Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J5A	35984	2023-11-21	2023-04-21	1.19	1.12	1.22	1.2	0.014	1.48	0.0	0.08	13.93	0.01	1.560	8.49	3.21	0.6	99.4	0.0	3.37	0.51	0.66	8.67	1.2	0.003	0.57	0.0	0.03	14.11	0.00	1.975	14.59	2.56	1.8	98.2	0.0	5.37	0.22	0.69	0.82	8.60	56208	4128	24	0	24	3384	17040	logfile
✔	7A6A	11668	2023-11-20	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.59	0.0	0.04	15.31	0.00	2.163	2.66	1.82	1.8	98.2	0.0	4.55	0.44	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	8CPU	16786	2023-11-21	2023-03-03	1.76	1.54	1.80	1.6	0.004	0.71	0.0	0.05	14.91	0.01	1.976	4.95	0.00	1.0	99.0	0.0	2.29	0.71	0.77	8.55	1.6	0.004	0.62	0.0	0.04	15.65	0.00	2.051	5.31	0.57	1.8	98.2	0.0	3.90	0.29	0.73	0.80	8.29	35823	4152	72	0	38	1705	0	logfile
✔	8CAM	16530	2023-11-20	2023-01-24	1.86	1.57	1.83	1.7	0.010	1.53	0.0	0.11	14.33	0.03	1.821	0.54	0.27	3.0	96.8	0.1	-1.28	0.64	0.76	6.57	1.6	0.008	1.15	0.0	0.06	14.87	0.01	1.713	7.67	1.60	2.8	97.2	0.0	-0.29	0.33	0.73	0.82	6.46	86648	2767	65	2724	322	6113	0	logfile
✔	8CPM	16783	2023-11-22	2023-03-03	1.81	1.57	1.84	1.6	0.005	0.85	0.0	0.05	15.21	0.01	1.916	7.77	0.00	1.0	99.0	0.0	2.32	0.70	0.75	7.56	1.6	0.003	0.60	0.0	0.04	16.38	0.00	2.043	7.22	0.11	2.3	97.7	0.0	4.30	0.37	0.71	0.77	7.46	36090	4152	72	0	38	1972	0	logfile
✔	8CGU	16651	2023-11-21	2023-02-06	1.89	1.60	1.82	1.8	0.009	1.59	1.0	0.11	13.35	0.02	1.895	0.38	0.38	2.4	97.6	0.0	-0.61	0.60	0.81	6.95	1.8	0.003	0.65	0.0	0.04	13.59	0.01	1.845	5.16	0.58	1.8	98.2	0.0	1.19	2.29	0.70	0.87	6.09	35196	1266	31	1078	87	1871	0	logfile
✔	8CA7	16520	2023-11-17	2023-01-24	2.06	1.61	1.93	1.9	0.012	1.53	0.0	0.14	14.84	0.03	1.726	0.60	0.71	3.0	96.8	0.1	-1.46	0.62	0.75	4.98	1.9	0.004	0.78	0.0	0.05	15.37	0.01	1.755	8.56	1.56	2.2	97.7	0.1	1.22	0.46	0.68	0.78	4.87	18093	848	19	502	42	543	0	logfile
✔	8CPX	16789	2023-11-21	2023-03-03	1.76	1.61	1.78	1.6	0.005	0.80	0.0	0.06	14.97	0.01	2.063	5.37	0.00	1.0	99.0	0.0	2.18	0.75	0.81	8.02	1.7	0.002	0.52	0.0	0.04	15.88	0.00	2.212	2.81	1.31	1.8	98.2	0.0	4.58	0.39	0.78	0.85	7.90	35827	4152	72	0	38	1709	0	logfile
✔	6Z9F	11122	2023-11-19	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.003	0.63	0.0	0.04	14.99	0.00	2.122	4.64	3.05	1.8	98.2	0.0	4.60	0.98	0.85	0.86	8.43	41020	4152	72	0	32	4172	0	logfile
✔	8CPW	16788	2023-11-21	2023-03-03	1.79	1.64	1.78	1.7	0.005	0.84	0.0	0.06	14.35	0.01	2.180	3.39	0.63	1.0	99.0	0.0	2.13	0.77	0.83	8.34	1.6	0.004	0.71	0.0	0.04	14.75	0.00	2.215	4.05	0.41	1.2	98.8	0.0	3.93	0.22	0.77	0.85	7.73	36004	4152	72	0	38	1886	0	logfile
