03	3.5	96.5	0.0	-4.16	0.05	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29677	3663	12	0	5	0	0	logfile
✔	7MiJ	23853	2023-02-24	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.51	0.0	0.04	18.05	0.00	2.213	4.43	0.92	2.6	97.4	0.0	1.38	1.08	0.75	0.80	4.57	23010	2556	12	0	38	328	0	logfile
✔	8CS9	26960	2023-02-23	2022-05-12	2.74	1.95	—	1.6	0.006	0.84	0.0	0.05	18.24	0.01	2.218	10.19	3.66	2.2	97.5	0.3	0.33	0.82	0.81	3.50	1.6	0.003	0.66	0.0	0.04	17.96	0.00	2.134	8.25	2.63	1.9	98.1	0.0	1.54	0.38	0.83	0.83	3.46	60944	7677	39	0	27	268	0	logfile
✘	7P13	13154	2023-02-21	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✔	7SiL	25143	2023-02-20	2021-10-14	2.7	1.97	—	1.5	0.004	0.68	0.0	0.05	13.57	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.004	0.60	0.0	0.04	15.99	0.00	2.177	8.17	1.70	3.0	97.0	0.0	0.52	0.39	0.77	0.78	2.92	12924	1564	8	0	34	0	0	logfile
✔	7PBW	13307	2023-02-19	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7P6B	13224	2023-02-17	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✔	7Z0o	14428	2023-02-20	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.60	0.0	0.04	21.27	0.00	2.148	9.25	3.29	2.0	98.0	0.0	1.65	0.48	0.77	0.79	3.26	11864	1256	10	78	0	0	0	logfile
✔	7YPG	33999	2023-02-16	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.003	0.62	0.0	0.05	18.36	0.00	2.260	10.68	3.21	5.6	94.4	0.0	-5.21	0.66	0.41	0.82	3.09	2676	354	6	0	0	0	0	logfile

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