✔	7QQ3	14121	2023-11-20	2022-01-06	2.1	1.65	2.18	1.9	0.008	0.76	5.0	0.05	14.94	0.02	1.832	2.70	4.22	3.6	96.0	0.4	-0.31	0.50	0.61	3.73	1.9	0.004	0.88	4.0	0.04	15.29	0.01	1.784	7.34	1.88	3.8	96.0	0.2	-0.53	1.23	0.64	0.70	4.00	87594	2903	35	3016	154	28	0	logfile
✔	7QK5	14038	2023-11-15	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.63	0.0	0.05	18.16	0.01	2.237	3.82	1.88	3.9	96.1	0.0	-1.69	1.47	0.36	0.82	7.53	10485	666	18	0	36	0	5337	logfile
✔	8CPS	16784	2023-11-21	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.58	0.0	0.04	17.00	0.00	2.154	4.46	0.16	1.2	98.8	0.0	4.78	0.30	0.77	0.83	8.39	36034	4152	72	0	38	1916	0	logfile
✔	8F0K	28759	2023-11-15	2022-11-03	1.9	1.70	1.92	1.9	0.010	0.59	0.0	0.04	14.21	0.01	2.252	4.34	0.91	1.2	98.8	0.0	-1.70	0.50	0.67	4.75	1.9	0.004	0.68	0.0	0.04	16.58	0.00	2.187	6.72	1.09	2.1	97.9	0.0	1.33	0.64	0.58	0.73	4.97	10553	1272	12	0	18	39	0	logfile
✔	7T2G	25612	2023-11-14	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.30	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.003	0.56	0.0	0.04	15.24	0.00	2.152	11.11	1.43	2.1	97.9	0.0	0.87	0.38	0.80	0.80	4.35	6922	898	4	0	3	8	0	logfile
✔	7M4Y	23670	2023-11-20	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	16.31	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.004	0.71	0.0	0.04	16.46	0.01	1.725	4.89	3.30	2.6	97.2	0.1	0.47	0.29	0.79	0.76	3.79	139817	5511	80	4453	200	1044	0	logfile
✔	8CPT	16785	2023-11-21	2023-03-03	1.79	1.72	1.81	1.8	0.004	0.72	0.0	0.05	15.65	0.01	2.157	1.26	0.49	1.0	99.0	0.0	2.30	0.80	0.85	8.36	1.8	0.003	0.58	0.0	0.04	16.07	0.00	2.206	1.20	0.65	1.8	98.2	0.0	4.32	0.33	0.81	0.87	8.14	36024	4152	72	0	38	1906	0	logfile
✔	7VZ4	32220	2023-11-15	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.005	0.70	0.0	0.04	28.42	0.01	2.320	4.08	0.49	0.5	99.5	0.0	2.76	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✔	8P6Y	17511	2023-11-13	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	16.82	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.004	0.63	0.0	0.04	16.85	0.00	2.148	4.60	0.90	1.3	98.5	0.2	1.74	0.21	0.68	0.85	6.33	5266	630	7	0	3	158	0	logfile
✔	7N8o	24239	2023-11-14	2021-06-15	1.93	1.73	—	1.9	0.025	2.40	0.0	0.11	20.28	0.01	1.522	14.77	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.81	0.0	0.05	18.74	0.01	2.000	12.74	1.66	3.0	97.0	0.0	0.83	0.34	0.77	0.80	5.41	54656	5544	113	0	228	1236	0	logfile

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